Wall clock time and date at job start Tue Mar 31 2020 15:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 120.00277 * 2 1 4 4 H 1.48496 * 109.47005 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46712 * 299.99288 * 3 2 1 6 6 H 1.48493 * 109.47359 * 59.99644 * 3 2 1 7 7 C 1.38802 * 119.99488 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99571 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00342 * 0.02562 * 7 2 1 10 10 C 1.80994 * 99.99992 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46867 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46936 * 179.97438 * 11 10 9 13 13 O 1.45203 * 109.47165 * 180.02562 * 12 11 10 14 14 C 1.34704 * 116.99960 * 180.02562 * 13 12 11 15 15 O 1.21459 * 120.00292 * 0.02562 * 14 13 12 16 16 C 1.47787 * 119.99922 * 180.02562 * 14 13 12 17 17 C 1.39689 * 120.02211 * 0.02562 * 16 14 13 18 18 C 1.37699 * 120.03066 * 180.23371 * 17 16 14 19 19 C 1.39682 * 120.07815 * 359.49047 * 18 17 16 20 20 C 1.47949 * 119.97777 * 180.25594 * 19 18 17 21 21 O 1.21446 * 119.99805 * 180.24903 * 20 19 18 22 22 O 1.34680 * 120.00277 * 0.25367 * 20 19 18 23 23 C 1.39456 * 120.04183 * 0.50704 * 19 18 17 24 24 C 1.38199 * 119.96951 * 359.74576 * 23 19 18 25 25 F 1.35102 * 120.04029 * 179.97438 * 24 23 19 26 26 H 0.97006 * 119.99810 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47311 * 60.00239 * 10 9 7 28 28 H 1.08997 * 109.47132 * 299.99358 * 10 9 7 29 29 H 1.09000 * 109.47346 * 60.00436 * 11 10 9 30 30 H 1.08994 * 109.47602 * 300.00295 * 11 10 9 31 31 H 1.09003 * 109.46908 * 60.00336 * 12 11 10 32 32 H 1.08994 * 109.47557 * 300.00741 * 12 11 10 33 33 H 1.08002 * 119.98106 * 359.94842 * 17 16 14 34 34 H 1.07993 * 119.96050 * 179.72156 * 18 17 16 35 35 H 0.96702 * 117.00395 * 180.02562 * 22 20 19 36 36 H 1.08005 * 120.01696 * 179.77509 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8917 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9790 -5.3243 0.0012 12 6 3.1510 -6.3078 0.0005 13 8 2.6418 -7.6676 0.0005 14 6 3.5513 -8.6612 0.0005 15 8 4.7373 -8.3990 0.0010 16 6 3.1061 -10.0705 0.0000 17 6 1.7423 -10.3726 -0.0011 18 6 1.3273 -11.6856 0.0032 19 6 2.2689 -12.7173 -0.0021 20 6 1.8205 -14.1273 -0.0031 21 8 2.6388 -15.0246 -0.0031 22 8 0.5049 -14.4156 -0.0042 23 6 3.6312 -12.4194 -0.0010 24 6 4.0498 -11.1023 -0.0001 25 9 5.3692 -10.8119 0.0014 26 1 -0.4850 0.8401 -0.0004 27 1 3.1243 -3.7315 0.8905 28 1 3.1242 -3.7315 -0.8895 29 1 1.3702 -5.4847 -0.8886 30 1 1.3706 -5.4841 0.8913 31 1 3.7602 -6.1476 0.8901 32 1 3.7591 -6.1479 -0.8898 33 1 1.0130 -9.5760 -0.0007 34 1 0.2727 -11.9178 0.0069 35 1 0.2605 -15.3512 -0.0044 36 1 4.3589 -13.2175 -0.0014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608186659.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:28 Heat of formation + Delta-G solvation = -226.433166 kcal Electronic energy + Delta-G solvation = -23405.923571 eV Core-core repulsion = 19280.869105 eV Total energy + Delta-G solvation = -4125.054466 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.066 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.19887 -41.83627 -41.37238 -39.53922 -37.89545 -37.18678 -34.95661 -34.58403 -33.12787 -31.94807 -28.44400 -27.67507 -26.67459 -24.19621 -23.31747 -22.73245 -22.14236 -19.72423 -19.55838 -19.05871 -18.83284 -18.06611 -17.90316 -17.25755 -17.04324 -17.00426 -16.89750 -16.62571 -16.28058 -15.94879 -15.55239 -15.10615 -14.88448 -14.36613 -14.26528 -14.23707 -13.82115 -13.74185 -13.51703 -13.15140 -12.96644 -12.72440 -12.63344 -12.61682 -12.42556 -12.40910 -12.02265 -11.78150 -11.55581 -11.46436 -11.15771 -10.61565 -10.35294 -10.11232 -8.66725 -8.38352 -6.14004 -1.16074 -0.13329 0.81927 1.16573 1.35778 1.38575 1.50648 1.53451 1.75052 1.80276 2.26896 2.37630 2.85883 2.96406 3.21936 3.34109 3.41467 3.75539 3.79789 3.85346 3.85466 3.95616 4.14896 4.32581 4.33581 4.49936 4.66063 4.69453 4.78626 4.82592 4.94093 5.03152 5.06410 5.30137 5.38311 5.40717 5.48341 6.18111 6.44075 6.86749 7.04773 8.71073 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.030436 B = 0.001796 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.727377 B =15589.643956 C =16483.621733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.017 3.983 3 Si 0.993 3.007 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.541 4.541 8 H 0.073 0.927 9 S -0.180 6.180 10 C -0.094 4.094 11 C -0.084 4.084 12 C 0.080 3.920 13 O -0.340 6.340 14 C 0.503 3.497 15 O -0.523 6.523 16 C -0.139 4.139 17 C -0.033 4.033 18 C -0.063 4.063 19 C -0.068 4.068 20 C 0.538 3.462 21 O -0.537 6.537 22 O -0.493 6.493 23 C -0.103 4.103 24 C 0.136 3.864 25 F -0.127 7.127 26 H 0.272 0.728 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.181 0.819 34 H 0.189 0.811 35 H 0.440 0.560 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.395 -29.623 0.003 29.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.189 4.189 3 Si 0.815 3.185 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.689 4.689 8 H 0.091 0.909 9 S 0.049 5.951 10 C -0.243 4.243 11 C -0.123 4.123 12 C 0.005 3.995 13 O -0.256 6.256 14 C 0.349 3.651 15 O -0.414 6.414 16 C -0.141 4.141 17 C -0.051 4.051 18 C -0.081 4.081 19 C -0.069 4.069 20 C 0.383 3.617 21 O -0.428 6.428 22 O -0.308 6.308 23 C -0.122 4.122 24 C 0.116 3.884 25 F -0.105 7.105 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.198 0.802 34 H 0.207 0.793 35 H 0.303 0.697 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.187 -29.407 0.003 29.407 hybrid contribution 2.291 0.944 -0.002 2.478 sum 2.104 -28.463 0.002 28.540 Atomic orbital electron populations 1.70145 1.07564 1.28538 1.47929 1.26032 0.96040 1.03011 0.93767 0.84982 0.78394 0.76804 0.78300 1.18843 1.19685 1.19674 1.23099 0.94846 0.92086 1.58873 0.90887 1.84567 1.12886 1.00628 1.97046 1.23083 1.00881 0.96717 1.03637 1.21105 0.96825 0.89411 1.04920 1.23133 0.96974 0.76149 1.03220 1.86465 1.39119 1.16539 1.83473 1.21262 0.83996 0.87018 0.72872 1.90906 1.19060 1.85268 1.46135 1.19529 0.95988 0.88302 1.10284 1.21738 0.92605 0.98872 0.91859 1.21863 1.02107 0.89902 0.94212 1.19132 0.92918 0.91332 1.03537 1.20543 0.80974 0.88665 0.71551 1.90935 1.55662 1.49223 1.46986 1.84477 1.23591 1.38176 1.84529 1.21154 0.96792 0.94412 0.99807 1.17585 0.77591 0.92657 1.00533 1.91600 1.31642 1.94157 1.93102 0.91898 0.91426 0.91422 0.89755 0.89746 0.90674 0.90679 0.80169 0.79330 0.69657 0.81922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.58 13.22 21.65 0.29 -53.29 16 2 C 0.02 0.93 5.49 84.86 0.47 1.40 16 3 Si 0.99 43.41 29.55 68.60 2.03 45.44 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.54 -30.67 9.50 67.95 0.65 -30.03 16 8 H 0.07 4.01 7.80 -2.91 -0.02 3.98 16 9 S -0.18 -9.20 21.44 -56.49 -1.21 -10.41 16 10 C -0.09 -3.57 5.67 71.98 0.41 -3.16 16 11 C -0.08 -2.46 5.60 30.60 0.17 -2.28 16 12 C 0.08 2.08 5.48 71.98 0.39 2.48 16 13 O -0.34 -8.04 9.46 -56.14 -0.53 -8.58 16 14 C 0.50 12.57 7.90 70.35 0.56 13.13 16 15 O -0.52 -16.68 15.11 19.97 0.30 -16.38 16 16 C -0.14 -2.57 5.88 -20.02 -0.12 -2.68 16 17 C -0.03 -0.36 9.60 22.49 0.22 -0.14 16 18 C -0.06 -0.46 9.60 22.49 0.22 -0.24 16 19 C -0.07 -0.74 5.87 -20.06 -0.12 -0.86 16 20 C 0.54 5.76 8.28 70.40 0.58 6.34 16 21 O -0.54 -9.43 17.12 20.01 0.34 -9.09 16 22 O -0.49 -1.81 12.67 -55.89 -0.71 -2.51 16 23 C -0.10 -1.50 9.56 22.55 0.22 -1.28 16 24 C 0.14 2.62 7.28 22.64 0.16 2.79 16 25 F -0.13 -3.17 15.53 44.97 0.70 -2.47 16 26 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 27 H 0.07 2.52 8.14 -2.40 -0.02 2.50 16 28 H 0.07 2.53 8.14 -2.40 -0.02 2.51 16 29 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.18 1.33 7.60 -2.91 -0.02 1.31 16 34 H 0.19 0.22 7.59 -2.91 -0.02 0.20 16 35 H 0.44 -2.00 9.11 -74.06 -0.67 -2.68 16 36 H 0.16 2.23 7.63 -2.91 -0.02 2.21 16 Total: -1.00 -76.43 348.00 5.48 -70.96 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: 0.47 Total: 0.89 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 3.80 Total: -14.55 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.29 Total: -53.29 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -0.59 Total: -36.55 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.70 Total: -2.47 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -9.20 SS G_CDS: -1.21 Total: -10.41 kcal Total: -76.43 5.48 -70.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186659.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.477 kcal (2) G-P(sol) polarization free energy of solvation -76.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds