Wall clock time and date at job start Tue Mar 31 2020 15:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86795 * 120.00309 * 2 1 4 4 H 1.48508 * 109.46913 * 269.99733 * 3 2 1 5 5 H 1.48502 * 109.46910 * 29.99437 * 3 2 1 6 6 H 1.48496 * 109.47349 * 149.99898 * 3 2 1 7 7 C 1.38661 * 119.99467 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99547 * 180.02562 * 7 2 1 9 9 O 1.34826 * 120.00541 * 359.97438 * 7 2 1 10 10 C 1.35743 * 117.00301 * 174.93479 * 9 7 2 11 11 C 1.38935 * 120.04459 * 185.61725 * 10 9 7 12 12 C 1.38114 * 120.04765 * 179.97438 * 11 10 9 13 13 C 1.38226 * 120.12216 * 359.77650 * 12 11 10 14 14 C 1.38800 * 120.07876 * 0.49894 * 13 12 11 15 15 O 1.35910 * 120.01911 * 179.74613 * 14 13 12 16 16 C 1.34729 * 116.99683 * 255.02107 * 15 14 13 17 17 O 1.21477 * 120.00069 * 355.01048 * 16 15 14 18 18 C 1.47732 * 119.99815 * 175.01815 * 16 15 14 19 19 C 1.39769 * 120.07403 * 359.97438 * 18 16 15 20 20 C 1.38054 * 120.14815 * 180.25855 * 19 18 16 21 21 C 1.38092 * 120.30529 * 359.44233 * 20 19 18 22 22 C 1.39728 * 120.15334 * 0.55981 * 21 20 19 23 23 C 1.47738 * 120.07777 * 179.74732 * 22 21 20 24 24 O 1.21472 * 120.00220 * 179.97438 * 23 22 21 25 25 O 1.34715 * 119.99904 * 359.97138 * 23 22 21 26 26 C 1.39334 * 120.07782 * 179.97438 * 18 16 15 27 27 C 1.38617 * 119.95699 * 359.48122 * 14 13 12 28 28 H 0.96998 * 119.99718 * 0.02562 * 1 2 3 29 29 H 1.08005 * 119.97577 * 359.97438 * 11 10 9 30 30 H 1.08002 * 119.93712 * 180.02562 * 12 11 10 31 31 H 1.08001 * 119.96534 * 180.27805 * 13 12 11 32 32 H 1.07994 * 119.92824 * 359.97438 * 19 18 16 33 33 H 1.08003 * 119.84860 * 179.72528 * 20 19 18 34 34 H 1.08004 * 119.92795 * 180.25813 * 21 20 19 35 35 H 0.96706 * 116.99476 * 180.02562 * 25 23 22 36 36 H 1.08003 * 120.15137 * 359.97438 * 26 18 16 37 37 H 1.08002 * 120.06303 * 180.25311 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4973 2.0463 -1.4002 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 3.0889 -1.2009 0.0010 9 8 1.3347 -2.3685 0.0016 10 6 2.0698 -3.5047 -0.1047 11 6 1.4355 -4.7347 -0.2277 12 6 2.1834 -5.8907 -0.3364 13 6 3.5642 -5.8270 -0.3278 14 6 4.2032 -4.6015 -0.1995 15 8 5.5609 -4.5408 -0.1861 16 6 6.1516 -4.3227 1.0050 17 8 5.4731 -4.1002 1.9878 18 6 7.6244 -4.3539 1.1158 19 6 8.4065 -4.6101 -0.0139 20 6 9.7828 -4.6449 0.0890 21 6 10.3967 -4.4159 1.3045 22 6 9.6272 -4.1586 2.4421 23 6 10.2856 -3.9193 3.7428 24 8 9.6153 -3.6953 4.7308 25 8 11.6293 -3.9495 3.8332 26 6 8.2371 -4.1280 2.3467 27 6 3.4559 -3.4392 -0.0906 28 1 -0.4849 0.8400 -0.0004 29 1 0.3568 -4.7869 -0.2382 30 1 1.6885 -6.8458 -0.4322 31 1 4.1465 -6.7321 -0.4175 32 1 7.9330 -4.7858 -0.9684 33 1 10.3823 -4.8477 -0.7862 34 1 11.4740 -4.4404 1.3772 35 1 12.0144 -3.7874 4.7054 36 1 7.6375 -3.9292 3.2227 37 1 3.9514 -2.4843 0.0052 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605601278.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:18 Heat of formation + Delta-G solvation = -156.698061 kcal Electronic energy + Delta-G solvation = -25975.151768 eV Core-core repulsion = 21841.137597 eV Total energy + Delta-G solvation = -4134.014171 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.087 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.49736 -41.50665 -40.66397 -39.70139 -38.53853 -37.41037 -37.17565 -34.37472 -33.11987 -32.38556 -31.33350 -30.64962 -27.54366 -26.35547 -25.85405 -23.82968 -23.32401 -22.55562 -21.91705 -20.15042 -19.81346 -19.38882 -18.89744 -18.01620 -17.55296 -17.24504 -17.13332 -16.90140 -16.77554 -16.13763 -16.05628 -15.88430 -15.65088 -15.41377 -14.96439 -14.71931 -14.54913 -14.40281 -13.89891 -13.70949 -13.23522 -13.09912 -13.07149 -12.78791 -12.69310 -12.66909 -12.51259 -12.21912 -11.98483 -11.95492 -11.82441 -11.51917 -10.88539 -10.39340 -10.29463 -9.85527 -9.19235 -8.56057 -6.25367 -0.67939 -0.34729 0.07277 0.51849 1.09069 1.28196 1.36484 1.45533 1.47586 1.53859 1.97024 2.10761 2.58008 2.69457 3.02099 3.28919 3.41568 3.65288 3.83236 3.86438 3.95685 3.96039 4.13216 4.20450 4.28724 4.48921 4.55335 4.71031 4.73413 4.90012 4.98474 5.01556 5.07577 5.16704 5.28552 5.37240 5.45550 5.48597 5.50917 5.57438 5.91129 5.94609 6.57881 6.87221 6.87717 7.62803 8.66351 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.011904 B = 0.003104 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.614063 B = 9017.907527 C =10449.601740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.015 4.015 3 Si 1.014 2.986 4 H -0.255 1.255 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.419 4.419 8 H 0.090 0.910 9 O -0.220 6.220 10 C 0.126 3.874 11 C -0.191 4.191 12 C -0.047 4.047 13 C -0.187 4.187 14 C 0.111 3.889 15 O -0.280 6.280 16 C 0.499 3.501 17 O -0.524 6.524 18 C -0.147 4.147 19 C -0.018 4.018 20 C -0.124 4.124 21 C -0.006 4.006 22 C -0.151 4.151 23 C 0.536 3.464 24 O -0.553 6.553 25 O -0.494 6.494 26 C -0.009 4.009 27 C -0.247 4.247 28 H 0.276 0.724 29 H 0.132 0.868 30 H 0.178 0.822 31 H 0.161 0.839 32 H 0.164 0.836 33 H 0.190 0.810 34 H 0.183 0.817 35 H 0.437 0.563 36 H 0.122 0.878 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.543 -12.320 -1.611 29.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.214 4.214 3 Si 0.833 3.167 4 H -0.179 1.179 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.495 4.495 8 H 0.107 0.893 9 O -0.126 6.126 10 C 0.075 3.925 11 C -0.211 4.211 12 C -0.065 4.065 13 C -0.205 4.205 14 C 0.070 3.930 15 O -0.195 6.195 16 C 0.346 3.654 17 O -0.412 6.412 18 C -0.148 4.148 19 C -0.036 4.036 20 C -0.141 4.141 21 C -0.024 4.024 22 C -0.152 4.152 23 C 0.381 3.619 24 O -0.445 6.445 25 O -0.308 6.308 26 C -0.028 4.028 27 C -0.267 4.267 28 H 0.085 0.915 29 H 0.150 0.850 30 H 0.196 0.804 31 H 0.178 0.822 32 H 0.182 0.818 33 H 0.207 0.793 34 H 0.200 0.800 35 H 0.299 0.701 36 H 0.140 0.860 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 25.574 -12.063 -1.405 28.311 hybrid contribution -0.329 1.368 1.142 1.812 sum 25.245 -10.696 -0.263 27.419 Atomic orbital electron populations 1.70155 1.07759 1.29086 1.47936 1.26528 0.96909 1.02456 0.95469 0.84665 0.77571 0.74781 0.79671 1.17949 1.18812 1.18765 1.21685 0.92076 0.81630 1.54118 0.89264 1.83949 1.35308 1.12367 1.80980 1.19721 0.90151 0.88788 0.93861 1.20743 1.01046 0.89959 1.09303 1.21102 0.92380 0.98040 0.94989 1.21128 0.95304 0.95674 1.08407 1.18388 0.79583 0.93538 1.01538 1.84518 1.19466 1.82296 1.33184 1.22110 0.90204 0.72589 0.80510 1.90909 1.66517 1.45043 1.38769 1.18815 0.87113 1.12395 0.96467 1.22136 0.95008 0.88971 0.97480 1.21705 0.93238 0.99703 0.99462 1.22200 1.02401 0.87802 0.89960 1.18933 0.91978 1.11320 0.93004 1.20746 0.81154 0.71847 0.88132 1.90941 1.66576 1.47149 1.39855 1.84460 1.19924 1.83277 1.43104 1.21202 0.94177 0.90819 0.96616 1.21191 0.94222 0.98698 1.12616 0.91462 0.85005 0.80448 0.82174 0.81794 0.79258 0.80005 0.70059 0.85995 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.79 13.67 21.62 0.30 -56.49 16 2 C -0.01 -0.88 5.49 84.83 0.47 -0.41 16 3 Si 1.01 44.75 29.55 68.60 2.03 46.78 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 5 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.42 -25.74 9.49 67.92 0.64 -25.09 16 8 H 0.09 5.25 5.20 -2.91 -0.02 5.24 16 9 O -0.22 -13.69 9.76 -22.61 -0.22 -13.91 16 10 C 0.13 6.58 6.65 22.56 0.15 6.73 16 11 C -0.19 -8.08 9.99 22.41 0.22 -7.85 16 12 C -0.05 -1.53 10.03 22.24 0.22 -1.31 16 13 C -0.19 -6.15 9.99 22.40 0.22 -5.92 16 14 C 0.11 4.44 5.19 22.49 0.12 4.56 16 15 O -0.28 -9.68 9.27 0.05 0.00 -9.68 16 16 C 0.50 17.47 7.76 70.33 0.55 18.02 16 17 O -0.52 -23.21 15.81 19.91 0.31 -22.89 16 18 C -0.15 -3.69 5.87 -20.13 -0.12 -3.81 16 19 C -0.02 -0.28 9.61 22.60 0.22 -0.06 16 20 C -0.12 -1.00 10.02 22.19 0.22 -0.77 16 21 C -0.01 -0.06 9.61 22.60 0.22 0.16 16 22 C -0.15 -2.77 5.87 -20.13 -0.12 -2.89 16 23 C 0.54 10.16 8.27 70.33 0.58 10.75 16 24 O -0.55 -15.53 17.13 19.93 0.34 -15.19 16 25 O -0.49 -4.64 12.67 -56.25 -0.71 -5.35 16 26 C -0.01 -0.24 9.14 22.81 0.21 -0.03 16 27 C -0.25 -12.13 8.59 22.49 0.19 -11.94 16 28 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 29 H 0.13 5.25 8.06 -2.91 -0.02 5.23 16 30 H 0.18 3.87 8.06 -2.91 -0.02 3.85 16 31 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 32 H 0.16 2.03 7.60 -2.91 -0.02 2.01 16 33 H 0.19 -0.06 8.06 -2.91 -0.02 -0.09 16 34 H 0.18 0.51 7.60 -2.91 -0.02 0.49 16 35 H 0.44 0.53 9.11 -74.05 -0.67 -0.14 16 36 H 0.12 3.84 7.23 -2.91 -0.02 3.82 16 37 H 0.11 5.70 5.64 -2.91 -0.02 5.68 16 Total: -1.00 -88.89 343.65 6.53 -82.36 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.48 Total: 14.25 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 4.00 Total: -19.87 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.30 Total: -56.49 kcal Atomic # 8 Polarization: -66.75 SS G_CDS: -0.28 Total: -67.02 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -88.89 6.53 -82.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605601278.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.337 kcal (2) G-P(sol) polarization free energy of solvation -88.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds