Wall clock time and date at job start Tue Mar 31 2020 14:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 119.99986 * 2 1 4 4 H 1.48508 * 109.47085 * 269.99933 * 3 2 1 5 5 H 1.48503 * 109.47330 * 29.99723 * 3 2 1 6 6 H 1.48497 * 109.47457 * 150.00313 * 3 2 1 7 7 C 1.38817 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00017 * 359.97438 * 7 2 1 9 9 N 1.36929 * 119.99835 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00158 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47268 * 179.97438 * 10 9 7 12 12 C 1.31002 * 120.00248 * 127.00837 * 11 10 9 13 13 C 1.50699 * 119.99445 * 7.55720 * 12 11 10 14 14 N 1.46501 * 109.47078 * 127.15936 * 13 12 11 15 15 C 1.34773 * 119.99885 * 179.97438 * 14 13 12 16 16 O 1.21557 * 120.00196 * 0.02562 * 15 14 13 17 17 C 1.47780 * 119.99850 * 179.97438 * 15 14 13 18 18 C 1.39615 * 120.14655 * 359.73120 * 17 15 14 19 19 C 1.38019 * 119.84808 * 179.71460 * 18 17 15 20 20 Cl 1.73598 * 119.91992 * 180.29392 * 19 18 17 21 21 C 1.38526 * 120.15659 * 0.56112 * 19 18 17 22 22 C 1.38258 * 120.30305 * 359.71430 * 21 19 18 23 23 C 1.38158 * 120.14599 * 359.97438 * 22 21 19 24 24 Cl 1.73590 * 120.08029 * 179.97438 * 23 22 21 25 25 H 0.97000 * 120.00302 * 359.97438 * 1 2 3 26 26 H 0.97003 * 120.00246 * 359.97438 * 9 7 2 27 27 H 1.09005 * 109.46787 * 59.99963 * 10 9 7 28 28 H 1.08999 * 109.47236 * 300.00106 * 10 9 7 29 29 H 1.08005 * 120.00183 * 307.00367 * 11 10 9 30 30 H 1.07993 * 120.00245 * 187.83335 * 12 11 10 31 31 H 1.09000 * 109.46958 * 247.15872 * 13 12 11 32 32 H 1.08999 * 109.47495 * 7.15708 * 13 12 11 33 33 H 0.97001 * 119.99768 * 0.02562 * 14 13 12 34 34 H 1.08003 * 120.07576 * 359.97438 * 18 17 15 35 35 H 1.07999 * 119.85144 * 179.69314 * 21 19 18 36 36 H 1.07997 * 119.92905 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.5937 -2.1955 0.0000 12 6 6.3625 -2.7472 0.9059 13 6 5.7993 -3.7868 1.8402 14 7 6.6367 -4.9881 1.7959 15 6 6.3236 -6.0562 2.5560 16 8 5.3461 -6.0229 3.2778 17 6 7.1679 -7.2681 2.5109 18 6 8.2875 -7.3121 1.6778 19 6 9.0752 -8.4450 1.6450 20 17 10.4720 -8.4988 0.6156 21 6 8.7506 -9.5412 2.4273 22 6 7.6402 -9.5067 3.2502 23 6 6.8466 -8.3768 3.2977 24 17 5.4524 -8.3356 4.3310 25 1 -0.4850 0.8400 0.0004 26 1 3.8646 -0.3621 0.0004 27 1 3.8491 -3.0423 -0.8903 28 1 3.8485 -3.0427 0.8897 29 1 6.0218 -1.5433 -0.7470 30 1 7.3987 -2.4537 0.9861 31 1 5.7837 -3.3920 2.8561 32 1 4.7845 -4.0398 1.5331 33 1 7.4169 -5.0145 1.2202 34 1 8.5390 -6.4600 1.0637 35 1 9.3676 -10.4269 2.3940 36 1 7.3925 -10.3649 3.8572 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699334538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:42 Heat of formation + Delta-G solvation = 2.996458 kcal Electronic energy + Delta-G solvation = -21635.674716 eV Core-core repulsion = 17979.154485 eV Total energy + Delta-G solvation = -3656.520231 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.42566 -39.70520 -38.09457 -37.73528 -37.21322 -36.21383 -34.56253 -33.09879 -32.29506 -31.60729 -28.42246 -26.73153 -24.91062 -24.04868 -23.69402 -21.78647 -20.65518 -19.74805 -18.62054 -17.80147 -17.43875 -17.05699 -16.51395 -16.43922 -16.38109 -15.83049 -15.48778 -15.40584 -14.96432 -14.76564 -14.49155 -14.31704 -14.12000 -13.54992 -13.35885 -13.34205 -13.13513 -12.98818 -12.73797 -12.35194 -12.20790 -12.01712 -12.00949 -11.88086 -11.65441 -11.07092 -10.79997 -10.45771 -10.31195 -9.98769 -9.73592 -9.27674 -8.05168 -5.40228 -0.55091 -0.15983 0.88486 0.98627 1.13483 1.37322 1.42298 1.49944 1.63245 2.18253 2.45631 2.47501 3.25837 3.41198 3.47993 3.75238 3.84635 3.89238 3.94982 4.10465 4.16333 4.31392 4.51759 4.55251 4.59281 4.82021 4.86738 4.89597 4.95711 5.04803 5.28184 5.31785 5.54852 5.69890 5.85169 6.18411 6.43268 7.04834 7.11259 7.78947 8.00562 9.16387 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.017111 B = 0.002384 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.013228 B =11742.931002 C =13020.149638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.066 4.066 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.295 1.295 6 H -0.248 1.248 7 C -0.243 4.243 8 H 0.051 0.949 9 N -0.753 5.753 10 C 0.161 3.839 11 C -0.136 4.136 12 C -0.155 4.155 13 C 0.139 3.861 14 N -0.702 5.702 15 C 0.544 3.456 16 O -0.551 6.551 17 C -0.130 4.130 18 C -0.061 4.061 19 C -0.045 4.045 20 Cl -0.047 7.047 21 C -0.061 4.061 22 C -0.102 4.102 23 C -0.003 4.003 24 Cl -0.046 7.046 25 H 0.259 0.741 26 H 0.369 0.631 27 H 0.028 0.972 28 H 0.034 0.966 29 H 0.136 0.864 30 H 0.156 0.844 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.415 0.585 34 H 0.165 0.835 35 H 0.178 0.822 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.384 -21.368 4.233 36.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.258 4.258 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.222 1.222 6 H -0.173 1.173 7 C -0.373 4.373 8 H 0.069 0.931 9 N -0.399 5.399 10 C 0.036 3.964 11 C -0.155 4.155 12 C -0.174 4.174 13 C 0.016 3.984 14 N -0.356 5.356 15 C 0.331 3.669 16 O -0.430 6.430 17 C -0.135 4.135 18 C -0.080 4.080 19 C -0.072 4.072 20 Cl -0.018 7.018 21 C -0.080 4.080 22 C -0.120 4.120 23 C -0.031 4.031 24 Cl -0.016 7.016 25 H 0.068 0.932 26 H 0.203 0.797 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.154 0.846 30 H 0.174 0.826 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.253 0.747 34 H 0.183 0.817 35 H 0.196 0.804 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 28.468 -21.429 4.742 35.946 hybrid contribution -0.206 1.126 -0.235 1.168 sum 28.262 -20.303 4.507 35.090 Atomic orbital electron populations 1.69905 1.07327 1.26928 1.59290 1.25625 0.96249 1.01718 1.02186 0.85291 0.78643 0.78786 0.78343 1.19918 1.22197 1.17268 1.19032 0.82743 0.93503 1.42062 0.93078 1.42592 1.02309 1.03995 1.91014 1.20068 0.89765 0.87884 0.98694 1.23073 0.93702 1.00389 0.98374 1.22834 1.01662 0.97795 0.95139 1.20447 0.94282 0.84002 0.99685 1.45708 1.31072 1.13809 1.44986 1.18397 0.84646 0.83534 0.80286 1.90905 1.28725 1.82585 1.40783 1.19623 0.98164 0.94393 1.01287 1.21325 0.91502 0.98657 0.96543 1.20970 0.92296 0.96227 0.97723 1.98418 1.39082 1.98512 1.65751 1.21590 0.95797 0.98329 0.92288 1.21338 0.93636 0.97115 0.99945 1.21428 0.91521 0.95486 0.94679 1.98443 1.39911 1.98387 1.64898 0.93189 0.79726 0.95384 0.94826 0.84614 0.82609 0.91433 0.91911 0.74693 0.81726 0.80429 0.80965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.68 13.97 21.65 0.30 -64.38 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 3 Si 0.96 45.83 27.74 68.60 1.90 47.73 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.25 -10.54 6.52 99.48 0.65 -9.89 16 7 C -0.24 -14.39 10.47 84.04 0.88 -13.51 16 8 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 9 N -0.75 -36.06 5.40 -347.17 -1.87 -37.93 16 10 C 0.16 6.21 6.35 85.63 0.54 6.76 16 11 C -0.14 -3.63 9.63 25.64 0.25 -3.38 16 12 C -0.16 -3.25 9.63 25.64 0.25 -3.00 16 13 C 0.14 3.51 5.76 85.63 0.49 4.01 16 14 N -0.70 -14.15 5.50 -469.78 -2.58 -16.73 16 15 C 0.54 13.64 7.77 86.77 0.67 14.32 16 16 O -0.55 -18.72 13.97 -3.89 -0.05 -18.78 16 17 C -0.13 -2.46 5.88 -20.07 -0.12 -2.57 16 18 C -0.06 -0.75 9.32 22.55 0.21 -0.54 16 19 C -0.05 -0.46 6.31 22.29 0.14 -0.32 16 20 Cl -0.05 -0.43 28.95 -2.72 -0.08 -0.51 16 21 C -0.06 -0.49 9.82 22.34 0.22 -0.27 16 22 C -0.10 -1.12 9.82 22.26 0.22 -0.90 16 23 C 0.00 -0.06 6.35 22.60 0.14 0.09 16 24 Cl -0.05 -1.10 26.02 -2.72 -0.07 -1.18 16 25 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 26 H 0.37 16.44 5.52 -92.71 -0.51 15.93 16 27 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.03 1.38 5.30 -2.39 -0.01 1.37 16 29 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 30 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.06 2.01 5.30 -2.39 -0.01 2.00 16 33 H 0.41 5.14 6.50 -92.71 -0.60 4.53 16 34 H 0.17 1.22 6.41 -2.91 -0.02 1.21 16 35 H 0.18 0.34 8.06 -2.91 -0.02 0.32 16 36 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -78.60 338.76 1.89 -76.71 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -0.02 Total: 17.94 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 4.37 Total: -2.88 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -4.15 Total: -119.04 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.05 Total: -18.78 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.90 Total: 47.73 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.15 Total: -1.69 kcal Total: -78.60 1.89 -76.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699334538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.709 kcal (2) G-P(sol) polarization free energy of solvation -78.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds