Wall clock time and date at job start Tue Mar 31 2020 15:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38217 * 119.98712 * 2 1 4 4 C 1.38434 * 119.97400 * 180.02562 * 3 2 1 5 5 F 1.35099 * 120.02897 * 180.02562 * 4 3 2 6 6 C 1.38485 * 119.94974 * 359.97438 * 4 3 2 7 7 C 1.38176 * 119.97529 * 0.02562 * 6 4 3 8 8 C 1.38227 * 119.98387 * 179.97438 * 2 1 3 9 9 C 1.50697 * 119.97984 * 0.02562 * 8 2 1 10 10 H 1.09006 * 109.46780 * 325.00252 * 9 8 2 11 11 O 1.45198 * 109.47615 * 204.99830 * 9 8 2 12 12 C 1.34229 * 117.00305 * 149.99645 * 11 9 8 13 13 O 1.20832 * 119.99492 * 0.02562 * 12 11 9 14 14 C 1.50696 * 120.00146 * 180.02562 * 12 11 9 15 15 S 1.80991 * 109.47072 * 180.02562 * 14 12 11 16 16 C 1.76198 * 100.00169 * 179.97438 * 15 14 12 17 17 H 1.08005 * 119.99788 * 0.02562 * 16 15 14 18 18 C 1.38794 * 120.00474 * 179.97438 * 16 15 14 19 19 N 1.31634 * 119.99995 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00350 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47510 * 89.99908 * 20 18 16 22 22 H 1.48508 * 109.47232 * 210.00230 * 20 18 16 23 23 H 1.48500 * 109.46887 * 329.99710 * 20 18 16 24 24 C 1.50702 * 109.46995 * 84.99541 * 9 8 2 25 25 O 1.20832 * 119.99638 * 115.00083 * 24 9 8 26 26 O 1.34228 * 120.00283 * 295.00657 * 24 9 8 27 27 H 1.09003 * 109.47242 * 90.00443 * 1 2 3 28 28 H 1.09006 * 109.46916 * 210.00441 * 1 2 3 29 29 H 1.08994 * 109.47175 * 330.00118 * 1 2 3 30 30 H 1.08003 * 120.01075 * 0.02562 * 3 2 1 31 31 H 1.07996 * 120.01197 * 179.73163 * 6 4 3 32 32 H 1.07991 * 119.98927 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.46648 * 299.99886 * 14 12 11 34 34 H 1.09001 * 109.47210 * 59.99886 * 14 12 11 35 35 H 0.96999 * 120.00405 * 179.97438 * 19 18 16 36 36 H 0.96700 * 116.99729 * 179.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1971 0.0000 4 6 3.5822 1.1968 -0.0005 5 9 4.2586 2.3663 0.0000 6 6 4.2733 -0.0033 -0.0005 7 6 3.5806 -1.1988 -0.0005 8 6 2.1978 -1.1973 0.0005 9 6 1.4435 -2.5019 0.0005 10 1 0.5326 -2.3948 0.5896 11 8 2.2750 -3.5418 0.5796 12 6 1.6454 -4.5404 1.2185 13 8 0.4393 -4.5455 1.2910 14 6 2.4428 -5.6551 1.8452 15 16 1.3164 -6.8388 2.6235 16 6 2.4815 -7.9994 3.2561 17 1 3.5387 -7.8423 3.1010 18 6 2.0407 -9.1149 3.9545 19 7 0.7522 -9.3061 4.1439 20 14 3.2760 -10.3450 4.6257 21 1 3.6722 -9.9486 6.0008 22 1 2.6613 -11.6965 4.6578 23 1 4.4765 -10.3679 3.7519 24 6 1.0853 -2.8750 -1.4149 25 8 1.5621 -3.8649 -1.9178 26 8 0.2369 -2.1077 -2.1171 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5138 30 1 1.6578 2.1325 0.0004 31 1 5.3532 -0.0047 -0.0053 32 1 4.1193 -2.1348 -0.0010 33 1 3.0264 -6.1611 1.0761 34 1 3.1141 -5.2426 2.5983 35 1 0.4441 -10.0859 4.6316 36 1 0.0377 -2.3873 -3.0211 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607665398.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:06 Heat of formation + Delta-G solvation = -215.375622 kcal Electronic energy + Delta-G solvation = -24863.803635 eV Core-core repulsion = 20739.228660 eV Total energy + Delta-G solvation = -4124.574975 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.066 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.97546 -42.44916 -40.98430 -40.27843 -37.89072 -37.17810 -34.61586 -34.18829 -33.17736 -31.33209 -29.00334 -27.83376 -27.68416 -24.07559 -23.85970 -22.41575 -21.78099 -20.01914 -19.52519 -18.96580 -18.49252 -18.35948 -17.92329 -17.40275 -16.91196 -16.88342 -16.79675 -16.63609 -16.12240 -15.70879 -15.09130 -14.84309 -14.65580 -14.53923 -14.42568 -14.25639 -14.15205 -13.70875 -13.32842 -13.19930 -12.91136 -12.86316 -12.80564 -12.73624 -12.68183 -12.42370 -12.02657 -11.86091 -11.80272 -11.68538 -11.16180 -10.41193 -9.98170 -9.72572 -8.74770 -8.38137 -6.17965 -0.15450 0.15198 0.71078 0.85789 0.96460 1.37219 1.43520 1.51935 1.60981 1.93475 2.22964 2.47151 2.97268 3.07117 3.17781 3.24670 3.52638 3.58126 3.74118 3.81533 4.04488 4.11722 4.13276 4.31833 4.39676 4.59233 4.66736 4.83695 4.85788 4.87682 5.06172 5.19648 5.27338 5.35167 5.39063 5.41113 5.77580 6.17765 6.42388 6.74934 7.03876 8.71114 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018975 B = 0.002763 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.248609 B =10130.253486 C =10871.944759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.021 4.021 3 C -0.153 4.153 4 C 0.107 3.893 5 F -0.140 7.140 6 C -0.163 4.163 7 C -0.062 4.062 8 C -0.125 4.125 9 C 0.138 3.862 10 H 0.139 0.861 11 O -0.320 6.320 12 C 0.492 3.508 13 O -0.510 6.510 14 C -0.108 4.108 15 S -0.131 6.131 16 C -0.549 4.549 17 H 0.087 0.913 18 C 0.017 3.983 19 N -0.910 5.910 20 Si 0.999 3.001 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.259 1.259 24 C 0.479 3.521 25 O -0.532 6.532 26 O -0.487 6.487 27 H 0.101 0.899 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.166 0.834 31 H 0.156 0.844 32 H 0.143 0.857 33 H 0.120 0.880 34 H 0.130 0.870 35 H 0.273 0.727 36 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.579 23.175 -10.939 25.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.021 4.021 3 C -0.171 4.171 4 C 0.088 3.912 5 F -0.119 7.119 6 C -0.181 4.181 7 C -0.080 4.080 8 C -0.125 4.125 9 C 0.081 3.919 10 H 0.156 0.844 11 O -0.237 6.237 12 C 0.334 3.666 13 O -0.397 6.397 14 C -0.257 4.257 15 S 0.096 5.904 16 C -0.696 4.696 17 H 0.105 0.895 18 C -0.188 4.188 19 N -0.546 5.546 20 Si 0.821 3.179 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.183 1.183 24 C 0.321 3.679 25 O -0.422 6.422 26 O -0.302 6.302 27 H 0.119 0.881 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.183 0.817 31 H 0.174 0.826 32 H 0.160 0.840 33 H 0.138 0.862 34 H 0.148 0.852 35 H 0.082 0.918 36 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 2.164 23.006 -10.563 25.407 hybrid contribution 1.695 -1.049 -0.304 2.017 sum 3.860 21.956 -10.867 24.801 Atomic orbital electron populations 1.21084 0.88354 1.04112 1.04746 1.19668 0.97741 0.90183 0.94536 1.21182 0.91861 0.99758 1.04342 1.17946 0.90710 0.81252 1.01287 1.91510 1.80409 1.46257 1.93728 1.21293 1.02134 0.90373 1.04327 1.21010 0.92962 0.98974 0.95012 1.19032 0.94196 0.90623 1.08674 1.20765 0.96777 0.85133 0.89185 0.84371 1.86627 1.39769 1.32779 1.64518 1.23214 0.87283 0.81620 0.74454 1.90665 1.16294 1.75767 1.56948 1.23113 1.02753 0.95583 1.04205 1.85500 1.12017 1.23277 1.69608 1.23197 0.94740 1.10259 1.41452 0.89510 1.26104 0.98004 0.99371 0.95343 1.70156 1.15467 1.29251 1.39693 0.84938 0.77723 0.76462 0.78784 1.19129 1.20313 1.18284 1.23340 0.75550 0.80176 0.88855 1.90782 1.52442 1.27873 1.71085 1.84426 1.58820 1.53587 1.33332 0.88077 0.91737 0.88625 0.81660 0.82596 0.83965 0.86165 0.85174 0.91812 0.70242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 8.84 71.24 0.63 -0.91 16 2 C -0.02 -0.34 5.88 -19.87 -0.12 -0.45 16 3 C -0.15 -2.19 9.68 22.31 0.22 -1.98 16 4 C 0.11 1.80 7.30 22.38 0.16 1.97 16 5 F -0.14 -2.50 17.27 44.97 0.78 -1.72 16 6 C -0.16 -2.75 10.03 22.31 0.22 -2.53 16 7 C -0.06 -1.22 9.35 22.26 0.21 -1.01 16 8 C -0.12 -2.56 5.04 -19.86 -0.10 -2.66 16 9 C 0.14 3.51 2.20 29.10 0.06 3.58 16 10 H 0.14 3.45 5.17 -2.38 -0.01 3.44 16 11 O -0.32 -9.88 8.25 -45.06 -0.37 -10.25 16 12 C 0.49 18.56 7.94 71.23 0.57 19.13 16 13 O -0.51 -21.86 15.08 21.95 0.33 -21.53 16 14 C -0.11 -4.33 6.27 71.23 0.45 -3.88 16 15 S -0.13 -7.03 20.57 -56.49 -1.16 -8.20 16 16 C -0.55 -30.58 9.50 67.95 0.65 -29.94 16 17 H 0.09 4.49 7.80 -2.91 -0.02 4.47 16 18 C 0.02 0.95 5.49 84.86 0.47 1.41 16 19 N -0.91 -54.47 13.22 21.65 0.29 -54.18 16 20 Si 1.00 42.75 29.55 68.60 2.03 44.78 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 23 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 24 C 0.48 12.24 7.61 71.24 0.54 12.78 16 25 O -0.53 -17.79 17.27 28.30 0.49 -17.31 16 26 O -0.49 -7.70 11.70 -51.40 -0.60 -8.30 16 27 H 0.10 1.03 7.23 -2.39 -0.02 1.02 16 28 H 0.06 0.93 6.02 -2.38 -0.01 0.92 16 29 H 0.10 0.77 8.08 -2.39 -0.02 0.75 16 30 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 31 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 32 H 0.14 2.85 7.34 -2.92 -0.02 2.83 16 33 H 0.12 4.51 8.14 -2.39 -0.02 4.49 16 34 H 0.13 4.57 8.14 -2.39 -0.02 4.55 16 35 H 0.27 15.16 8.31 -92.71 -0.77 14.38 16 36 H 0.43 3.14 9.10 -74.06 -0.67 2.47 16 Total: -1.00 -75.44 340.84 6.21 -69.23 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.48 Total: 11.96 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 3.95 Total: -4.49 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.29 Total: -54.18 kcal Atomic # 8 Polarization: -57.23 SS G_CDS: -0.15 Total: -57.38 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.78 Total: -1.72 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: -7.03 SS G_CDS: -1.16 Total: -8.20 kcal Total: -75.44 6.21 -69.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607665398.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.147 kcal (2) G-P(sol) polarization free energy of solvation -75.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds