Wall clock time and date at job start Tue Mar 31 2020 15:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99958 * 2 1 4 4 H 1.48496 * 109.46892 * 269.99719 * 3 2 1 5 5 H 1.48496 * 109.47021 * 29.99857 * 3 2 1 6 6 H 1.48503 * 109.46867 * 149.99996 * 3 2 1 7 7 C 1.37877 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00335 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99888 * 179.97438 * 7 2 1 10 10 N 1.46499 * 109.47288 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00286 * 180.02562 * 10 9 7 12 12 O 1.21353 * 119.99677 * 0.02562 * 11 10 9 13 13 C 1.49359 * 120.00034 * 180.02562 * 11 10 9 14 14 O 1.21366 * 120.00396 * 359.97438 * 13 11 10 15 15 N 1.34779 * 120.00034 * 179.97438 * 13 11 10 16 16 C 1.39259 * 120.00274 * 185.27985 * 15 13 11 17 17 C 1.39127 * 119.88128 * 33.64285 * 16 15 13 18 18 C 1.37899 * 120.12403 * 179.97438 * 17 16 15 19 19 F 1.35106 * 120.06318 * 180.02562 * 18 17 16 20 20 C 1.40140 * 119.87980 * 0.02562 * 18 17 16 21 21 C 1.47160 * 120.12332 * 179.97438 * 20 18 17 22 22 O 1.21533 * 120.00101 * 90.00089 * 21 20 18 23 23 O 1.34786 * 119.99649 * 269.72809 * 21 20 18 24 24 C 1.40136 * 119.75659 * 0.25536 * 20 18 17 25 25 F 1.35101 * 120.06092 * 179.72355 * 24 20 18 26 26 C 1.37908 * 119.87899 * 359.44586 * 24 20 18 27 27 H 0.96994 * 119.99998 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46467 * 60.00562 * 9 7 2 29 29 H 1.08997 * 109.47200 * 300.00903 * 9 7 2 30 30 H 0.97003 * 120.00110 * 0.02562 * 10 9 7 31 31 H 0.97005 * 119.99756 * 5.28433 * 15 13 11 32 32 H 1.08009 * 119.93981 * 0.02562 * 17 16 15 33 33 H 0.96700 * 116.99698 * 180.27819 * 23 21 20 34 34 H 1.08004 * 119.93754 * 180.27348 * 26 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9999 -2.5753 0.0001 11 6 5.3250 -2.8216 0.0001 12 8 6.1136 -1.8992 0.0006 13 6 5.8228 -4.2298 -0.0003 14 8 5.0342 -5.1523 -0.0003 15 7 7.1479 -4.4761 -0.0008 16 6 7.6131 -5.7840 -0.1122 17 6 6.9092 -6.7070 -0.8791 18 6 7.3655 -8.0033 -0.9933 19 9 6.6812 -8.8985 -1.7388 20 6 8.5403 -8.3904 -0.3346 21 6 9.0318 -9.7725 -0.4523 22 8 9.7988 -10.0706 -1.3467 23 8 8.6357 -10.7065 0.4351 24 6 9.2422 -7.4582 0.4413 25 9 10.3724 -7.8262 1.0834 26 6 8.7802 -6.1628 0.5436 27 1 -0.4850 0.8400 0.0004 28 1 3.8751 -0.6797 0.8896 29 1 3.8746 -0.6807 -0.8904 30 1 3.3696 -3.3126 0.0001 31 1 7.7777 -3.7423 0.0766 32 1 6.0040 -6.4075 -1.3867 33 1 8.9884 -11.5994 0.3195 34 1 9.3228 -5.4424 1.1378 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610621381.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:40 Heat of formation + Delta-G solvation = -235.210125 kcal Electronic energy + Delta-G solvation = -26389.278447 eV Core-core repulsion = 21729.922959 eV Total energy + Delta-G solvation = -4659.355488 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.42475 -50.39093 -42.36780 -41.43102 -40.39564 -39.17282 -37.31529 -36.75089 -35.90457 -34.42155 -31.89244 -31.84629 -30.32412 -27.25445 -25.27618 -24.58437 -23.67078 -22.75356 -21.67661 -20.54134 -19.80302 -19.55585 -18.89794 -18.67903 -18.48023 -17.79095 -17.43841 -17.26091 -16.95703 -16.89104 -16.67031 -16.63354 -16.33880 -16.26063 -15.93714 -15.46439 -15.05853 -14.94190 -14.43388 -14.34745 -14.08110 -13.84147 -13.61572 -13.34620 -13.11814 -12.85198 -12.77743 -12.68339 -12.17992 -11.90158 -11.76854 -11.67900 -10.91620 -10.88571 -10.18003 -10.15940 -9.81715 -8.37900 -6.47489 -0.82926 -0.36667 0.21318 0.66923 0.97628 1.38734 1.40842 1.51534 1.65699 1.84930 2.09904 2.24441 2.30646 2.57059 2.91512 2.97525 3.28222 3.42560 3.59249 3.70166 3.86306 4.30669 4.39507 4.45689 4.66951 4.72532 4.75974 4.98561 5.13560 5.24018 5.25818 5.30760 5.65619 6.01500 6.34813 6.49392 6.61822 6.66819 6.87190 7.19072 8.76934 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.029732 B = 0.002297 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.517273 B =12189.261599 C =12822.735552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.024 3.976 3 Si 0.943 3.057 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.248 1.248 7 C -0.554 4.554 8 H 0.054 0.946 9 C 0.229 3.771 10 N -0.670 5.670 11 C 0.501 3.499 12 O -0.545 6.545 13 C 0.526 3.474 14 O -0.503 6.503 15 N -0.628 5.628 16 C 0.233 3.767 17 C -0.173 4.173 18 C 0.188 3.812 19 F -0.123 7.123 20 C -0.213 4.213 21 C 0.546 3.454 22 O -0.520 6.520 23 O -0.496 6.496 24 C 0.195 3.805 25 F -0.115 7.115 26 C -0.162 4.162 27 H 0.273 0.727 28 H 0.033 0.967 29 H 0.031 0.969 30 H 0.415 0.585 31 H 0.444 0.556 32 H 0.158 0.842 33 H 0.438 0.562 34 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.288 -15.833 1.782 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.177 4.177 3 Si 0.765 3.235 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.171 1.171 7 C -0.592 4.592 8 H 0.073 0.927 9 C 0.106 3.894 10 N -0.320 5.320 11 C 0.281 3.719 12 O -0.424 6.424 13 C 0.308 3.692 14 O -0.375 6.375 15 N -0.277 5.277 16 C 0.137 3.863 17 C -0.195 4.195 18 C 0.167 3.833 19 F -0.101 7.101 20 C -0.217 4.217 21 C 0.387 3.613 22 O -0.409 6.409 23 O -0.310 6.310 24 C 0.174 3.826 25 F -0.093 7.093 26 C -0.183 4.183 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.251 0.749 31 H 0.287 0.713 32 H 0.175 0.825 33 H 0.301 0.699 34 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 21.107 -15.387 1.586 26.168 hybrid contribution -0.083 -0.240 -0.248 0.355 sum 21.024 -15.627 1.339 26.230 Atomic orbital electron populations 1.69999 1.08039 1.28770 1.50315 1.25684 0.95573 1.03032 0.93364 0.85785 0.79539 0.78567 0.79585 1.18868 1.20379 1.17114 1.21267 0.90055 0.94587 1.53315 0.92739 1.19394 0.93466 0.79165 0.97380 1.45966 1.05967 1.11265 1.68807 1.19869 0.83750 0.88878 0.79389 1.90745 1.55361 1.45806 1.50521 1.20190 0.83050 0.89452 0.76485 1.90826 1.55597 1.45608 1.45513 1.42930 1.07244 1.07714 1.69768 1.17077 0.92688 0.84276 0.92296 1.21071 1.04138 0.91450 1.02791 1.16769 0.88288 0.86978 0.91250 1.91580 1.78214 1.66821 1.73533 1.18982 1.00403 0.92837 1.09500 1.20270 0.76797 0.85800 0.78388 1.90953 1.33861 1.81883 1.34247 1.84653 1.68756 1.24980 1.52585 1.16657 0.83058 0.91740 0.91145 1.91605 1.47108 1.91948 1.78682 1.20984 0.98454 0.95354 1.03472 0.91822 0.94904 0.95114 0.74881 0.71296 0.82451 0.69890 0.78639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.25 13.96 21.45 0.30 -53.95 16 2 C 0.02 1.29 5.47 84.65 0.46 1.75 16 3 Si 0.94 40.77 27.47 68.60 1.88 42.65 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.25 -10.10 6.54 99.48 0.65 -9.45 16 7 C -0.55 -29.06 9.83 25.60 0.25 -28.81 16 8 H 0.05 3.09 7.84 -2.91 -0.02 3.07 16 9 C 0.23 10.02 4.50 85.63 0.39 10.41 16 10 N -0.67 -24.52 5.54 -468.24 -2.59 -27.11 16 11 C 0.50 15.66 7.89 87.24 0.69 16.35 16 12 O -0.55 -18.53 16.48 -3.26 -0.05 -18.59 16 13 C 0.53 12.94 7.61 87.24 0.66 13.61 16 14 O -0.50 -14.19 14.15 -3.30 -0.05 -14.24 16 15 N -0.63 -10.57 5.30 -304.89 -1.62 -12.18 16 16 C 0.23 3.73 6.26 38.39 0.24 3.97 16 17 C -0.17 -3.38 8.60 22.40 0.19 -3.19 16 18 C 0.19 3.81 7.28 22.65 0.16 3.98 16 19 F -0.12 -2.78 16.83 44.97 0.76 -2.02 16 20 C -0.21 -4.11 5.76 -20.01 -0.12 -4.22 16 21 C 0.55 11.02 7.03 70.16 0.49 11.52 16 22 O -0.52 -13.26 17.90 19.73 0.35 -12.90 16 23 O -0.50 -6.99 13.44 -56.98 -0.77 -7.75 16 24 C 0.19 3.03 7.28 22.65 0.16 3.19 16 25 F -0.12 -1.84 16.83 44.97 0.76 -1.08 16 26 C -0.16 -1.90 9.91 22.41 0.22 -1.67 16 27 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 28 H 0.03 1.46 7.20 -2.39 -0.02 1.45 16 29 H 0.03 1.36 7.57 -2.39 -0.02 1.34 16 30 H 0.41 14.65 7.79 -92.71 -0.72 13.93 16 31 H 0.44 5.41 8.29 -92.70 -0.77 4.64 16 32 H 0.16 3.41 6.41 -2.91 -0.02 3.39 16 33 H 0.44 1.73 9.11 -74.06 -0.67 1.05 16 34 H 0.20 0.94 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -69.24 326.66 1.82 -67.43 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -0.97 Total: 12.88 kcal Atomic # 6 Polarization: 23.06 SS G_CDS: 3.81 Total: 26.87 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -3.91 Total: -93.25 kcal Atomic # 8 Polarization: -52.97 SS G_CDS: -0.51 Total: -53.48 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 1.51 Total: -3.10 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 1.88 Total: 42.65 kcal Total: -69.24 1.82 -67.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621381.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.783 kcal (2) G-P(sol) polarization free energy of solvation -69.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds