Wall clock time and date at job start Tue Mar 31 2020 15:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38217 * 119.98712 * 2 1 4 4 C 1.38434 * 119.97400 * 180.02562 * 3 2 1 5 5 F 1.35099 * 120.02897 * 180.02562 * 4 3 2 6 6 C 1.38485 * 119.94974 * 359.97438 * 4 3 2 7 7 C 1.38176 * 119.97529 * 0.02562 * 6 4 3 8 8 C 1.38227 * 119.98387 * 179.97438 * 2 1 3 9 9 C 1.50697 * 119.97984 * 0.02562 * 8 2 1 10 10 H 1.09006 * 109.46780 * 325.00252 * 9 8 2 11 11 O 1.45198 * 109.47615 * 204.99830 * 9 8 2 12 12 C 1.34229 * 117.00305 * 149.99645 * 11 9 8 13 13 O 1.20832 * 119.99492 * 0.02562 * 12 11 9 14 14 C 1.50696 * 120.00146 * 180.02562 * 12 11 9 15 15 S 1.80991 * 109.47072 * 180.02562 * 14 12 11 16 16 C 1.76198 * 100.00169 * 179.97438 * 15 14 12 17 17 H 1.08005 * 119.99788 * 0.02562 * 16 15 14 18 18 C 1.38794 * 120.00474 * 179.97438 * 16 15 14 19 19 N 1.31634 * 119.99995 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00350 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47510 * 89.99908 * 20 18 16 22 22 H 1.48508 * 109.47232 * 210.00230 * 20 18 16 23 23 H 1.48500 * 109.46887 * 329.99710 * 20 18 16 24 24 C 1.50702 * 109.46995 * 84.99541 * 9 8 2 25 25 O 1.20832 * 119.99638 * 115.00083 * 24 9 8 26 26 O 1.34228 * 120.00283 * 295.00657 * 24 9 8 27 27 H 1.09003 * 109.47242 * 90.00443 * 1 2 3 28 28 H 1.09006 * 109.46916 * 210.00441 * 1 2 3 29 29 H 1.08994 * 109.47175 * 330.00118 * 1 2 3 30 30 H 1.08003 * 120.01075 * 0.02562 * 3 2 1 31 31 H 1.07996 * 120.01197 * 179.73163 * 6 4 3 32 32 H 1.07991 * 119.98927 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.46648 * 299.99886 * 14 12 11 34 34 H 1.09001 * 109.47210 * 59.99886 * 14 12 11 35 35 H 0.96999 * 120.00405 * 179.97438 * 19 18 16 36 36 H 0.96700 * 116.99729 * 179.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1971 0.0000 4 6 3.5822 1.1968 -0.0005 5 9 4.2586 2.3663 0.0000 6 6 4.2733 -0.0033 -0.0005 7 6 3.5806 -1.1988 -0.0005 8 6 2.1978 -1.1973 0.0005 9 6 1.4435 -2.5019 0.0005 10 1 0.5326 -2.3948 0.5896 11 8 2.2750 -3.5418 0.5796 12 6 1.6454 -4.5404 1.2185 13 8 0.4393 -4.5455 1.2910 14 6 2.4428 -5.6551 1.8452 15 16 1.3164 -6.8388 2.6235 16 6 2.4815 -7.9994 3.2561 17 1 3.5387 -7.8423 3.1010 18 6 2.0407 -9.1149 3.9545 19 7 0.7522 -9.3061 4.1439 20 14 3.2760 -10.3450 4.6257 21 1 3.6722 -9.9486 6.0008 22 1 2.6613 -11.6965 4.6578 23 1 4.4765 -10.3679 3.7519 24 6 1.0853 -2.8750 -1.4149 25 8 1.5621 -3.8649 -1.9178 26 8 0.2369 -2.1077 -2.1171 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5138 30 1 1.6578 2.1325 0.0004 31 1 5.3532 -0.0047 -0.0053 32 1 4.1193 -2.1348 -0.0010 33 1 3.0264 -6.1611 1.0761 34 1 3.1141 -5.2426 2.5983 35 1 0.4441 -10.0859 4.6316 36 1 0.0377 -2.3873 -3.0211 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607665398.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:07 Heat of formation + Delta-G solvation = -194.718902 kcal Electronic energy + Delta-G solvation = -24862.907893 eV Core-core repulsion = 20739.228660 eV Total energy + Delta-G solvation = -4123.679232 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.066 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.23284 -41.31044 -39.74062 -39.46474 -36.64664 -36.09502 -33.43758 -32.51323 -32.28240 -29.85331 -28.11184 -27.06855 -25.58545 -23.11980 -22.92829 -21.48013 -20.66862 -18.56970 -18.14933 -17.61189 -17.56761 -17.31483 -16.89265 -16.52433 -15.93036 -15.57234 -15.52299 -14.87952 -14.86165 -14.25980 -14.14491 -13.96792 -13.80153 -13.57344 -13.50973 -12.86096 -12.73013 -12.57286 -12.43707 -12.08970 -11.89227 -11.60934 -11.50670 -11.29021 -11.13526 -11.09071 -10.84908 -10.61981 -10.25744 -9.94383 -9.28085 -9.14095 -8.96216 -8.41717 -6.64474 -6.30181 -4.03418 0.61964 0.85578 1.89700 2.04237 2.42797 2.82648 3.14421 3.19365 3.25247 3.28889 3.44610 3.84247 4.06182 4.12153 4.32041 4.43102 4.60571 4.75383 4.80651 4.94854 5.05990 5.09970 5.22434 5.36765 5.39321 5.42740 5.56844 5.70493 5.75252 5.84020 5.85875 6.01227 6.09082 6.19406 6.35474 6.48343 7.52899 7.57792 7.90532 8.27601 9.15461 10.77353 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018975 B = 0.002763 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.248609 B =10130.253486 C =10871.944759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.023 4.023 3 C -0.159 4.159 4 C 0.114 3.886 5 F -0.138 7.138 6 C -0.163 4.163 7 C -0.050 4.050 8 C -0.111 4.111 9 C 0.143 3.857 10 H 0.136 0.864 11 O -0.327 6.327 12 C 0.484 3.516 13 O -0.482 6.482 14 C -0.127 4.127 15 S -0.055 6.055 16 C -0.536 4.536 17 H 0.077 0.923 18 C 0.075 3.925 19 N -0.867 5.867 20 Si 0.922 3.078 21 H -0.276 1.276 22 H -0.281 1.281 23 H -0.271 1.271 24 C 0.473 3.527 25 O -0.489 6.489 26 O -0.507 6.507 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.147 0.853 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.270 0.730 36 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.475 21.689 -10.607 24.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.024 4.024 3 C -0.178 4.178 4 C 0.095 3.905 5 F -0.116 7.116 6 C -0.182 4.182 7 C -0.068 4.068 8 C -0.112 4.112 9 C 0.086 3.914 10 H 0.153 0.847 11 O -0.245 6.245 12 C 0.325 3.675 13 O -0.366 6.366 14 C -0.274 4.274 15 S 0.171 5.829 16 C -0.684 4.684 17 H 0.095 0.905 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.748 3.252 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.195 1.195 24 C 0.313 3.687 25 O -0.375 6.375 26 O -0.320 6.320 27 H 0.109 0.891 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.159 0.841 31 H 0.158 0.842 32 H 0.164 0.836 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.080 0.920 36 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 1.065 21.473 -10.201 23.797 hybrid contribution 2.066 -0.800 -0.293 2.234 sum 3.130 20.673 -10.494 23.394 Atomic orbital electron populations 1.21013 0.89672 1.03550 1.03992 1.19498 0.96805 0.90773 0.95285 1.20931 0.92135 0.99039 1.05665 1.17779 0.90178 0.81347 1.01182 1.91513 1.80274 1.46160 1.93694 1.21154 1.01246 0.90827 1.04947 1.20983 0.92986 0.98582 0.94250 1.19054 0.94000 0.91218 1.06918 1.20479 0.96554 0.85235 0.89131 0.84680 1.86688 1.39764 1.33005 1.65071 1.23584 0.87972 0.81287 0.74618 1.90676 1.15244 1.74953 1.55761 1.23330 1.04097 0.96399 1.03619 1.85423 1.08371 1.20733 1.68379 1.22836 0.94321 1.09876 1.41411 0.90477 1.25005 0.95959 0.97278 0.95238 1.70006 1.13185 1.28368 1.38672 0.86108 0.80331 0.79504 0.79232 1.20157 1.20696 1.19539 1.23348 0.75843 0.80772 0.88749 1.90793 1.50553 1.26029 1.70105 1.84479 1.60537 1.54928 1.32009 0.89050 0.90749 0.90706 0.84121 0.84159 0.83559 0.87411 0.87505 0.92025 0.72671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 8.84 36.01 0.32 -0.59 16 2 C -0.02 -0.21 5.88 -104.63 -0.62 -0.83 16 3 C -0.16 -1.35 9.68 -39.52 -0.38 -1.73 16 4 C 0.11 1.08 7.30 -39.42 -0.29 0.79 16 5 F -0.14 -1.36 17.27 2.25 0.04 -1.33 16 6 C -0.16 -1.50 10.03 -39.51 -0.40 -1.90 16 7 C -0.05 -0.52 9.35 -39.59 -0.37 -0.89 16 8 C -0.11 -1.21 5.04 -104.61 -0.53 -1.74 16 9 C 0.14 1.86 2.20 -29.04 -0.06 1.80 16 10 H 0.14 1.71 5.17 -51.93 -0.27 1.44 16 11 O -0.33 -5.10 8.25 -45.90 -0.38 -5.48 16 12 C 0.48 9.11 7.94 36.00 0.29 9.39 16 13 O -0.48 -10.15 15.08 -18.76 -0.28 -10.44 16 14 C -0.13 -2.54 6.27 36.00 0.23 -2.32 16 15 S -0.06 -1.45 20.57 -107.50 -2.21 -3.67 16 16 C -0.54 -14.88 9.50 30.94 0.29 -14.59 16 17 H 0.08 2.02 7.80 -52.48 -0.41 1.61 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -25.54 13.22 55.49 0.73 -24.80 16 20 Si 0.92 20.99 29.55 -169.99 -5.02 15.97 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 C 0.47 6.20 7.61 36.01 0.27 6.47 16 25 O -0.49 -8.17 17.27 -25.40 -0.44 -8.61 16 26 O -0.51 -4.44 11.70 -39.25 -0.46 -4.90 16 27 H 0.09 0.59 7.23 -51.93 -0.38 0.22 16 28 H 0.07 0.59 6.02 -51.93 -0.31 0.28 16 29 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 30 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 31 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.15 1.49 7.34 -52.49 -0.39 1.11 16 33 H 0.11 2.05 8.14 -51.91 -0.42 1.63 16 34 H 0.11 1.93 8.14 -51.92 -0.42 1.50 16 35 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.41 1.92 9.10 45.56 0.41 2.33 16 LS Contribution 340.84 15.07 5.14 5.14 Total: -1.00 -34.47 340.84 -6.81 -41.28 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -2.58 Total: 0.98 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -1.34 Total: -4.14 kcal Atomic # 7 Polarization: -25.54 SS G_CDS: 0.73 Total: -24.80 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -1.56 Total: -29.43 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.47 -6.81 -41.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607665398.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.443 kcal (2) G-P(sol) polarization free energy of solvation -34.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds