Wall clock time and date at job start Tue Mar 31 2020 14:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86806 * 119.99789 * 2 1 4 4 H 1.48497 * 109.47095 * 239.99867 * 3 2 1 5 5 H 1.48499 * 109.47120 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46714 * 120.00323 * 3 2 1 7 7 C 1.38813 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00155 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99745 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99969 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46914 * 179.97438 * 10 9 7 12 12 C 1.30998 * 119.99638 * 125.00119 * 11 10 9 13 13 C 1.50707 * 119.99732 * 179.97438 * 12 11 10 14 14 N 1.46503 * 109.46750 * 124.99832 * 13 12 11 15 15 C 1.34780 * 120.00029 * 180.02562 * 14 13 12 16 16 O 1.21559 * 119.99811 * 0.02562 * 15 14 13 17 17 C 1.47765 * 120.00060 * 180.02562 * 15 14 13 18 18 C 1.39617 * 120.15005 * 359.72041 * 17 15 14 19 19 C 1.38011 * 119.85139 * 180.30051 * 18 17 15 20 20 Cl 1.73609 * 119.92117 * 179.97438 * 19 18 17 21 21 C 1.38527 * 120.15853 * 359.95598 * 19 18 17 22 22 C 1.38255 * 120.30371 * 0.04196 * 21 19 18 23 23 C 1.38154 * 120.14262 * 359.97438 * 22 21 19 24 24 Cl 1.73597 * 120.07855 * 179.97438 * 23 22 21 25 25 H 0.96998 * 119.99566 * 359.97438 * 1 2 3 26 26 H 0.97007 * 120.00355 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.46996 * 60.00022 * 10 9 7 28 28 H 1.08992 * 109.47029 * 299.99216 * 10 9 7 29 29 H 1.08001 * 119.99769 * 304.99542 * 11 10 9 30 30 H 1.07995 * 120.00521 * 359.97438 * 12 11 10 31 31 H 1.09001 * 109.46790 * 5.00643 * 13 12 11 32 32 H 1.08999 * 109.47275 * 244.99867 * 13 12 11 33 33 H 0.97003 * 120.00140 * 0.02562 * 14 13 12 34 34 H 1.08004 * 120.07496 * 0.25529 * 18 17 15 35 35 H 1.07998 * 119.85060 * 180.02562 * 21 19 18 36 36 H 1.07994 * 119.92658 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0027 11 6 1.0789 -4.8022 -0.0031 12 6 1.1475 -5.7222 -0.9331 13 6 0.1685 -6.8680 -0.9332 14 7 -0.5087 -6.9315 -2.2307 15 6 -1.4341 -7.8837 -2.4620 16 8 -1.7071 -8.6896 -1.5939 17 6 -2.1168 -7.9481 -3.7710 18 6 -1.8099 -7.0205 -4.7683 19 6 -2.4557 -7.0825 -5.9864 20 17 -2.0760 -5.9296 -7.2276 21 6 -3.4060 -8.0627 -6.2211 22 6 -3.7149 -8.9845 -5.2382 23 6 -3.0763 -8.9338 -4.0141 24 17 -3.4659 -10.0917 -2.7809 25 1 -0.4849 0.8401 0.0004 26 1 0.3557 -2.3881 -0.0016 27 1 2.6849 -3.7152 0.8872 28 1 2.6847 -3.7137 -0.8928 29 1 0.3206 -4.8645 0.7634 30 1 1.9056 -5.6597 -1.6997 31 1 -0.5692 -6.7155 -0.1454 32 1 0.7021 -7.8018 -0.7557 33 1 -0.2911 -6.2882 -2.9234 34 1 -1.0692 -6.2557 -4.5867 35 1 -3.9081 -8.1069 -7.1763 36 1 -4.4570 -9.7459 -5.4276 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699334524.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:39 Heat of formation + Delta-G solvation = 12.622598 kcal Electronic energy + Delta-G solvation = -21437.444924 eV Core-core repulsion = 17781.342114 eV Total energy + Delta-G solvation = -3656.102810 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.59642 -38.86918 -37.11605 -36.51206 -36.29786 -34.79023 -33.07673 -31.92949 -30.95786 -30.48585 -27.32940 -24.85531 -23.87344 -23.02513 -21.91396 -20.90487 -19.68030 -18.52073 -17.15236 -16.90464 -16.61863 -15.85444 -15.55054 -15.45919 -14.84493 -14.71984 -14.31965 -14.10660 -13.68405 -13.53624 -13.26916 -12.89657 -12.72631 -12.64447 -12.44686 -12.04483 -11.88507 -11.57930 -11.34143 -11.30966 -11.05816 -10.82594 -10.65753 -10.13174 -9.87323 -9.80902 -9.75001 -9.33297 -9.09702 -8.99928 -8.75230 -6.97667 -5.80125 -3.09968 0.13840 0.46141 1.53431 1.81166 2.20530 2.40232 3.13750 3.22172 3.42078 3.46429 3.47647 4.05732 4.13643 4.51005 4.57232 4.59015 4.77504 4.90629 5.10855 5.18320 5.21941 5.46159 5.50637 5.52517 5.58413 5.76083 5.88050 5.95716 6.10086 6.21737 6.43656 6.53775 6.85708 7.10364 7.30448 7.65499 7.98785 8.38109 9.49384 10.05308 10.40563 11.42449 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.002490 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.164358 B =11244.462860 C =12917.114147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.172 3.828 11 C -0.103 4.103 12 C -0.205 4.205 13 C 0.157 3.843 14 N -0.717 5.717 15 C 0.552 3.448 16 O -0.514 6.514 17 C -0.114 4.114 18 C -0.065 4.065 19 C -0.041 4.041 20 Cl -0.052 7.052 21 C -0.075 4.075 22 C -0.109 4.109 23 C 0.015 3.985 24 Cl -0.021 7.021 25 H 0.256 0.744 26 H 0.385 0.615 27 H 0.031 0.969 28 H 0.026 0.974 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.402 0.598 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.202 -21.132 -14.235 26.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.045 3.955 11 C -0.123 4.123 12 C -0.224 4.224 13 C 0.035 3.965 14 N -0.369 5.369 15 C 0.338 3.662 16 O -0.390 6.390 17 C -0.118 4.118 18 C -0.085 4.085 19 C -0.068 4.068 20 Cl -0.022 7.022 21 C -0.094 4.094 22 C -0.127 4.127 23 C -0.013 4.013 24 Cl 0.009 6.991 25 H 0.066 0.934 26 H 0.219 0.781 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.237 0.763 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.251 -21.582 -13.563 26.501 hybrid contribution 0.274 1.384 -0.412 1.470 sum -6.977 -20.198 -13.975 25.533 Atomic orbital electron populations 1.69657 1.05139 1.25887 1.57384 1.24767 0.95555 0.97757 1.02792 0.86240 0.78515 0.83361 0.77893 1.21205 1.21623 1.21187 1.19193 0.91042 0.84014 1.43227 0.91123 1.42288 1.05941 0.99540 1.89629 1.19831 0.92613 0.84577 0.98477 1.23357 0.98144 0.93859 0.96917 1.22683 1.01078 0.97073 1.01568 1.20357 0.93894 0.97838 0.84414 1.45986 1.40710 1.32700 1.17476 1.17925 0.79969 0.81714 0.86637 1.90883 1.63244 1.39530 1.45316 1.19777 0.99455 0.97075 0.95508 1.21255 0.98724 0.97765 0.90757 1.20880 0.99768 0.94836 0.91359 1.98419 1.93491 1.58155 1.52180 1.21231 0.95565 0.92555 1.00077 1.21057 1.00557 1.00133 0.90997 1.21132 0.95981 0.92643 0.91584 1.98439 1.92348 1.55996 1.52358 0.93374 0.78124 0.95107 0.95649 0.87202 0.86691 0.90881 0.90770 0.76278 0.83436 0.83452 0.83247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.41 5.59 -61.09 -0.34 -18.75 16 10 C 0.17 3.38 6.70 -5.19 -0.03 3.34 16 11 C -0.10 -1.63 9.24 -36.02 -0.33 -1.96 16 12 C -0.20 -2.66 9.24 -36.02 -0.33 -3.00 16 13 C 0.16 1.90 6.11 -5.19 -0.03 1.87 16 14 N -0.72 -8.09 5.50 -62.45 -0.34 -8.44 16 15 C 0.55 6.92 7.76 -12.36 -0.10 6.83 16 16 O -0.51 -7.83 13.97 5.31 0.07 -7.75 16 17 C -0.11 -1.19 5.88 -104.94 -0.62 -1.81 16 18 C -0.07 -0.57 9.32 -39.15 -0.36 -0.94 16 19 C -0.04 -0.33 6.31 -39.56 -0.25 -0.58 16 20 Cl -0.05 -0.42 28.95 -51.86 -1.50 -1.92 16 21 C -0.08 -0.49 9.82 -39.47 -0.39 -0.88 16 22 C -0.11 -0.77 9.82 -39.61 -0.39 -1.16 16 23 C 0.01 0.15 6.35 -39.07 -0.25 -0.10 16 24 Cl -0.02 -0.23 26.02 -51.86 -1.35 -1.58 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.39 10.23 7.66 -40.82 -0.31 9.91 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.50 7.79 -51.93 -0.40 0.09 16 29 H 0.11 1.70 7.84 -52.49 -0.41 1.29 16 30 H 0.12 1.40 7.84 -52.49 -0.41 0.99 16 31 H 0.07 0.95 7.79 -51.93 -0.40 0.55 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.40 3.82 6.50 -40.82 -0.27 3.55 16 34 H 0.15 1.10 6.41 -52.48 -0.34 0.77 16 35 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 346.37 15.07 5.22 5.22 Total: -1.00 -32.32 346.37 -9.65 -41.97 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -3.78 Total: 7.22 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -3.33 Total: -5.79 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.04 Total: -54.57 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.07 Total: -7.75 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -2.85 Total: -3.50 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.32 -9.65 -41.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699334524.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.593 kcal (2) G-P(sol) polarization free energy of solvation -32.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds