Wall clock time and date at job start Tue Mar 31 2020 15:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99958 * 2 1 4 4 H 1.48496 * 109.46892 * 269.99719 * 3 2 1 5 5 H 1.48496 * 109.47021 * 29.99857 * 3 2 1 6 6 H 1.48503 * 109.46867 * 149.99996 * 3 2 1 7 7 C 1.37877 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00335 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99888 * 179.97438 * 7 2 1 10 10 N 1.46499 * 109.47288 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00286 * 180.02562 * 10 9 7 12 12 O 1.21353 * 119.99677 * 0.02562 * 11 10 9 13 13 C 1.49359 * 120.00034 * 180.02562 * 11 10 9 14 14 O 1.21366 * 120.00396 * 359.97438 * 13 11 10 15 15 N 1.34779 * 120.00034 * 179.97438 * 13 11 10 16 16 C 1.39259 * 120.00274 * 185.27985 * 15 13 11 17 17 C 1.39127 * 119.88128 * 33.64285 * 16 15 13 18 18 C 1.37899 * 120.12403 * 179.97438 * 17 16 15 19 19 F 1.35106 * 120.06318 * 180.02562 * 18 17 16 20 20 C 1.40140 * 119.87980 * 0.02562 * 18 17 16 21 21 C 1.47160 * 120.12332 * 179.97438 * 20 18 17 22 22 O 1.21533 * 120.00101 * 90.00089 * 21 20 18 23 23 O 1.34786 * 119.99649 * 269.72809 * 21 20 18 24 24 C 1.40136 * 119.75659 * 0.25536 * 20 18 17 25 25 F 1.35101 * 120.06092 * 179.72355 * 24 20 18 26 26 C 1.37908 * 119.87899 * 359.44586 * 24 20 18 27 27 H 0.96994 * 119.99998 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46467 * 60.00562 * 9 7 2 29 29 H 1.08997 * 109.47200 * 300.00903 * 9 7 2 30 30 H 0.97003 * 120.00110 * 0.02562 * 10 9 7 31 31 H 0.97005 * 119.99756 * 5.28433 * 15 13 11 32 32 H 1.08009 * 119.93981 * 0.02562 * 17 16 15 33 33 H 0.96700 * 116.99698 * 180.27819 * 23 21 20 34 34 H 1.08004 * 119.93754 * 180.27348 * 26 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9999 -2.5753 0.0001 11 6 5.3250 -2.8216 0.0001 12 8 6.1136 -1.8992 0.0006 13 6 5.8228 -4.2298 -0.0003 14 8 5.0342 -5.1523 -0.0003 15 7 7.1479 -4.4761 -0.0008 16 6 7.6131 -5.7840 -0.1122 17 6 6.9092 -6.7070 -0.8791 18 6 7.3655 -8.0033 -0.9933 19 9 6.6812 -8.8985 -1.7388 20 6 8.5403 -8.3904 -0.3346 21 6 9.0318 -9.7725 -0.4523 22 8 9.7988 -10.0706 -1.3467 23 8 8.6357 -10.7065 0.4351 24 6 9.2422 -7.4582 0.4413 25 9 10.3724 -7.8262 1.0834 26 6 8.7802 -6.1628 0.5436 27 1 -0.4850 0.8400 0.0004 28 1 3.8751 -0.6797 0.8896 29 1 3.8746 -0.6807 -0.8904 30 1 3.3696 -3.3126 0.0001 31 1 7.7777 -3.7423 0.0766 32 1 6.0040 -6.4075 -1.3867 33 1 8.9884 -11.5994 0.3195 34 1 9.3228 -5.4424 1.1378 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610621381.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:41 Heat of formation + Delta-G solvation = -210.101320 kcal Electronic energy + Delta-G solvation = -26388.189648 eV Core-core repulsion = 21729.922959 eV Total energy + Delta-G solvation = -4658.266689 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.68309 -49.58714 -41.35593 -40.59748 -39.27253 -38.10102 -36.55499 -35.58879 -34.51231 -32.51662 -31.12217 -31.03231 -28.57036 -26.15291 -24.09081 -23.79913 -22.36442 -21.68387 -20.45618 -19.43771 -18.92019 -18.65353 -17.91960 -17.86675 -16.98520 -16.63034 -16.57394 -16.36658 -15.89182 -15.83562 -15.76235 -15.55047 -15.42189 -15.17088 -14.40817 -14.25210 -14.20403 -13.53780 -13.37112 -13.06346 -12.84379 -12.61763 -12.54110 -12.38491 -12.02390 -11.70099 -11.34116 -11.18623 -10.91565 -10.89245 -10.11933 -9.66832 -9.60705 -9.40083 -9.01464 -8.95766 -8.55364 -6.32846 -4.37742 -0.01812 0.36527 1.33874 1.47861 2.01519 2.38698 2.67068 3.09369 3.16781 3.24687 3.24944 3.29290 3.58232 3.69735 4.13842 4.20917 4.31025 4.43404 4.52630 4.70842 5.01154 5.03171 5.14780 5.19224 5.46936 5.58536 5.88374 6.08761 6.43688 6.56829 6.73343 6.79740 7.12741 7.29158 7.31812 7.79856 8.21847 8.27916 8.66067 9.23777 10.78753 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.029732 B = 0.002297 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.517273 B =12189.261599 C =12822.735552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.080 3.920 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.551 4.551 8 H 0.083 0.917 9 C 0.218 3.782 10 N -0.660 5.660 11 C 0.495 3.505 12 O -0.533 6.533 13 C 0.513 3.487 14 O -0.487 6.487 15 N -0.649 5.649 16 C 0.240 3.760 17 C -0.171 4.171 18 C 0.198 3.802 19 F -0.114 7.114 20 C -0.207 4.207 21 C 0.543 3.457 22 O -0.489 6.489 23 O -0.501 6.501 24 C 0.196 3.804 25 F -0.116 7.116 26 C -0.191 4.191 27 H 0.270 0.730 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.411 0.589 31 H 0.432 0.568 32 H 0.168 0.832 33 H 0.417 0.583 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.869 -16.191 1.065 24.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.124 4.124 3 Si 0.703 3.297 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.589 4.589 8 H 0.101 0.899 9 C 0.096 3.904 10 N -0.309 5.309 11 C 0.273 3.727 12 O -0.412 6.412 13 C 0.296 3.704 14 O -0.358 6.358 15 N -0.296 5.296 16 C 0.143 3.857 17 C -0.192 4.192 18 C 0.178 3.822 19 F -0.092 7.092 20 C -0.211 4.211 21 C 0.383 3.617 22 O -0.376 6.376 23 O -0.313 6.313 24 C 0.176 3.824 25 F -0.094 7.094 26 C -0.212 4.212 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.248 0.752 31 H 0.272 0.728 32 H 0.185 0.815 33 H 0.276 0.724 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 18.634 -15.697 0.855 24.379 hybrid contribution 0.627 0.030 -0.053 0.630 sum 19.261 -15.667 0.802 24.841 Atomic orbital electron populations 1.69868 1.06222 1.27648 1.48518 1.24783 0.94822 0.99146 0.93694 0.86823 0.80511 0.83232 0.79139 1.19707 1.20715 1.18491 1.21022 0.87992 0.95596 1.54297 0.89860 1.19765 0.95951 0.77044 0.97601 1.46158 1.04715 1.12588 1.67418 1.19512 0.84848 0.87459 0.80873 1.90755 1.55243 1.44746 1.50458 1.20998 0.81979 0.91462 0.76000 1.90807 1.54823 1.45841 1.44310 1.43217 1.08497 1.06926 1.70992 1.17102 0.92029 0.84961 0.91624 1.21103 1.04304 0.91251 1.02563 1.16761 0.87872 0.86964 0.90630 1.91606 1.77936 1.66506 1.73175 1.18818 1.00432 0.92422 1.09380 1.20187 0.77459 0.85311 0.78694 1.90964 1.32330 1.81323 1.32968 1.84692 1.69128 1.23808 1.53654 1.16628 0.83103 0.91514 0.91198 1.91596 1.47189 1.91897 1.78755 1.20771 0.99812 0.95530 1.05101 0.92025 0.94713 0.95174 0.75246 0.72761 0.81503 0.72355 0.82102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.29 13.96 55.43 0.77 -24.52 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.88 20.00 27.47 -169.99 -4.67 15.33 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 7 C -0.55 -14.26 9.83 -34.44 -0.34 -14.60 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 9 C 0.22 4.85 4.50 -5.19 -0.02 4.83 16 10 N -0.66 -12.25 5.54 -61.94 -0.34 -12.60 16 11 C 0.49 8.11 7.89 -11.63 -0.09 8.02 16 12 O -0.53 -9.64 16.48 5.49 0.09 -9.55 16 13 C 0.51 6.77 7.61 -11.63 -0.09 6.68 16 14 O -0.49 -7.14 14.15 5.48 0.08 -7.06 16 15 N -0.65 -6.35 5.30 -10.31 -0.05 -6.40 16 16 C 0.24 2.23 6.26 -83.83 -0.53 1.70 16 17 C -0.17 -1.77 8.60 -39.38 -0.34 -2.11 16 18 C 0.20 2.09 7.28 -38.99 -0.28 1.81 16 19 F -0.11 -1.29 16.83 2.25 0.04 -1.25 16 20 C -0.21 -2.13 5.76 -104.85 -0.60 -2.74 16 21 C 0.54 5.77 7.03 34.35 0.24 6.01 16 22 O -0.49 -6.37 17.90 -19.29 -0.35 -6.72 16 23 O -0.50 -3.91 13.44 -40.73 -0.55 -4.46 16 24 C 0.20 1.77 7.28 -38.99 -0.28 1.49 16 25 F -0.12 -1.08 16.83 2.25 0.04 -1.04 16 26 C -0.19 -1.45 9.91 -39.37 -0.39 -1.84 16 27 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.04 0.80 7.20 -51.93 -0.37 0.43 16 29 H 0.03 0.69 7.57 -51.93 -0.39 0.29 16 30 H 0.41 7.23 7.79 -40.82 -0.32 6.91 16 31 H 0.43 3.37 8.29 -40.82 -0.34 3.03 16 32 H 0.17 1.85 6.41 -52.48 -0.34 1.51 16 33 H 0.42 1.17 9.11 45.56 0.42 1.58 16 34 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 LS Contribution 326.66 15.07 4.92 4.92 Total: -1.00 -32.09 326.66 -4.19 -36.28 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -1.35 Total: 5.76 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: -2.82 Total: 11.31 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.38 Total: -43.52 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.72 Total: -27.79 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.08 Total: -2.29 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.67 Total: 15.33 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.09 -4.19 -36.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621381.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.821 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds