Wall clock time and date at job start Tue Mar 31 2020 15:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99929 * 2 1 4 4 H 1.48509 * 109.46909 * 240.00097 * 3 2 1 5 5 H 1.48502 * 109.47200 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47466 * 119.99981 * 3 2 1 7 7 C 1.38706 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99964 * 180.02562 * 7 2 1 9 9 O 1.34806 * 119.99879 * 0.02562 * 7 2 1 10 10 C 1.35506 * 117.00114 * 185.11152 * 9 7 2 11 11 C 1.38836 * 120.16095 * 353.96437 * 10 9 7 12 12 C 1.38025 * 120.07654 * 180.02562 * 11 10 9 13 13 C 1.38593 * 120.41589 * 359.97438 * 12 11 10 14 14 C 1.37803 * 120.33568 * 0.02562 * 13 12 11 15 15 C 1.39742 * 119.90903 * 0.02562 * 14 13 12 16 16 C 1.47377 * 120.20504 * 179.97438 * 15 14 13 17 17 O 1.21518 * 120.00148 * 179.97438 * 16 15 14 18 18 O 1.34805 * 119.99756 * 359.97438 * 16 15 14 19 19 C 1.35744 * 116.99993 * 185.36230 * 18 16 15 20 20 C 1.38994 * 119.90933 * 246.64455 * 19 18 16 21 21 C 1.37705 * 120.09128 * 179.76237 * 20 19 18 22 22 C 1.39778 * 119.90523 * 0.53922 * 21 20 19 23 23 C 1.47503 * 120.09135 * 179.69972 * 22 21 20 24 24 O 1.21496 * 119.99933 * 180.02562 * 23 22 21 25 25 O 1.34738 * 120.00028 * 0.02562 * 23 22 21 26 26 C 1.39773 * 119.81278 * 359.71639 * 22 21 20 27 27 C 1.37699 * 119.90805 * 0.02562 * 26 22 21 28 28 H 0.97000 * 119.99901 * 359.97438 * 1 2 3 29 29 H 1.07995 * 119.96633 * 0.03250 * 11 10 9 30 30 H 1.07994 * 119.79563 * 180.02562 * 12 11 10 31 31 H 1.07995 * 119.83530 * 179.72139 * 13 12 11 32 32 H 1.07993 * 120.04977 * 180.02562 * 14 13 12 33 33 H 1.07998 * 119.95367 * 0.02740 * 20 19 18 34 34 H 1.08001 * 120.04960 * 180.25374 * 21 20 19 35 35 H 0.96703 * 116.99826 * 180.02562 * 25 23 22 36 36 H 1.08009 * 120.04108 * 179.97438 * 26 22 21 37 37 H 1.08003 * 119.95342 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0087 -1.2012 0.0005 8 1 3.0887 -1.2012 0.0010 9 8 1.3347 -2.3687 0.0005 10 6 2.0684 -3.5027 0.1086 11 6 3.4553 -3.4409 0.0871 12 6 4.2010 -4.5972 0.1968 13 6 3.5744 -5.8263 0.3296 14 6 2.1990 -5.9074 0.3530 15 6 1.4305 -4.7456 0.2418 16 6 -0.0410 -4.8248 0.2655 17 8 -0.7057 -3.8121 0.1691 18 8 -0.6495 -6.0208 0.3941 19 6 -2.0034 -6.0370 0.2965 20 6 -2.7745 -6.3595 1.4070 21 6 -4.1483 -6.3724 1.3135 22 6 -4.7668 -6.0715 0.0966 23 6 -6.2379 -6.0906 -0.0099 24 8 -6.7737 -5.8292 -1.0685 25 8 -6.9874 -6.3977 1.0668 26 6 -3.9873 -5.7530 -1.0190 27 6 -2.6144 -5.7372 -0.9154 28 1 -0.4850 0.8401 0.0004 29 1 3.9512 -2.4871 -0.0155 30 1 5.2795 -4.5438 0.1800 31 1 4.1670 -6.7255 0.4102 32 1 1.7156 -6.8675 0.4570 33 1 -2.2957 -6.5962 2.3457 34 1 -4.7470 -6.6191 2.1779 35 1 -7.9471 -6.3976 0.9481 36 1 -4.4614 -5.5203 -1.9612 37 1 -2.0114 -5.4907 -1.7769 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610623529.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:11 Heat of formation + Delta-G solvation = -131.457543 kcal Electronic energy + Delta-G solvation = -26355.174881 eV Core-core repulsion = 22222.255221 eV Total energy + Delta-G solvation = -4132.919660 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.087 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.99720 -40.28920 -39.22310 -38.01401 -36.54479 -36.25818 -35.99200 -32.51414 -31.25684 -31.19810 -30.28661 -29.08652 -25.71203 -25.12580 -23.54042 -22.93547 -21.89503 -21.24583 -20.39771 -18.33577 -18.20846 -17.97041 -17.61876 -17.20707 -16.28778 -16.11290 -15.74683 -14.88357 -14.77496 -14.64609 -14.34799 -14.30462 -13.97352 -13.77517 -13.62329 -13.48376 -13.05810 -12.78282 -12.66949 -12.23136 -11.84400 -11.79909 -11.66862 -11.42459 -11.26667 -10.99390 -10.93340 -10.80247 -10.61303 -10.57000 -9.97750 -9.49359 -9.14792 -9.01561 -8.78494 -8.45577 -7.50079 -6.60310 -4.20382 0.46170 1.25598 1.44009 2.20034 2.30428 2.84341 3.03652 3.05870 3.08846 3.11243 3.21570 3.77059 3.81405 4.41587 4.66752 4.75780 4.90251 4.98591 5.01151 5.03791 5.24660 5.36186 5.46446 5.53711 5.72096 5.85823 5.92066 6.00210 6.06639 6.18984 6.23395 6.31140 6.42468 6.50180 6.58886 6.79337 6.93861 7.01702 7.10824 7.17407 7.53972 7.72221 7.77312 8.49915 8.79060 9.45706 10.52750 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.011995 B = 0.003394 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.724353 B = 8248.634485 C =10181.516702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.046 3.954 3 Si 0.944 3.056 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.404 4.404 8 H 0.097 0.903 9 O -0.123 6.123 10 C 0.191 3.809 11 C -0.236 4.236 12 C -0.041 4.041 13 C -0.233 4.233 14 C -0.014 4.014 15 C -0.218 4.218 16 C 0.497 3.503 17 O -0.454 6.454 18 O -0.307 6.307 19 C 0.148 3.852 20 C -0.139 4.139 21 C -0.044 4.044 22 C -0.145 4.145 23 C 0.532 3.468 24 O -0.516 6.516 25 O -0.513 6.513 26 C -0.033 4.033 27 C -0.139 4.139 28 H 0.275 0.725 29 H 0.135 0.865 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.125 0.875 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.413 0.587 36 H 0.143 0.857 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.683 -12.523 2.382 13.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.479 4.479 8 H 0.115 0.885 9 O -0.020 6.020 10 C 0.131 3.869 11 C -0.255 4.255 12 C -0.059 4.059 13 C -0.252 4.252 14 C -0.033 4.033 15 C -0.221 4.221 16 C 0.343 3.657 17 O -0.337 6.337 18 O -0.225 6.225 19 C 0.105 3.895 20 C -0.158 4.158 21 C -0.063 4.063 22 C -0.146 4.146 23 C 0.377 3.623 24 O -0.406 6.406 25 O -0.325 6.325 26 C -0.051 4.051 27 C -0.157 4.157 28 H 0.085 0.915 29 H 0.153 0.847 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.143 0.857 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.272 0.728 36 H 0.161 0.839 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.116 -11.827 2.104 12.698 hybrid contribution -0.131 0.852 -0.118 0.870 sum -4.248 -10.975 1.985 11.934 Atomic orbital electron populations 1.70098 1.06088 1.28306 1.41384 1.25443 0.95857 0.99144 0.95844 0.85745 0.78822 0.79283 0.79421 1.19196 1.20020 1.19186 1.21514 0.92052 0.80780 1.53539 0.88530 1.84120 1.34019 1.11279 1.72622 1.19184 0.90054 0.86829 0.90844 1.21116 0.92894 0.99587 1.11951 1.20998 0.98903 0.92245 0.93796 1.20550 0.94037 0.97323 1.13329 1.20971 0.93659 0.96113 0.92524 1.17845 0.87245 0.92826 1.24216 1.21498 0.89248 0.80033 0.74936 1.91063 1.65421 1.34014 1.43217 1.84610 1.17486 1.36014 1.84344 1.18917 0.82058 0.95435 0.93052 1.21090 0.93273 1.03387 0.98018 1.21251 0.93857 0.94484 0.96678 1.19008 0.88935 1.10526 0.96172 1.20800 0.88298 0.72407 0.80787 1.90893 1.74221 1.45818 1.29681 1.84565 1.24993 1.82527 1.40373 1.21073 0.92505 0.93519 0.98036 1.21355 0.94906 1.01464 0.97993 0.91487 0.84697 0.86804 0.86807 0.85665 0.84103 0.83779 0.72847 0.83922 0.84318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.08 13.67 55.48 0.76 -23.32 16 2 C 0.05 1.23 5.49 -17.51 -0.10 1.13 16 3 Si 0.94 19.67 29.55 -169.99 -5.02 14.65 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.40 -10.89 9.49 30.91 0.29 -10.60 16 8 H 0.10 2.33 5.21 -52.49 -0.27 2.06 16 9 O -0.12 -3.46 7.84 -20.99 -0.16 -3.62 16 10 C 0.19 4.52 6.66 -38.57 -0.26 4.26 16 11 C -0.24 -4.77 9.16 -39.44 -0.36 -5.13 16 12 C -0.04 -0.67 10.03 -39.53 -0.40 -1.07 16 13 C -0.23 -3.65 10.02 -39.61 -0.40 -4.05 16 14 C -0.01 -0.24 9.61 -39.18 -0.38 -0.62 16 15 C -0.22 -4.63 5.89 -104.83 -0.62 -5.25 16 16 C 0.50 10.82 7.65 34.45 0.26 11.08 16 17 O -0.45 -11.83 14.53 -26.60 -0.39 -12.22 16 18 O -0.31 -5.51 9.28 -24.49 -0.23 -5.74 16 19 C 0.15 2.43 5.35 -39.02 -0.21 2.22 16 20 C -0.14 -1.91 9.97 -39.50 -0.39 -2.30 16 21 C -0.04 -0.54 9.61 -39.20 -0.38 -0.92 16 22 C -0.15 -1.95 5.87 -104.97 -0.62 -2.56 16 23 C 0.53 6.69 8.26 34.51 0.29 6.98 16 24 O -0.52 -7.82 17.13 -19.26 -0.33 -8.15 16 25 O -0.51 -4.59 12.67 -40.60 -0.51 -5.11 16 26 C -0.03 -0.47 9.59 -39.20 -0.38 -0.85 16 27 C -0.14 -2.19 9.17 -39.50 -0.36 -2.56 16 28 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.14 2.65 5.64 -52.49 -0.30 2.36 16 30 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.13 1.80 7.61 -52.49 -0.40 1.40 16 33 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 34 H 0.14 1.36 7.60 -52.49 -0.40 0.96 16 35 H 0.41 1.77 9.11 45.56 0.42 2.18 16 36 H 0.14 1.88 7.64 -52.48 -0.40 1.48 16 37 H 0.14 2.16 8.06 -52.48 -0.42 1.74 16 LS Contribution 341.18 15.07 5.14 5.14 Total: -1.00 -34.40 341.18 -6.92 -41.32 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -2.18 Total: 7.30 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -3.99 Total: -10.24 kcal Atomic # 7 Polarization: -24.08 SS G_CDS: 0.76 Total: -23.32 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -1.62 Total: -34.85 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.40 -6.92 -41.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610623529.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.137 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds