Wall clock time and date at job start Tue Mar 31 2020 14:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 119.99986 * 2 1 4 4 H 1.48508 * 109.47085 * 269.99933 * 3 2 1 5 5 H 1.48503 * 109.47330 * 29.99723 * 3 2 1 6 6 H 1.48497 * 109.47457 * 150.00313 * 3 2 1 7 7 C 1.38817 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00017 * 359.97438 * 7 2 1 9 9 N 1.36929 * 119.99835 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00158 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47268 * 179.97438 * 10 9 7 12 12 C 1.31002 * 120.00248 * 127.00837 * 11 10 9 13 13 C 1.50699 * 119.99445 * 7.55720 * 12 11 10 14 14 N 1.46501 * 109.47078 * 127.15936 * 13 12 11 15 15 C 1.34773 * 119.99885 * 179.97438 * 14 13 12 16 16 O 1.21557 * 120.00196 * 0.02562 * 15 14 13 17 17 C 1.47780 * 119.99850 * 179.97438 * 15 14 13 18 18 C 1.39615 * 120.14655 * 359.73120 * 17 15 14 19 19 C 1.38019 * 119.84808 * 179.71460 * 18 17 15 20 20 Cl 1.73598 * 119.91992 * 180.29392 * 19 18 17 21 21 C 1.38526 * 120.15659 * 0.56112 * 19 18 17 22 22 C 1.38258 * 120.30305 * 359.71430 * 21 19 18 23 23 C 1.38158 * 120.14599 * 359.97438 * 22 21 19 24 24 Cl 1.73590 * 120.08029 * 179.97438 * 23 22 21 25 25 H 0.97000 * 120.00302 * 359.97438 * 1 2 3 26 26 H 0.97003 * 120.00246 * 359.97438 * 9 7 2 27 27 H 1.09005 * 109.46787 * 59.99963 * 10 9 7 28 28 H 1.08999 * 109.47236 * 300.00106 * 10 9 7 29 29 H 1.08005 * 120.00183 * 307.00367 * 11 10 9 30 30 H 1.07993 * 120.00245 * 187.83335 * 12 11 10 31 31 H 1.09000 * 109.46958 * 247.15872 * 13 12 11 32 32 H 1.08999 * 109.47495 * 7.15708 * 13 12 11 33 33 H 0.97001 * 119.99768 * 0.02562 * 14 13 12 34 34 H 1.08003 * 120.07576 * 359.97438 * 18 17 15 35 35 H 1.07999 * 119.85144 * 179.69314 * 21 19 18 36 36 H 1.07997 * 119.92905 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.5937 -2.1955 0.0000 12 6 6.3625 -2.7472 0.9059 13 6 5.7993 -3.7868 1.8402 14 7 6.6367 -4.9881 1.7959 15 6 6.3236 -6.0562 2.5560 16 8 5.3461 -6.0229 3.2778 17 6 7.1679 -7.2681 2.5109 18 6 8.2875 -7.3121 1.6778 19 6 9.0752 -8.4450 1.6450 20 17 10.4720 -8.4988 0.6156 21 6 8.7506 -9.5412 2.4273 22 6 7.6402 -9.5067 3.2502 23 6 6.8466 -8.3768 3.2977 24 17 5.4524 -8.3356 4.3310 25 1 -0.4850 0.8400 0.0004 26 1 3.8646 -0.3621 0.0004 27 1 3.8491 -3.0423 -0.8903 28 1 3.8485 -3.0427 0.8897 29 1 6.0218 -1.5433 -0.7470 30 1 7.3987 -2.4537 0.9861 31 1 5.7837 -3.3920 2.8561 32 1 4.7845 -4.0398 1.5331 33 1 7.4169 -5.0145 1.2202 34 1 8.5390 -6.4600 1.0637 35 1 9.3676 -10.4269 2.3940 36 1 7.3925 -10.3649 3.8572 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699334538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:42 Heat of formation + Delta-G solvation = 26.004225 kcal Electronic energy + Delta-G solvation = -21634.677024 eV Core-core repulsion = 17979.154485 eV Total energy + Delta-G solvation = -3655.522539 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.63226 -38.92205 -37.21107 -36.68547 -36.54302 -34.72804 -33.11909 -31.90949 -31.01391 -30.78090 -27.07661 -25.33437 -24.16904 -23.07214 -22.08244 -20.88258 -19.45079 -18.35952 -17.27768 -16.98523 -16.54825 -16.10097 -15.72322 -15.50448 -14.93294 -14.77277 -14.41668 -14.14873 -13.77695 -13.66896 -13.13101 -12.87889 -12.77849 -12.72628 -12.52104 -12.47753 -11.99144 -11.65386 -11.38326 -11.36198 -11.23487 -10.87098 -10.56070 -10.13624 -9.84012 -9.79954 -9.60492 -9.33446 -9.16495 -9.06763 -8.69496 -7.23568 -5.77048 -3.13488 0.09446 0.39666 1.43833 1.79513 2.07629 2.37598 3.08518 3.19985 3.37491 3.39903 3.45361 3.99129 4.07707 4.45446 4.53592 4.58791 4.72090 4.85597 5.03873 5.12053 5.15774 5.40485 5.46044 5.50487 5.53797 5.61957 5.76031 5.82077 6.03044 6.16011 6.40322 6.44140 6.72891 6.98309 7.29197 7.98293 8.00811 8.41400 9.19735 9.91586 10.10959 11.41118 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.017111 B = 0.002384 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.013228 B =11742.931002 C =13020.149638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.751 5.751 10 C 0.166 3.834 11 C -0.116 4.116 12 C -0.196 4.196 13 C 0.140 3.860 14 N -0.717 5.717 15 C 0.549 3.451 16 O -0.505 6.505 17 C -0.112 4.112 18 C -0.067 4.067 19 C -0.043 4.043 20 Cl -0.056 7.056 21 C -0.076 4.076 22 C -0.107 4.107 23 C 0.015 3.985 24 Cl -0.016 7.016 25 H 0.260 0.740 26 H 0.362 0.638 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.397 0.603 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.927 -21.239 4.770 33.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.396 5.396 10 C 0.039 3.961 11 C -0.135 4.135 12 C -0.215 4.215 13 C 0.018 3.982 14 N -0.369 5.369 15 C 0.334 3.666 16 O -0.380 6.380 17 C -0.116 4.116 18 C -0.087 4.087 19 C -0.070 4.070 20 Cl -0.027 7.027 21 C -0.095 4.095 22 C -0.126 4.126 23 C -0.014 4.014 24 Cl 0.014 6.986 25 H 0.070 0.930 26 H 0.195 0.805 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.232 0.768 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 23.924 -21.267 5.307 32.447 hybrid contribution 1.105 1.312 -0.401 1.761 sum 25.029 -19.955 4.907 32.384 Atomic orbital electron populations 1.69703 1.05101 1.25887 1.57322 1.24681 0.95258 0.97261 1.01896 0.86525 0.79250 0.84886 0.77747 1.21053 1.21658 1.20278 1.19067 0.80396 0.94880 1.43284 0.89098 1.42612 1.03960 1.01861 1.91216 1.19983 0.86468 0.90004 0.99619 1.23332 0.96816 0.97556 0.95800 1.22622 1.00282 1.00520 0.98088 1.20624 0.95018 0.82691 0.99828 1.45926 1.30989 1.14915 1.45101 1.17919 0.84977 0.82650 0.81061 1.90928 1.26620 1.81673 1.38776 1.19811 0.97140 0.95321 0.99336 1.21192 0.92589 0.97624 0.97297 1.20851 0.92234 0.96225 0.97648 1.98406 1.39679 1.98547 1.66024 1.21222 0.96511 0.97740 0.94031 1.21081 0.94124 0.97552 0.99871 1.21181 0.91643 0.94187 0.94353 1.98457 1.38046 1.98273 1.63873 0.92994 0.80545 0.94502 0.93865 0.86842 0.86894 0.90629 0.88847 0.76824 0.83648 0.83483 0.83193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.63 13.97 55.49 0.78 -28.86 16 2 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.89 22.22 27.74 -169.99 -4.71 17.50 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 7 C -0.25 -7.10 10.47 -15.06 -0.16 -7.26 16 8 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16 9 N -0.75 -18.03 5.40 -61.08 -0.33 -18.36 16 10 C 0.17 3.17 6.35 -5.19 -0.03 3.14 16 11 C -0.12 -1.68 9.63 -36.03 -0.35 -2.03 16 12 C -0.20 -2.36 9.63 -36.03 -0.35 -2.71 16 13 C 0.14 1.83 5.76 -5.19 -0.03 1.80 16 14 N -0.72 -7.66 5.50 -62.45 -0.34 -8.00 16 15 C 0.55 6.86 7.77 -12.36 -0.10 6.76 16 16 O -0.50 -8.17 13.97 5.32 0.07 -8.10 16 17 C -0.11 -1.10 5.88 -104.94 -0.62 -1.72 16 18 C -0.07 -0.49 9.32 -39.15 -0.36 -0.86 16 19 C -0.04 -0.28 6.31 -39.56 -0.25 -0.53 16 20 Cl -0.06 -0.35 28.95 -51.86 -1.50 -1.85 16 21 C -0.08 -0.43 9.82 -39.47 -0.39 -0.82 16 22 C -0.11 -0.71 9.82 -39.60 -0.39 -1.10 16 23 C 0.01 0.14 6.35 -39.07 -0.25 -0.11 16 24 Cl -0.02 -0.19 26.02 -51.86 -1.35 -1.54 16 25 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 26 H 0.36 8.41 5.52 -40.82 -0.23 8.19 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.85 5.30 -51.93 -0.28 0.58 16 29 H 0.11 1.51 8.06 -52.48 -0.42 1.08 16 30 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.09 1.44 5.30 -51.93 -0.28 1.17 16 33 H 0.40 3.00 6.50 -40.82 -0.27 2.74 16 34 H 0.15 0.77 6.41 -52.48 -0.34 0.44 16 35 H 0.15 0.47 8.06 -52.49 -0.42 0.05 16 36 H 0.15 0.65 8.06 -52.49 -0.42 0.22 16 LS Contribution 338.76 15.07 5.11 5.11 Total: -1.00 -34.15 338.76 -9.15 -43.30 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -3.50 Total: 6.17 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -3.36 Total: -5.37 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.10 Total: -55.22 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.07 Total: -8.10 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.50 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -2.85 Total: -3.39 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.15 -9.15 -43.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699334538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.300 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds