Wall clock time and date at job start Tue Mar 31 2020 15:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99929 * 2 1 4 4 H 1.48509 * 109.46909 * 240.00097 * 3 2 1 5 5 H 1.48502 * 109.47200 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47466 * 119.99981 * 3 2 1 7 7 C 1.38706 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99964 * 180.02562 * 7 2 1 9 9 O 1.34806 * 119.99879 * 0.02562 * 7 2 1 10 10 C 1.35506 * 117.00114 * 185.11152 * 9 7 2 11 11 C 1.38836 * 120.16095 * 353.96437 * 10 9 7 12 12 C 1.38025 * 120.07654 * 180.02562 * 11 10 9 13 13 C 1.38593 * 120.41589 * 359.97438 * 12 11 10 14 14 C 1.37803 * 120.33568 * 0.02562 * 13 12 11 15 15 C 1.39742 * 119.90903 * 0.02562 * 14 13 12 16 16 C 1.47377 * 120.20504 * 179.97438 * 15 14 13 17 17 O 1.21518 * 120.00148 * 179.97438 * 16 15 14 18 18 O 1.34805 * 119.99756 * 359.97438 * 16 15 14 19 19 C 1.35744 * 116.99993 * 185.36230 * 18 16 15 20 20 C 1.38994 * 119.90933 * 246.64455 * 19 18 16 21 21 C 1.37705 * 120.09128 * 179.76237 * 20 19 18 22 22 C 1.39778 * 119.90523 * 0.53922 * 21 20 19 23 23 C 1.47503 * 120.09135 * 179.69972 * 22 21 20 24 24 O 1.21496 * 119.99933 * 180.02562 * 23 22 21 25 25 O 1.34738 * 120.00028 * 0.02562 * 23 22 21 26 26 C 1.39773 * 119.81278 * 359.71639 * 22 21 20 27 27 C 1.37699 * 119.90805 * 0.02562 * 26 22 21 28 28 H 0.97000 * 119.99901 * 359.97438 * 1 2 3 29 29 H 1.07995 * 119.96633 * 0.03250 * 11 10 9 30 30 H 1.07994 * 119.79563 * 180.02562 * 12 11 10 31 31 H 1.07995 * 119.83530 * 179.72139 * 13 12 11 32 32 H 1.07993 * 120.04977 * 180.02562 * 14 13 12 33 33 H 1.07998 * 119.95367 * 0.02740 * 20 19 18 34 34 H 1.08001 * 120.04960 * 180.25374 * 21 20 19 35 35 H 0.96703 * 116.99826 * 180.02562 * 25 23 22 36 36 H 1.08009 * 120.04108 * 179.97438 * 26 22 21 37 37 H 1.08003 * 119.95342 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0087 -1.2012 0.0005 8 1 3.0887 -1.2012 0.0010 9 8 1.3347 -2.3687 0.0005 10 6 2.0684 -3.5027 0.1086 11 6 3.4553 -3.4409 0.0871 12 6 4.2010 -4.5972 0.1968 13 6 3.5744 -5.8263 0.3296 14 6 2.1990 -5.9074 0.3530 15 6 1.4305 -4.7456 0.2418 16 6 -0.0410 -4.8248 0.2655 17 8 -0.7057 -3.8121 0.1691 18 8 -0.6495 -6.0208 0.3941 19 6 -2.0034 -6.0370 0.2965 20 6 -2.7745 -6.3595 1.4070 21 6 -4.1483 -6.3724 1.3135 22 6 -4.7668 -6.0715 0.0966 23 6 -6.2379 -6.0906 -0.0099 24 8 -6.7737 -5.8292 -1.0685 25 8 -6.9874 -6.3977 1.0668 26 6 -3.9873 -5.7530 -1.0190 27 6 -2.6144 -5.7372 -0.9154 28 1 -0.4850 0.8401 0.0004 29 1 3.9512 -2.4871 -0.0155 30 1 5.2795 -4.5438 0.1800 31 1 4.1670 -6.7255 0.4102 32 1 1.7156 -6.8675 0.4570 33 1 -2.2957 -6.5962 2.3457 34 1 -4.7470 -6.6191 2.1779 35 1 -7.9471 -6.3976 0.9481 36 1 -4.4614 -5.5203 -1.9612 37 1 -2.0114 -5.4907 -1.7769 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610623529.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:11 Heat of formation + Delta-G solvation = -153.191127 kcal Electronic energy + Delta-G solvation = -26356.117320 eV Core-core repulsion = 22222.255221 eV Total energy + Delta-G solvation = -4133.862099 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.087 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.42220 -41.39673 -40.78819 -39.32754 -38.15806 -37.64033 -37.13693 -34.39408 -32.67220 -32.34094 -31.57758 -30.66265 -27.53685 -26.50756 -24.85544 -24.13752 -23.38756 -22.52190 -21.77635 -19.95462 -19.49554 -19.34088 -19.02777 -18.42584 -17.88820 -17.49521 -16.72729 -16.48920 -16.24698 -16.03682 -15.86867 -15.71141 -15.40216 -15.28822 -14.91561 -14.70445 -14.46415 -14.33325 -13.86669 -13.58953 -13.50187 -13.15127 -12.95131 -12.76687 -12.63332 -12.54034 -12.43031 -12.17649 -11.94841 -11.86483 -11.68284 -11.19380 -10.86052 -10.26740 -10.03201 -9.95201 -9.14726 -8.50188 -6.21438 -0.70871 -0.11311 0.13675 0.67306 1.15598 1.33177 1.45543 1.50738 1.60401 1.75546 1.96506 2.13091 2.60156 2.79708 3.11881 3.33129 3.56549 3.60612 3.78489 3.98578 4.04234 4.09174 4.22452 4.27217 4.40800 4.49523 4.64620 4.76745 4.87454 4.93849 5.03440 5.06574 5.07525 5.11073 5.26495 5.43839 5.49408 5.56006 5.64833 5.65789 5.90535 6.09957 6.86081 6.90075 6.90837 7.67804 8.69204 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.011995 B = 0.003394 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.724353 B = 8248.634485 C =10181.516702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.018 4.018 3 Si 1.022 2.978 4 H -0.253 1.253 5 H -0.275 1.275 6 H -0.252 1.252 7 C -0.428 4.428 8 H 0.113 0.887 9 O -0.186 6.186 10 C 0.160 3.840 11 C -0.255 4.255 12 C -0.024 4.024 13 C -0.203 4.203 14 C -0.011 4.011 15 C -0.236 4.236 16 C 0.499 3.501 17 O -0.508 6.508 18 O -0.291 6.291 19 C 0.109 3.891 20 C -0.134 4.134 21 C -0.030 4.030 22 C -0.147 4.147 23 C 0.541 3.459 24 O -0.546 6.546 25 O -0.497 6.497 26 C -0.042 4.042 27 C -0.153 4.153 28 H 0.273 0.727 29 H 0.132 0.868 30 H 0.162 0.838 31 H 0.167 0.833 32 H 0.158 0.842 33 H 0.165 0.835 34 H 0.182 0.818 35 H 0.436 0.564 36 H 0.147 0.853 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.803 -15.454 3.857 16.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.218 4.218 3 Si 0.840 3.160 4 H -0.177 1.177 5 H -0.200 1.200 6 H -0.176 1.176 7 C -0.503 4.503 8 H 0.130 0.870 9 O -0.088 6.088 10 C 0.104 3.896 11 C -0.274 4.274 12 C -0.042 4.042 13 C -0.221 4.221 14 C -0.029 4.029 15 C -0.239 4.239 16 C 0.348 3.652 17 O -0.395 6.395 18 O -0.207 6.207 19 C 0.067 3.933 20 C -0.152 4.152 21 C -0.048 4.048 22 C -0.149 4.149 23 C 0.387 3.613 24 O -0.439 6.439 25 O -0.311 6.311 26 C -0.060 4.060 27 C -0.171 4.171 28 H 0.082 0.918 29 H 0.150 0.850 30 H 0.179 0.821 31 H 0.184 0.816 32 H 0.176 0.824 33 H 0.183 0.817 34 H 0.199 0.801 35 H 0.299 0.701 36 H 0.165 0.835 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.206 -14.860 3.601 15.448 hybrid contribution -0.677 1.221 -0.505 1.485 sum -2.882 -13.639 3.096 14.280 Atomic orbital electron populations 1.70288 1.08412 1.28937 1.46053 1.26768 0.96700 1.03142 0.95185 0.84621 0.77383 0.73720 0.80294 1.17675 1.20003 1.17619 1.22058 0.92951 0.81331 1.53987 0.86969 1.84131 1.35560 1.12393 1.76726 1.19943 0.91871 0.86792 0.90956 1.21304 0.91694 1.01372 1.13075 1.21564 1.01123 0.90973 0.90513 1.21235 0.93548 0.98843 1.08452 1.21420 0.94516 0.95757 0.91204 1.18322 0.87506 0.93682 1.24382 1.21782 0.89739 0.80290 0.73397 1.91046 1.66671 1.36168 1.45609 1.84579 1.18714 1.33767 1.83684 1.19308 0.81472 0.98101 0.94433 1.21404 0.93834 1.02163 0.97847 1.21622 0.93390 0.92614 0.97186 1.19253 0.89886 1.09481 0.96248 1.20546 0.88010 0.71785 0.80940 1.90893 1.74664 1.47273 1.31041 1.84498 1.26858 1.81414 1.38333 1.21152 0.91992 0.93833 0.99037 1.21357 0.95674 1.02239 0.97874 0.91844 0.85011 0.82096 0.81554 0.82399 0.81739 0.80108 0.70119 0.83521 0.85556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.99 13.67 21.62 0.30 -56.69 16 2 C -0.02 -1.02 5.49 84.85 0.47 -0.55 16 3 Si 1.02 42.30 29.55 68.60 2.03 44.33 16 4 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 5 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 6 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 7 C -0.43 -24.65 9.49 67.93 0.64 -24.00 16 8 H 0.11 5.70 5.21 -2.91 -0.02 5.68 16 9 O -0.19 -11.29 7.84 1.08 0.01 -11.28 16 10 C 0.16 7.85 6.66 22.92 0.15 8.00 16 11 C -0.26 -10.15 9.16 22.36 0.20 -9.94 16 12 C -0.02 -0.68 10.03 22.30 0.22 -0.45 16 13 C -0.20 -5.18 10.02 22.25 0.22 -4.96 16 14 C -0.01 -0.34 9.61 22.53 0.22 -0.12 16 15 C -0.24 -10.13 5.89 -20.00 -0.12 -10.25 16 16 C 0.50 22.79 7.65 70.23 0.54 23.32 16 17 O -0.51 -28.64 14.53 26.77 0.39 -28.25 16 18 O -0.29 -10.60 9.28 1.12 0.01 -10.59 16 19 C 0.11 3.65 5.35 22.63 0.12 3.77 16 20 C -0.13 -3.52 9.97 22.32 0.22 -3.30 16 21 C -0.03 -0.68 9.61 22.52 0.22 -0.46 16 22 C -0.15 -3.83 5.87 -20.09 -0.12 -3.95 16 23 C 0.54 12.79 8.26 70.26 0.58 13.37 16 24 O -0.55 -16.23 17.13 19.85 0.34 -15.89 16 25 O -0.50 -7.39 12.67 -56.49 -0.72 -8.11 16 26 C -0.04 -1.24 9.59 22.51 0.22 -1.03 16 27 C -0.15 -5.14 9.17 22.32 0.20 -4.93 16 28 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 29 H 0.13 5.22 5.64 -2.91 -0.02 5.20 16 30 H 0.16 3.17 8.06 -2.91 -0.02 3.14 16 31 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 32 H 0.16 3.85 7.61 -2.91 -0.02 3.83 16 33 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 34 H 0.18 2.68 7.60 -2.91 -0.02 2.66 16 35 H 0.44 2.35 9.11 -74.06 -0.67 1.67 16 36 H 0.15 4.11 7.64 -2.91 -0.02 4.09 16 37 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -85.30 341.18 6.83 -78.47 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.48 Total: 23.49 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 3.99 Total: -15.47 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.30 Total: -56.69 kcal Atomic # 8 Polarization: -74.15 SS G_CDS: 0.03 Total: -74.12 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -85.30 6.83 -78.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610623529.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.722 kcal (2) G-P(sol) polarization free energy of solvation -85.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds