Wall clock time and date at job start Tue Mar 31 2020 15:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99955 * 2 1 4 4 H 1.48498 * 109.47128 * 185.01556 * 3 2 1 5 5 H 1.48497 * 109.47016 * 305.01629 * 3 2 1 6 6 H 1.48499 * 109.46950 * 65.01455 * 3 2 1 7 7 C 1.37873 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00014 * 170.62177 * 7 2 1 9 9 C 1.50696 * 119.99933 * 350.61730 * 7 2 1 10 10 C 1.53002 * 115.55240 * 324.51664 * 9 7 2 11 11 O 1.45195 * 109.46993 * 305.77042 * 10 9 7 12 12 C 1.34230 * 117.00288 * 175.97205 * 11 10 9 13 13 O 1.20831 * 119.99657 * 4.75755 * 12 11 10 14 14 C 1.50697 * 120.00296 * 184.75665 * 12 11 10 15 15 H 1.08999 * 109.47171 * 51.16236 * 14 12 11 16 16 O 1.42900 * 109.47225 * 171.15628 * 14 12 11 17 17 C 1.50698 * 109.47392 * 291.16011 * 14 12 11 18 18 C 1.38227 * 119.99768 * 266.15708 * 17 14 12 19 19 C 1.38202 * 120.03385 * 180.02562 * 18 17 14 20 20 C 1.38379 * 120.04038 * 359.96952 * 19 18 17 21 21 Cl 1.73602 * 120.00129 * 179.97438 * 20 19 18 22 22 C 1.38290 * 120.00054 * 0.02562 * 20 19 18 23 23 C 1.38442 * 119.99941 * 85.87806 * 17 14 12 24 24 F 1.35097 * 120.01972 * 0.02562 * 23 17 14 25 25 C 1.53001 * 117.49850 * 110.18703 * 9 7 2 26 26 C 1.53006 * 117.49774 * 178.84581 * 9 7 2 27 27 H 0.96994 * 119.99814 * 5.01726 * 1 2 3 28 28 H 1.09000 * 109.46740 * 185.77356 * 10 9 7 29 29 H 1.08994 * 109.46736 * 65.77259 * 10 9 7 30 30 H 0.96706 * 113.99578 * 60.00194 * 16 14 12 31 31 H 1.07997 * 119.98393 * 359.97438 * 18 17 14 32 32 H 1.08011 * 119.97588 * 180.02562 * 19 18 17 33 33 H 1.08003 * 120.01975 * 179.97438 * 22 20 19 34 34 H 1.08998 * 117.50377 * 215.00489 * 25 9 7 35 35 H 1.08999 * 117.49938 * 0.02562 * 25 9 7 36 36 H 1.08993 * 117.50071 * 359.97376 * 26 9 7 37 37 H 1.08994 * 117.49733 * 144.98001 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7046 1.3491 -0.1224 5 1 1.8010 2.4481 -1.1466 6 1 1.9845 2.3421 1.2691 7 6 2.0046 -1.1940 -0.0005 8 1 3.0738 -1.2002 -0.1529 9 6 1.2662 -2.4904 0.2117 10 6 0.0891 -2.4275 1.1870 11 8 0.5393 -1.8800 2.4542 12 6 -0.3943 -1.6797 3.3977 13 8 -1.5338 -2.0320 3.2043 14 6 -0.0212 -1.0156 4.6979 15 1 0.5111 -0.0870 4.4920 16 8 -1.2060 -0.7299 5.4440 17 6 0.8653 -1.9364 5.4961 18 6 0.3126 -2.7807 6.4407 19 6 1.1250 -3.6251 7.1735 20 6 2.4926 -3.6267 6.9621 21 17 3.5122 -4.6873 7.8837 22 6 3.0472 -2.7826 6.0174 23 6 2.2327 -1.9407 5.2793 24 9 2.7726 -1.1192 4.3526 25 6 1.1431 -3.4372 -0.9839 26 6 2.0835 -3.7834 0.1732 27 1 -0.4849 0.8368 -0.0735 28 1 -0.3061 -3.4310 1.3447 29 1 -0.6922 -1.7902 0.7729 30 1 -1.7308 -1.5120 5.6634 31 1 -0.7545 -2.7801 6.6067 32 1 0.6921 -4.2848 7.9111 33 1 4.1145 -2.7833 5.8524 34 1 0.2235 -4.0151 -1.0758 35 1 1.5965 -3.1225 -1.9239 36 1 3.1550 -3.6963 -0.0059 37 1 1.7827 -4.5889 0.8430 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645935777.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:51 Heat of formation + Delta-G solvation = -145.917376 kcal Electronic energy + Delta-G solvation = -26234.836596 eV Core-core repulsion = 22111.229851 eV Total energy + Delta-G solvation = -4123.606746 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.03177 -41.75057 -40.31811 -38.84567 -37.98945 -37.36355 -36.71821 -34.19964 -32.79301 -31.88461 -29.28110 -27.86049 -27.15870 -24.10713 -23.64610 -23.02304 -21.99944 -21.13586 -19.47031 -19.02403 -18.71587 -18.08250 -18.03060 -17.37019 -17.10634 -16.71129 -16.49576 -16.23781 -15.62740 -15.50448 -15.30495 -14.98232 -14.55571 -14.32221 -14.14896 -13.87107 -13.70336 -13.54924 -13.10847 -12.90106 -12.78026 -12.74760 -12.56976 -12.33955 -12.16133 -12.11827 -12.06920 -11.69511 -11.39456 -11.18142 -11.05250 -10.69478 -10.13498 -10.08969 -9.77216 -8.08536 -6.19299 -0.32251 -0.03718 0.89312 1.08356 1.37878 1.42756 1.52066 1.71674 2.26016 2.40375 2.97509 3.00707 3.12102 3.17868 3.50146 3.53407 3.75256 3.80700 3.93267 4.18158 4.22465 4.34066 4.36627 4.55540 4.67466 4.72696 4.81721 4.88910 4.94470 4.94709 5.01372 5.15597 5.39333 5.49401 5.50851 5.69171 5.81592 6.27705 6.32126 6.71861 6.83345 7.43320 8.90704 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013185 B = 0.004305 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.092672 B = 6502.957563 C = 6796.185043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.035 3.965 3 Si 0.944 3.056 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.492 4.492 8 H 0.054 0.946 9 C 0.009 3.991 10 C 0.123 3.877 11 O -0.328 6.328 12 C 0.429 3.571 13 O -0.536 6.536 14 C 0.176 3.824 15 H 0.138 0.862 16 O -0.521 6.521 17 C -0.166 4.166 18 C -0.059 4.059 19 C -0.109 4.109 20 C -0.002 4.002 21 Cl -0.044 7.044 22 C -0.150 4.150 23 C 0.122 3.878 24 F -0.133 7.133 25 C -0.184 4.184 26 C -0.186 4.186 27 H 0.260 0.740 28 H 0.034 0.966 29 H 0.085 0.915 30 H 0.397 0.603 31 H 0.173 0.827 32 H 0.177 0.823 33 H 0.159 0.841 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.625 -7.613 17.271 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.165 4.165 3 Si 0.770 3.230 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.529 4.529 8 H 0.073 0.927 9 C 0.009 3.991 10 C 0.050 3.950 11 O -0.242 6.242 12 C 0.272 3.728 13 O -0.428 6.428 14 C 0.114 3.886 15 H 0.155 0.845 16 O -0.330 6.330 17 C -0.167 4.167 18 C -0.077 4.077 19 C -0.127 4.127 20 C -0.029 4.029 21 Cl -0.015 7.015 22 C -0.170 4.170 23 C 0.102 3.898 24 F -0.112 7.112 25 C -0.222 4.222 26 C -0.223 4.223 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.103 0.897 30 H 0.249 0.751 31 H 0.190 0.810 32 H 0.194 0.806 33 H 0.177 0.823 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.493 -7.075 17.224 18.787 hybrid contribution 0.268 0.500 -0.761 0.949 sum 2.761 -6.575 16.463 17.941 Atomic orbital electron populations 1.69913 1.07017 1.27134 1.50661 1.25519 0.95393 1.01720 0.93902 0.85710 0.79409 0.80192 0.77663 1.19086 1.20602 1.20631 1.20663 0.93434 0.90055 1.48762 0.92744 1.19018 0.95137 0.90367 0.94619 1.22599 0.98491 0.94760 0.79164 1.86498 1.39462 1.74002 1.24223 1.24861 0.84002 0.76283 0.87665 1.90575 1.22088 1.49177 1.80928 1.19921 0.86614 0.98200 0.83828 0.84511 1.86682 1.35681 1.38257 1.72349 1.20270 0.92518 1.02185 1.01748 1.21078 1.02191 0.92003 0.92431 1.21389 0.90506 0.99861 1.00980 1.20789 0.92403 0.94527 0.95225 1.98399 1.67879 1.63492 1.71758 1.21107 1.01938 0.96844 0.97091 1.17503 0.90965 0.92043 0.89294 1.91598 1.86259 1.69905 1.63393 1.22970 1.00451 1.04965 0.93835 1.22960 0.97228 1.00018 1.02139 0.93048 0.94784 0.89705 0.75061 0.81018 0.80557 0.82289 0.90006 0.89925 0.89784 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.32 10.71 21.45 0.23 -51.09 16 2 C 0.03 1.88 5.23 84.65 0.44 2.32 16 3 Si 0.94 43.57 29.55 68.60 2.03 45.60 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.49 -26.74 8.78 25.60 0.22 -26.52 16 8 H 0.05 2.96 7.83 -2.91 -0.02 2.94 16 9 C 0.01 0.45 2.12 -52.93 -0.11 0.33 16 10 C 0.12 6.11 4.53 71.98 0.33 6.44 16 11 O -0.33 -15.52 9.90 -51.42 -0.51 -16.02 16 12 C 0.43 17.80 7.24 71.23 0.52 18.31 16 13 O -0.54 -23.93 16.05 28.34 0.45 -23.48 16 14 C 0.18 5.65 3.51 29.10 0.10 5.76 16 15 H 0.14 4.65 7.76 -2.39 -0.02 4.63 16 16 O -0.52 -14.36 12.70 -130.05 -1.65 -16.01 16 17 C -0.17 -4.41 5.05 -19.82 -0.10 -4.51 16 18 C -0.06 -1.10 9.30 22.26 0.21 -0.89 16 19 C -0.11 -1.71 9.83 22.29 0.22 -1.50 16 20 C 0.00 -0.05 6.32 22.32 0.14 0.09 16 21 Cl -0.04 -0.72 28.96 -2.72 -0.08 -0.80 16 22 C -0.15 -3.45 9.81 22.33 0.22 -3.23 16 23 C 0.12 3.49 7.24 22.37 0.16 3.65 16 24 F -0.13 -4.70 16.55 44.97 0.74 -3.96 16 25 C -0.18 -8.02 9.96 30.62 0.30 -7.72 16 26 C -0.19 -7.79 9.92 30.62 0.30 -7.48 16 27 H 0.26 14.20 8.32 -92.71 -0.77 13.43 16 28 H 0.03 1.57 8.09 -2.39 -0.02 1.56 16 29 H 0.09 4.75 5.95 -2.39 -0.01 4.73 16 30 H 0.40 7.93 7.02 -74.05 -0.52 7.41 16 31 H 0.17 2.10 6.42 -2.91 -0.02 2.08 16 32 H 0.18 1.60 8.06 -2.90 -0.02 1.58 16 33 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 34 H 0.08 3.27 8.14 -2.39 -0.02 3.26 16 35 H 0.08 3.58 8.14 -2.39 -0.02 3.56 16 36 H 0.08 3.40 8.14 -2.39 -0.02 3.39 16 37 H 0.09 3.27 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -65.79 344.67 4.78 -61.00 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.61 Total: 19.70 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 2.96 Total: -14.94 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.23 Total: -51.09 kcal Atomic # 8 Polarization: -53.80 SS G_CDS: -1.71 Total: -55.51 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.74 Total: -3.96 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.80 kcal Total: -65.79 4.78 -61.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645935777.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.914 kcal (2) G-P(sol) polarization free energy of solvation -65.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds