Wall clock time and date at job start Tue Mar 31 2020 14:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86806 * 119.99789 * 2 1 4 4 H 1.48497 * 109.47095 * 239.99867 * 3 2 1 5 5 H 1.48499 * 109.47120 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46714 * 120.00323 * 3 2 1 7 7 C 1.38813 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00155 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99745 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99969 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46914 * 179.97438 * 10 9 7 12 12 C 1.30998 * 119.99638 * 125.00119 * 11 10 9 13 13 C 1.50707 * 119.99732 * 179.97438 * 12 11 10 14 14 N 1.46503 * 109.46750 * 124.99832 * 13 12 11 15 15 C 1.34780 * 120.00029 * 180.02562 * 14 13 12 16 16 O 1.21559 * 119.99811 * 0.02562 * 15 14 13 17 17 C 1.47765 * 120.00060 * 180.02562 * 15 14 13 18 18 C 1.39617 * 120.15005 * 359.72041 * 17 15 14 19 19 C 1.38011 * 119.85139 * 180.30051 * 18 17 15 20 20 Cl 1.73609 * 119.92117 * 179.97438 * 19 18 17 21 21 C 1.38527 * 120.15853 * 359.95598 * 19 18 17 22 22 C 1.38255 * 120.30371 * 0.04196 * 21 19 18 23 23 C 1.38154 * 120.14262 * 359.97438 * 22 21 19 24 24 Cl 1.73597 * 120.07855 * 179.97438 * 23 22 21 25 25 H 0.96998 * 119.99566 * 359.97438 * 1 2 3 26 26 H 0.97007 * 120.00355 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.46996 * 60.00022 * 10 9 7 28 28 H 1.08992 * 109.47029 * 299.99216 * 10 9 7 29 29 H 1.08001 * 119.99769 * 304.99542 * 11 10 9 30 30 H 1.07995 * 120.00521 * 359.97438 * 12 11 10 31 31 H 1.09001 * 109.46790 * 5.00643 * 13 12 11 32 32 H 1.08999 * 109.47275 * 244.99867 * 13 12 11 33 33 H 0.97003 * 120.00140 * 0.02562 * 14 13 12 34 34 H 1.08004 * 120.07496 * 0.25529 * 18 17 15 35 35 H 1.07998 * 119.85060 * 180.02562 * 21 19 18 36 36 H 1.07994 * 119.92658 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0027 11 6 1.0789 -4.8022 -0.0031 12 6 1.1475 -5.7222 -0.9331 13 6 0.1685 -6.8680 -0.9332 14 7 -0.5087 -6.9315 -2.2307 15 6 -1.4341 -7.8837 -2.4620 16 8 -1.7071 -8.6896 -1.5939 17 6 -2.1168 -7.9481 -3.7710 18 6 -1.8099 -7.0205 -4.7683 19 6 -2.4557 -7.0825 -5.9864 20 17 -2.0760 -5.9296 -7.2276 21 6 -3.4060 -8.0627 -6.2211 22 6 -3.7149 -8.9845 -5.2382 23 6 -3.0763 -8.9338 -4.0141 24 17 -3.4659 -10.0917 -2.7809 25 1 -0.4849 0.8401 0.0004 26 1 0.3557 -2.3881 -0.0016 27 1 2.6849 -3.7152 0.8872 28 1 2.6847 -3.7137 -0.8928 29 1 0.3206 -4.8645 0.7634 30 1 1.9056 -5.6597 -1.6997 31 1 -0.5692 -6.7155 -0.1454 32 1 0.7021 -7.8018 -0.7557 33 1 -0.2911 -6.2882 -2.9234 34 1 -1.0692 -6.2557 -4.5867 35 1 -3.9081 -8.1069 -7.1763 36 1 -4.4570 -9.7459 -5.4276 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699334524.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:38 Heat of formation + Delta-G solvation = -7.300040 kcal Electronic energy + Delta-G solvation = -21438.308834 eV Core-core repulsion = 17781.342114 eV Total energy + Delta-G solvation = -3656.966720 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.41472 -39.67546 -37.85293 -37.60361 -37.21764 -36.24971 -34.52091 -32.98047 -32.04926 -31.61427 -28.72382 -26.22964 -24.97442 -23.93407 -23.32770 -21.82515 -20.85929 -19.44452 -19.05056 -17.68645 -17.40331 -16.80057 -16.51091 -16.50149 -16.30926 -15.67519 -15.45223 -15.23564 -15.13821 -14.80076 -14.55081 -14.16559 -13.52443 -13.46079 -13.35247 -13.27614 -13.06374 -12.88015 -12.70477 -12.36519 -12.23901 -12.03702 -12.01483 -11.97371 -11.78457 -11.03926 -10.79939 -10.46205 -10.31603 -9.99365 -9.74058 -9.01445 -7.95929 -5.25891 -0.55805 -0.16928 0.87963 1.01759 1.12788 1.48309 1.51282 1.57584 1.62093 2.20479 2.44835 2.57188 3.37743 3.40484 3.46740 3.73387 3.88647 3.94154 4.09297 4.15807 4.23849 4.46914 4.50788 4.54532 4.67748 4.71820 4.85346 4.92586 4.95339 5.00980 5.25018 5.30918 5.47422 5.65415 5.83211 6.26003 6.39148 7.05966 7.32189 8.06389 8.30241 9.27301 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.002490 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.164358 B =11244.462860 C =12917.114147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.976 3.024 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.278 1.278 7 C -0.250 4.250 8 H 0.078 0.922 9 N -0.744 5.744 10 C 0.173 3.827 11 C -0.130 4.130 12 C -0.163 4.163 13 C 0.160 3.840 14 N -0.711 5.711 15 C 0.550 3.450 16 O -0.546 6.546 17 C -0.132 4.132 18 C -0.066 4.066 19 C -0.047 4.047 20 Cl -0.052 7.052 21 C -0.061 4.061 22 C -0.100 4.100 23 C 0.001 3.999 24 Cl -0.040 7.040 25 H 0.252 0.748 26 H 0.374 0.626 27 H 0.030 0.970 28 H 0.034 0.966 29 H 0.108 0.892 30 H 0.131 0.869 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.411 0.589 34 H 0.156 0.844 35 H 0.178 0.822 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.840 -21.633 -16.094 27.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.096 0.904 9 N -0.387 5.387 10 C 0.047 3.953 11 C -0.149 4.149 12 C -0.182 4.182 13 C 0.037 3.963 14 N -0.364 5.364 15 C 0.337 3.663 16 O -0.425 6.425 17 C -0.136 4.136 18 C -0.086 4.086 19 C -0.074 4.074 20 Cl -0.023 7.023 21 C -0.080 4.080 22 C -0.119 4.119 23 C -0.027 4.027 24 Cl -0.010 7.010 25 H 0.061 0.939 26 H 0.206 0.794 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.126 0.874 30 H 0.149 0.851 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.248 0.752 34 H 0.174 0.826 35 H 0.196 0.804 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -6.842 -22.101 -15.438 27.814 hybrid contribution 0.175 1.432 0.070 1.445 sum -6.668 -20.669 -15.368 26.605 Atomic orbital electron populations 1.69819 1.06676 1.26260 1.59222 1.25613 0.96427 1.01229 1.03464 0.85183 0.77193 0.78912 0.78297 1.20139 1.22151 1.20359 1.19633 0.91619 0.85226 1.41688 0.90405 1.42527 1.05702 1.00926 1.89570 1.19914 0.93165 0.83677 0.98507 1.23016 0.98754 0.94165 0.99000 1.22772 1.00104 0.95488 0.99856 1.20270 0.93592 0.97708 0.84710 1.45890 1.40409 1.32755 1.17311 1.18263 0.79736 0.81183 0.87158 1.90862 1.64318 1.40791 1.46532 1.19645 1.00490 0.98486 0.94980 1.21320 0.98972 0.97516 0.90754 1.21008 1.00103 0.95237 0.91072 1.98424 1.93548 1.58268 1.52012 1.21591 0.94370 0.91087 1.00944 1.21356 1.00263 1.00539 0.89715 1.21367 0.96677 0.92486 0.92213 1.98430 1.92477 1.56672 1.53444 0.93929 0.79394 0.95224 0.94833 0.87421 0.85104 0.91866 0.89783 0.75183 0.82617 0.80436 0.80599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.26 13.06 21.65 0.28 -58.98 16 2 C -0.07 -4.29 5.50 84.86 0.47 -3.83 16 3 Si 0.98 45.69 29.55 68.60 2.03 47.71 16 4 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 9 N -0.74 -37.78 5.59 -347.18 -1.94 -39.72 16 10 C 0.17 6.72 6.70 85.63 0.57 7.29 16 11 C -0.13 -4.02 9.24 25.65 0.24 -3.78 16 12 C -0.16 -3.98 9.24 25.65 0.24 -3.75 16 13 C 0.16 3.69 6.11 85.63 0.52 4.21 16 14 N -0.71 -15.38 5.50 -469.76 -2.58 -17.97 16 15 C 0.55 13.59 7.76 86.76 0.67 14.26 16 16 O -0.55 -16.77 13.97 -3.90 -0.05 -16.83 16 17 C -0.13 -2.66 5.88 -20.07 -0.12 -2.77 16 18 C -0.07 -1.07 9.32 22.55 0.21 -0.86 16 19 C -0.05 -0.66 6.31 22.28 0.14 -0.52 16 20 Cl -0.05 -0.74 28.95 -2.72 -0.08 -0.82 16 21 C -0.06 -0.62 9.82 22.34 0.22 -0.40 16 22 C -0.10 -1.17 9.82 22.25 0.22 -0.96 16 23 C 0.00 0.01 6.35 22.60 0.14 0.16 16 24 Cl -0.04 -0.87 26.02 -2.72 -0.07 -0.95 16 25 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 26 H 0.37 20.27 7.66 -92.70 -0.71 19.56 16 27 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.03 1.26 7.79 -2.39 -0.02 1.24 16 29 H 0.11 3.38 7.84 -2.91 -0.02 3.35 16 30 H 0.13 2.84 7.84 -2.91 -0.02 2.82 16 31 H 0.06 1.63 7.79 -2.39 -0.02 1.61 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.41 7.25 6.50 -92.71 -0.60 6.64 16 34 H 0.16 2.11 6.41 -2.91 -0.02 2.09 16 35 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 36 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -69.70 346.37 1.77 -67.93 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -0.17 Total: 23.63 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 4.37 Total: -4.01 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -4.24 Total: -116.67 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.05 Total: -16.83 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.15 Total: -1.76 kcal Total: -69.70 1.77 -67.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699334524.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.628 kcal (2) G-P(sol) polarization free energy of solvation -69.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds