Wall clock time and date at job start Tue Mar 31 2020 15:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 120.00277 * 2 1 4 4 H 1.48496 * 109.47005 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46712 * 299.99288 * 3 2 1 6 6 H 1.48493 * 109.47359 * 59.99644 * 3 2 1 7 7 C 1.38802 * 119.99488 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99571 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00342 * 0.02562 * 7 2 1 10 10 C 1.80994 * 99.99992 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46867 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46936 * 179.97438 * 11 10 9 13 13 O 1.45203 * 109.47165 * 180.02562 * 12 11 10 14 14 C 1.34704 * 116.99960 * 180.02562 * 13 12 11 15 15 O 1.21459 * 120.00292 * 0.02562 * 14 13 12 16 16 C 1.47787 * 119.99922 * 180.02562 * 14 13 12 17 17 C 1.39689 * 120.02211 * 0.02562 * 16 14 13 18 18 C 1.37699 * 120.03066 * 180.23371 * 17 16 14 19 19 C 1.39682 * 120.07815 * 359.49047 * 18 17 16 20 20 C 1.47949 * 119.97777 * 180.25594 * 19 18 17 21 21 O 1.21446 * 119.99805 * 180.24903 * 20 19 18 22 22 O 1.34680 * 120.00277 * 0.25367 * 20 19 18 23 23 C 1.39456 * 120.04183 * 0.50704 * 19 18 17 24 24 C 1.38199 * 119.96951 * 359.74576 * 23 19 18 25 25 F 1.35102 * 120.04029 * 179.97438 * 24 23 19 26 26 H 0.97006 * 119.99810 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47311 * 60.00239 * 10 9 7 28 28 H 1.08997 * 109.47132 * 299.99358 * 10 9 7 29 29 H 1.09000 * 109.47346 * 60.00436 * 11 10 9 30 30 H 1.08994 * 109.47602 * 300.00295 * 11 10 9 31 31 H 1.09003 * 109.46908 * 60.00336 * 12 11 10 32 32 H 1.08994 * 109.47557 * 300.00741 * 12 11 10 33 33 H 1.08002 * 119.98106 * 359.94842 * 17 16 14 34 34 H 1.07993 * 119.96050 * 179.72156 * 18 17 16 35 35 H 0.96702 * 117.00395 * 180.02562 * 22 20 19 36 36 H 1.08005 * 120.01696 * 179.77509 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8917 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9790 -5.3243 0.0012 12 6 3.1510 -6.3078 0.0005 13 8 2.6418 -7.6676 0.0005 14 6 3.5513 -8.6612 0.0005 15 8 4.7373 -8.3990 0.0010 16 6 3.1061 -10.0705 0.0000 17 6 1.7423 -10.3726 -0.0011 18 6 1.3273 -11.6856 0.0032 19 6 2.2689 -12.7173 -0.0021 20 6 1.8205 -14.1273 -0.0031 21 8 2.6388 -15.0246 -0.0031 22 8 0.5049 -14.4156 -0.0042 23 6 3.6312 -12.4194 -0.0010 24 6 4.0498 -11.1023 -0.0001 25 9 5.3692 -10.8119 0.0014 26 1 -0.4850 0.8401 -0.0004 27 1 3.1243 -3.7315 0.8905 28 1 3.1242 -3.7315 -0.8895 29 1 1.3702 -5.4847 -0.8886 30 1 1.3706 -5.4841 0.8913 31 1 3.7602 -6.1476 0.8901 32 1 3.7591 -6.1479 -0.8898 33 1 1.0130 -9.5760 -0.0007 34 1 0.2727 -11.9178 0.0069 35 1 0.2605 -15.3512 -0.0044 36 1 4.3589 -13.2175 -0.0014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608186659.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:28 Heat of formation + Delta-G solvation = -205.179033 kcal Electronic energy + Delta-G solvation = -23405.001922 eV Core-core repulsion = 19280.869105 eV Total energy + Delta-G solvation = -4124.132817 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.066 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.40976 -41.14030 -40.58136 -38.91234 -36.82851 -36.74364 -33.66601 -32.49233 -32.41133 -31.36373 -27.27194 -26.03297 -25.40750 -23.51077 -22.66737 -21.50553 -21.32418 -19.09074 -18.43636 -18.14930 -17.45195 -17.19525 -16.88236 -16.49619 -16.44032 -16.34667 -15.93586 -15.05202 -14.84412 -14.69880 -14.62091 -14.31038 -13.74890 -13.56123 -13.15494 -13.13512 -12.74465 -12.74184 -12.20679 -12.18182 -12.12090 -11.42554 -11.38275 -11.21708 -11.05861 -10.95491 -10.80554 -10.65391 -10.38512 -9.98190 -9.67061 -9.50817 -9.11270 -8.39465 -6.60019 -6.27986 -3.99128 -0.52004 0.44255 1.48993 2.15537 2.26071 2.27380 2.98998 3.18710 3.19474 3.27738 3.48356 3.50812 3.95854 4.09337 4.17168 4.26240 4.38067 4.44304 4.92641 5.03418 5.08974 5.09532 5.16648 5.32034 5.33512 5.36855 5.41819 5.43228 5.71201 5.79045 5.81440 5.94267 6.05956 6.27496 6.38842 6.60462 7.19397 7.43739 7.56689 8.32190 9.18796 10.80205 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.030436 B = 0.001796 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.727377 B =15589.643956 C =16483.621733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.518 4.518 8 H 0.074 0.926 9 S -0.123 6.123 10 C -0.115 4.115 11 C -0.097 4.097 12 C 0.074 3.926 13 O -0.347 6.347 14 C 0.502 3.498 15 O -0.486 6.486 16 C -0.123 4.123 17 C -0.044 4.044 18 C -0.085 4.085 19 C -0.069 4.069 20 C 0.529 3.471 21 O -0.503 6.503 22 O -0.506 6.506 23 C -0.105 4.105 24 C 0.155 3.845 25 F -0.106 7.106 26 H 0.267 0.733 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.163 0.837 34 H 0.157 0.843 35 H 0.420 0.580 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.268 -28.651 0.002 28.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.666 4.666 8 H 0.092 0.908 9 S 0.105 5.895 10 C -0.264 4.264 11 C -0.136 4.136 12 C -0.001 4.001 13 O -0.263 6.263 14 C 0.345 3.655 15 O -0.374 6.374 16 C -0.126 4.126 17 C -0.062 4.062 18 C -0.103 4.103 19 C -0.071 4.071 20 C 0.372 3.628 21 O -0.391 6.391 22 O -0.318 6.318 23 C -0.124 4.124 24 C 0.135 3.865 25 F -0.084 7.084 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.181 0.819 34 H 0.175 0.825 35 H 0.280 0.720 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.724 -28.407 0.002 28.416 hybrid contribution 2.114 0.809 -0.001 2.264 sum 2.838 -27.597 0.001 27.743 Atomic orbital electron populations 1.70028 1.05925 1.27333 1.47177 1.25024 0.95108 0.99157 0.94498 0.86088 0.79658 0.81718 0.77916 1.19574 1.20534 1.20529 1.22742 0.94640 0.90635 1.58628 0.90758 1.84639 1.08710 0.99274 1.96887 1.23183 1.03523 0.96247 1.03436 1.21297 0.96335 0.91533 1.04420 1.23381 0.98019 0.75731 1.02980 1.86486 1.39348 1.17021 1.83491 1.20744 0.84506 0.86113 0.74163 1.90924 1.17601 1.84726 1.44166 1.19576 0.94611 0.90280 1.08083 1.21520 0.93866 0.97671 0.93150 1.21558 1.00903 0.91134 0.96712 1.18990 0.93206 0.90567 1.04291 1.20669 0.80411 0.89277 0.72422 1.90933 1.54566 1.48381 1.45253 1.84525 1.25647 1.36178 1.85463 1.21140 0.95902 0.95292 1.00086 1.17381 0.78350 0.91818 0.98949 1.91659 1.30127 1.93928 1.92673 0.92283 0.91671 0.91666 0.90225 0.90216 0.90810 0.90815 0.81924 0.82534 0.72001 0.82156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.52 13.22 55.49 0.73 -24.79 16 2 C 0.07 1.99 5.49 -17.43 -0.10 1.90 16 3 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.59 9.50 30.94 0.29 -14.29 16 8 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 9 S -0.12 -3.12 21.44 -107.50 -2.30 -5.42 16 10 C -0.12 -2.21 5.67 37.16 0.21 -2.00 16 11 C -0.10 -1.48 5.60 -26.73 -0.15 -1.63 16 12 C 0.07 0.99 5.48 37.16 0.20 1.20 16 13 O -0.35 -4.33 9.46 -40.50 -0.38 -4.72 16 14 C 0.50 6.37 7.90 34.64 0.27 6.64 16 15 O -0.49 -7.62 15.11 -19.23 -0.29 -7.91 16 16 C -0.12 -1.19 5.88 -104.86 -0.62 -1.81 16 17 C -0.04 -0.30 9.60 -39.24 -0.38 -0.67 16 18 C -0.08 -0.45 9.60 -39.24 -0.38 -0.83 16 19 C -0.07 -0.46 5.87 -104.93 -0.62 -1.07 16 20 C 0.53 3.46 8.28 34.71 0.29 3.74 16 21 O -0.50 -4.75 17.12 -19.22 -0.33 -5.08 16 22 O -0.51 -1.81 12.67 -40.44 -0.51 -2.32 16 23 C -0.11 -0.80 9.56 -39.14 -0.37 -1.18 16 24 C 0.16 1.49 7.28 -39.00 -0.28 1.21 16 25 F -0.11 -1.26 15.53 2.25 0.03 -1.23 16 26 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 28 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.16 0.88 7.60 -52.49 -0.40 0.48 16 34 H 0.16 0.49 7.59 -52.49 -0.40 0.09 16 35 H 0.42 -0.26 9.11 45.56 0.42 0.16 16 36 H 0.16 1.10 7.63 -52.48 -0.40 0.70 16 LS Contribution 348.00 15.07 5.24 5.24 Total: -1.00 -34.80 348.00 -7.31 -42.11 By element: Atomic # 1 Polarization: -0.48 SS G_CDS: -2.86 Total: -3.34 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -1.62 Total: -8.80 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.73 Total: -24.79 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -1.52 Total: -20.02 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.03 Total: -1.23 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.30 Total: -5.42 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.80 -7.31 -42.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186659.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.065 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds