Wall clock time and date at job start Tue Mar 31 2020 15:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99599 * 2 1 4 4 H 1.48507 * 109.47046 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47174 * 299.99628 * 3 2 1 6 6 H 1.48494 * 109.47287 * 59.99889 * 3 2 1 7 7 C 1.37877 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00052 * 183.63889 * 7 2 1 9 9 C 1.50701 * 120.00114 * 3.63824 * 7 2 1 10 10 C 1.53003 * 115.55136 * 324.26797 * 9 7 2 11 11 O 1.45198 * 109.46814 * 304.94900 * 10 9 7 12 12 C 1.34226 * 117.00104 * 175.33510 * 11 10 9 13 13 O 1.20819 * 120.00022 * 4.68217 * 12 11 10 14 14 C 1.50701 * 119.99929 * 184.68453 * 12 11 10 15 15 H 1.08997 * 109.47241 * 305.08464 * 14 12 11 16 16 O 1.42905 * 109.46952 * 185.09086 * 14 12 11 17 17 C 1.50699 * 109.47190 * 65.09095 * 14 12 11 18 18 C 1.38227 * 120.00100 * 92.78353 * 17 14 12 19 19 C 1.38204 * 120.03993 * 179.72404 * 18 17 14 20 20 C 1.38391 * 120.03628 * 0.55097 * 19 18 17 21 21 Cl 1.73595 * 120.00223 * 179.74819 * 20 19 18 22 22 C 1.38298 * 119.99699 * 359.71952 * 20 19 18 23 23 C 1.38445 * 119.99964 * 273.05450 * 17 14 12 24 24 F 1.35104 * 120.01965 * 359.97438 * 23 17 14 25 25 C 1.52998 * 117.49731 * 109.93249 * 9 7 2 26 26 C 1.53001 * 117.49879 * 178.59167 * 9 7 2 27 27 H 0.96997 * 120.00198 * 5.00938 * 1 2 3 28 28 H 1.08997 * 109.46751 * 184.95089 * 10 9 7 29 29 H 1.08995 * 109.47289 * 64.94842 * 10 9 7 30 30 H 0.96700 * 113.99654 * 299.99646 * 16 14 12 31 31 H 1.08001 * 119.97950 * 359.97438 * 18 17 14 32 32 H 1.07994 * 119.98517 * 180.26760 * 19 18 17 33 33 H 1.07998 * 120.01698 * 180.02562 * 22 20 19 34 34 H 1.09004 * 117.50417 * 215.00599 * 25 9 7 35 35 H 1.09001 * 117.50261 * 0.02615 * 25 9 7 36 36 H 1.08992 * 117.49929 * 359.97438 * 26 9 7 37 37 H 1.08993 * 117.49573 * 144.97585 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0830 -1.1949 0.0599 9 6 1.2534 -2.4979 -0.0817 10 6 -0.0893 -2.5333 0.6510 11 8 0.1072 -2.1576 2.0397 12 6 -0.9919 -2.0449 2.8019 13 8 -2.0737 -2.3349 2.3487 14 6 -0.8766 -1.5566 4.2229 15 1 -0.1625 -2.1776 4.7637 16 8 -2.1539 -1.6358 4.8589 17 6 -0.4019 -0.1264 4.2257 18 6 -1.3202 0.9066 4.2478 19 6 -0.8856 2.2185 4.2561 20 6 0.4692 2.4997 4.2309 21 17 1.0139 4.1479 4.2347 22 6 1.3892 1.4674 4.2031 23 6 0.9538 0.1531 4.2005 24 9 1.8516 -0.8562 4.1740 25 6 1.3717 -3.3007 -1.3787 26 6 2.0769 -3.7871 -0.1102 27 1 -0.4850 0.8368 -0.0733 28 1 -0.5033 -3.5404 0.6022 29 1 -0.7791 -1.8335 0.1794 30 1 -2.8402 -1.1065 4.4301 31 1 -2.3778 0.6883 4.2626 32 1 -1.6037 3.0248 4.2777 33 1 2.4465 1.6865 4.1839 34 1 0.4930 -3.8541 -1.7101 35 1 1.9932 -2.8861 -2.1725 36 1 3.1620 -3.6921 -0.0699 37 1 1.6624 -4.6602 0.3934 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645935776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:49 Heat of formation + Delta-G solvation = -128.629141 kcal Electronic energy + Delta-G solvation = -26876.074009 eV Core-core repulsion = 22753.216938 eV Total energy + Delta-G solvation = -4122.857071 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.071 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.70251 -40.17775 -38.94693 -37.27967 -36.58244 -36.09927 -34.95447 -32.21269 -31.56440 -30.74322 -27.73361 -26.06275 -25.28629 -22.96577 -22.33495 -21.30453 -20.46232 -19.20478 -18.20534 -17.47141 -17.09049 -16.75813 -16.51748 -15.67518 -15.52657 -15.31370 -14.97827 -14.61586 -14.27783 -14.10280 -13.77926 -13.38364 -13.19444 -13.08673 -12.84754 -12.30809 -12.04765 -11.75207 -11.62882 -11.53838 -11.26483 -11.11868 -11.04612 -10.87953 -10.74987 -10.52516 -10.38631 -10.00696 -9.55408 -9.40899 -8.99638 -8.94899 -8.80167 -8.54488 -8.26569 -6.04393 -4.15403 0.88684 1.13116 1.97382 2.76455 3.20919 3.28114 3.32104 3.34207 3.51331 4.20798 4.32224 4.34755 4.44866 4.60519 4.88342 4.91690 5.06006 5.34360 5.41751 5.46047 5.56759 5.81537 5.89670 6.01398 6.05947 6.12346 6.18865 6.44079 6.57535 6.61313 6.68077 6.76371 6.93151 7.20754 7.33664 7.40612 7.49962 7.87225 8.28654 8.53455 8.82230 9.46889 10.91489 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011183 B = 0.006665 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.125064 B = 4200.192205 C = 5769.270262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.078 3.922 3 Si 0.881 3.119 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.474 4.474 8 H 0.061 0.939 9 C 0.045 3.955 10 C 0.118 3.882 11 O -0.311 6.311 12 C 0.436 3.564 13 O -0.516 6.516 14 C 0.164 3.836 15 H 0.143 0.857 16 O -0.526 6.526 17 C -0.146 4.146 18 C -0.062 4.062 19 C -0.122 4.122 20 C 0.001 3.999 21 Cl -0.063 7.063 22 C -0.146 4.146 23 C 0.158 3.842 24 F -0.114 7.114 25 C -0.195 4.195 26 C -0.208 4.208 27 H 0.260 0.740 28 H 0.021 0.979 29 H 0.121 0.879 30 H 0.383 0.617 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.147 0.853 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.858 4.078 10.056 11.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.124 4.124 3 Si 0.708 3.292 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.511 4.511 8 H 0.080 0.920 9 C 0.045 3.955 10 C 0.045 3.955 11 O -0.224 6.224 12 C 0.277 3.723 13 O -0.407 6.407 14 C 0.103 3.897 15 H 0.160 0.840 16 O -0.332 6.332 17 C -0.147 4.147 18 C -0.080 4.080 19 C -0.141 4.141 20 C -0.026 4.026 21 Cl -0.034 7.034 22 C -0.165 4.165 23 C 0.138 3.862 24 F -0.092 7.092 25 C -0.233 4.233 26 C -0.245 4.245 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.138 0.862 30 H 0.233 0.767 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.165 0.835 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.888 3.826 10.342 11.187 hybrid contribution 0.394 1.140 -0.807 1.451 sum -1.493 4.966 9.535 10.854 Atomic orbital electron populations 1.69763 1.05791 1.26446 1.50153 1.24859 0.94762 0.98854 0.93954 0.86682 0.80381 0.83903 0.78246 1.19652 1.20930 1.19944 1.20494 0.92598 0.88412 1.49585 0.92038 1.18933 0.92362 0.90658 0.93586 1.22974 0.99579 0.96907 0.76058 1.86457 1.33555 1.77549 1.24865 1.23855 0.83818 0.75441 0.89144 1.90596 1.29233 1.47025 1.73873 1.20057 0.87467 0.92539 0.89659 0.83962 1.86636 1.18802 1.73406 1.54388 1.20168 0.92646 0.96285 1.05624 1.20615 0.99562 0.90943 0.96871 1.20929 0.93637 0.97217 1.02317 1.20579 0.93681 0.85544 1.02746 1.98370 1.90305 1.17998 1.96755 1.20933 1.01199 0.90174 1.04237 1.17023 0.85795 0.84517 0.98844 1.91587 1.66448 1.58216 1.92966 1.22987 1.01619 1.06120 0.92551 1.22944 0.98635 0.99962 1.02985 0.92958 0.96126 0.86182 0.76657 0.84178 0.84163 0.83544 0.91451 0.89793 0.90305 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.35 10.24 55.43 0.57 -22.79 16 2 C 0.08 2.03 5.38 -17.82 -0.10 1.93 16 3 Si 0.88 20.42 29.54 -169.99 -5.02 15.40 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.47 -12.53 8.80 -34.44 -0.30 -12.83 16 8 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 9 C 0.05 1.10 2.19 -155.66 -0.34 0.76 16 10 C 0.12 2.86 4.38 37.16 0.16 3.02 16 11 O -0.31 -7.22 9.85 -39.25 -0.39 -7.61 16 12 C 0.44 9.00 7.25 36.01 0.26 9.26 16 13 O -0.52 -11.57 16.06 -25.46 -0.41 -11.97 16 14 C 0.16 2.66 3.52 -29.03 -0.10 2.56 16 15 H 0.14 2.12 7.73 -51.93 -0.40 1.71 16 16 O -0.53 -7.54 12.69 -55.13 -0.70 -8.24 16 17 C -0.15 -2.32 5.03 -104.55 -0.53 -2.84 16 18 C -0.06 -0.84 9.31 -39.60 -0.37 -1.21 16 19 C -0.12 -1.61 9.83 -39.54 -0.39 -2.00 16 20 C 0.00 0.02 6.32 -39.50 -0.25 -0.23 16 21 Cl -0.06 -0.84 28.96 -51.86 -1.50 -2.35 16 22 C -0.15 -2.32 9.81 -39.48 -0.39 -2.71 16 23 C 0.16 2.69 7.24 -39.42 -0.29 2.40 16 24 F -0.11 -2.06 16.53 2.25 0.04 -2.02 16 25 C -0.19 -4.26 9.96 -26.69 -0.27 -4.53 16 26 C -0.21 -4.47 9.93 -26.69 -0.27 -4.74 16 27 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 28 H 0.02 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.12 3.20 5.82 -51.93 -0.30 2.90 16 30 H 0.38 4.53 7.06 45.56 0.32 4.85 16 31 H 0.14 1.48 6.44 -52.49 -0.34 1.14 16 32 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 34 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 36 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 37 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 344.10 15.07 5.19 5.19 Total: -1.00 -29.27 344.10 -8.61 -37.88 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -3.22 Total: 7.65 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -3.16 Total: -11.14 kcal Atomic # 7 Polarization: -23.35 SS G_CDS: 0.57 Total: -22.79 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -1.49 Total: -27.82 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.27 -8.61 -37.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645935776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.750 kcal (2) G-P(sol) polarization free energy of solvation -29.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds