Wall clock time and date at job start Tue Mar 31 2020 15:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35848 * 116.99703 * 2 1 4 4 C 1.38891 * 119.91376 * 179.97438 * 3 2 1 5 5 C 1.37823 * 120.09111 * 179.97438 * 4 3 2 6 6 C 1.39631 * 119.90822 * 359.97438 * 5 4 3 7 7 C 1.47780 * 120.08738 * 179.97438 * 6 5 4 8 8 C 1.34244 * 124.80563 * 179.72023 * 7 6 5 9 9 C 1.39483 * 115.60479 * 180.26890 * 8 7 6 10 10 N 1.37111 * 128.98555 * 179.97438 * 9 8 7 11 11 C 1.29567 * 121.65890 * 179.97438 * 10 9 8 12 12 N 1.36277 * 122.16944 * 0.03510 * 11 10 9 13 13 C 1.37073 * 119.97002 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00003 * 151.57049 * 13 12 11 15 15 C 1.39079 * 119.99691 * 331.57531 * 13 12 11 16 16 N 1.31259 * 120.00428 * 342.03444 * 15 13 12 17 17 Si 1.86799 * 120.00155 * 162.03223 * 15 13 12 18 18 H 1.48500 * 109.47186 * 94.46451 * 17 15 13 19 19 H 1.48496 * 109.47654 * 214.46571 * 17 15 13 20 20 H 1.48501 * 109.47062 * 334.46994 * 17 15 13 21 21 C 1.34868 * 120.06513 * 359.97438 * 12 11 10 22 22 O 1.21980 * 120.59714 * 180.02562 * 21 12 11 23 23 C 1.39341 * 112.79627 * 359.97438 * 9 8 7 24 24 S 1.75574 * 124.80112 * 0.02562 * 7 6 5 25 25 C 1.39630 * 119.82683 * 0.25085 * 6 5 4 26 26 C 1.37824 * 119.91094 * 359.51076 * 25 6 5 27 27 H 1.08991 * 109.47432 * 300.00249 * 1 2 3 28 28 H 1.09000 * 109.46768 * 60.00919 * 1 2 3 29 29 H 1.09002 * 109.46862 * 180.02562 * 1 2 3 30 30 H 1.07994 * 119.95203 * 359.97438 * 4 3 2 31 31 H 1.07994 * 120.04514 * 179.97438 * 5 4 3 32 32 H 1.08007 * 122.19791 * 0.24286 * 8 7 6 33 33 H 1.07999 * 118.91452 * 180.02562 * 11 10 9 34 34 H 0.96999 * 120.00525 * 180.02562 * 16 15 13 35 35 H 1.08002 * 120.04419 * 179.72703 * 25 6 5 36 36 H 1.07993 * 119.95969 * 180.23053 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 6 3.4328 1.2811 0.0005 5 6 4.0622 2.5072 0.0000 6 6 3.3034 3.6794 -0.0016 7 6 3.9742 4.9961 -0.0016 8 6 3.3399 6.1792 -0.0085 9 6 4.1636 7.3049 -0.0130 10 7 3.8130 8.6303 -0.0207 11 6 4.7052 9.5698 -0.0236 12 7 6.0413 9.3015 -0.0199 13 6 6.9464 10.3309 -0.0238 14 1 7.9199 10.1957 0.4238 15 6 6.6110 11.5496 -0.6041 16 7 5.6036 11.6222 -1.4424 17 14 7.5941 13.0831 -0.1904 18 1 8.6560 13.2803 -1.2096 19 1 6.6917 14.2623 -0.1814 20 1 8.2165 12.9258 1.1487 21 6 6.4740 8.0242 -0.0126 22 8 7.6676 7.7729 -0.0088 23 6 5.5191 6.9819 -0.0089 24 16 5.7137 5.2346 -0.0003 25 6 1.9092 3.6041 0.0026 26 6 1.2873 2.3741 -0.0018 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 4.0189 0.3741 0.0014 31 1 5.1408 2.5613 0.0008 32 1 2.2624 6.2546 -0.0108 33 1 4.3794 10.5995 -0.0292 34 1 5.3699 12.4721 -1.8474 35 1 1.3188 4.5085 0.0058 36 1 0.2090 2.3150 -0.0023 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005325809.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:18 Heat of formation + Delta-G solvation = 11.025582 kcal Electronic energy + Delta-G solvation = -23615.181337 eV Core-core repulsion = 19963.485831 eV Total energy + Delta-G solvation = -3651.695506 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.49046 -40.24348 -38.01178 -36.75873 -35.79084 -33.76139 -31.88657 -31.27516 -30.65396 -28.51311 -27.41812 -25.89515 -24.23707 -23.37191 -22.74599 -21.33337 -20.26527 -18.90717 -18.39151 -17.59641 -16.61725 -16.25241 -15.97305 -15.77319 -15.40054 -15.14443 -14.77974 -14.64576 -14.38349 -13.87078 -13.57709 -13.30070 -13.23718 -12.68280 -12.48260 -12.39401 -12.24845 -12.17667 -11.89926 -11.64251 -11.45627 -11.38282 -11.09572 -10.93792 -10.66108 -10.41926 -9.81462 -9.18095 -9.08368 -9.04555 -8.88574 -8.58725 -7.70605 -7.23188 -6.97156 -4.67368 0.55731 1.22357 1.59498 1.96255 2.40775 2.55813 2.88447 2.95081 3.02318 3.04075 3.24033 3.65706 3.77641 4.19353 4.37032 4.55088 4.60752 4.70352 4.85735 4.86158 4.93708 5.13166 5.18532 5.24106 5.27418 5.47196 5.58100 5.83428 5.87740 6.02368 6.15399 6.18407 6.35178 6.46100 6.56136 6.64149 6.87551 6.96503 7.17514 7.35325 7.85457 8.18158 8.48232 9.02704 9.23635 9.92820 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.038052 B = 0.002567 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.660402 B =10906.234556 C =11544.899768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.122 3.878 4 C -0.145 4.145 5 C -0.071 4.071 6 C -0.040 4.040 7 C -0.129 4.129 8 C -0.107 4.107 9 C 0.151 3.849 10 N -0.545 5.545 11 C 0.360 3.640 12 N -0.338 5.338 13 C -0.328 4.328 14 H 0.122 0.878 15 C 0.046 3.954 16 N -0.839 5.839 17 Si 0.947 3.053 18 H -0.268 1.268 19 H -0.272 1.272 20 H -0.259 1.259 21 C 0.515 3.485 22 O -0.568 6.568 23 C -0.332 4.332 24 S 0.160 5.840 25 C -0.062 4.062 26 C -0.203 4.203 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.142 0.858 33 H 0.204 0.796 34 H 0.290 0.710 35 H 0.132 0.868 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.563 -13.585 2.373 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.077 3.923 4 C -0.163 4.163 5 C -0.090 4.090 6 C -0.043 4.043 7 C -0.249 4.249 8 C -0.139 4.139 9 C 0.023 3.977 10 N -0.272 5.272 11 C 0.076 3.924 12 N -0.038 5.038 13 C -0.457 4.457 14 H 0.139 0.861 15 C -0.166 4.166 16 N -0.470 5.470 17 Si 0.769 3.231 18 H -0.193 1.193 19 H -0.196 1.196 20 H -0.182 1.182 21 C 0.314 3.686 22 O -0.451 6.451 23 C -0.456 4.456 24 S 0.424 5.576 25 C -0.082 4.082 26 C -0.222 4.222 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.159 0.841 33 H 0.220 0.780 34 H 0.102 0.898 35 H 0.150 0.850 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.344 -14.626 2.239 17.500 hybrid contribution -0.364 1.748 -0.187 1.795 sum -9.708 -12.878 2.052 16.257 Atomic orbital electron populations 1.23058 0.78425 1.03861 1.01490 1.86046 1.21379 1.27059 1.88703 1.19122 0.92326 0.84086 0.96774 1.20279 0.91261 0.98393 1.06375 1.21054 0.99884 0.90708 0.97350 1.17985 0.92679 0.89954 1.03645 1.22661 0.97866 0.95169 1.09163 1.19470 1.00467 0.89029 1.04959 1.18797 0.89310 0.92043 0.97563 1.68638 1.33644 0.97644 1.27241 1.24896 0.78753 0.99682 0.89069 1.42650 1.07504 1.06911 1.46732 1.20221 0.99452 0.88554 1.37489 0.86060 1.25770 0.97325 1.00726 0.92748 1.69772 1.27165 1.28503 1.21597 0.85585 0.79157 0.78221 0.80089 1.19327 1.19627 1.18248 1.15989 0.88313 0.82136 0.82140 1.90770 1.16466 1.82946 1.54936 1.24376 0.97908 0.98330 1.24989 1.83448 1.00215 0.98448 1.75500 1.21035 0.93209 0.97463 0.96457 1.21133 1.00029 0.91994 1.09012 0.92570 0.92558 0.88326 0.84874 0.85008 0.84061 0.77961 0.89848 0.84986 0.85172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.25 10.49 -19.26 -0.20 -3.45 16 3 C 0.12 1.38 6.69 -39.09 -0.26 1.11 16 4 C -0.14 -1.66 9.97 -39.49 -0.39 -2.05 16 5 C -0.07 -0.90 9.58 -39.21 -0.38 -1.28 16 6 C -0.04 -0.57 5.87 -104.96 -0.62 -1.19 16 7 C -0.13 -2.19 6.32 -37.09 -0.23 -2.43 16 8 C -0.11 -1.94 9.62 -40.53 -0.39 -2.33 16 9 C 0.15 3.36 6.99 -84.63 -0.59 2.77 16 10 N -0.55 -12.60 10.49 -12.15 -0.13 -12.73 16 11 C 0.36 8.63 10.28 -90.00 -0.93 7.70 16 12 N -0.34 -8.82 2.75 -65.77 -0.18 -9.00 16 13 C -0.33 -8.41 9.12 -14.90 -0.14 -8.54 16 14 H 0.12 3.17 7.58 -52.49 -0.40 2.77 16 15 C 0.05 1.06 4.99 -17.48 -0.09 0.97 16 16 N -0.84 -19.89 11.19 55.50 0.62 -19.27 16 17 Si 0.95 17.72 29.59 -169.99 -5.03 12.69 16 18 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 19 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 20 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 21 C 0.52 13.88 7.41 -15.03 -0.11 13.77 16 22 O -0.57 -16.55 16.93 4.94 0.08 -16.47 16 23 C -0.33 -7.90 6.47 -37.99 -0.25 -8.15 16 24 S 0.16 3.06 22.14 -107.50 -2.38 0.68 16 25 C -0.06 -0.74 9.52 -39.21 -0.37 -1.12 16 26 C -0.20 -2.14 9.02 -39.49 -0.36 -2.49 16 27 H 0.06 0.30 7.66 -51.93 -0.40 -0.09 16 28 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.13 1.57 7.24 -52.49 -0.38 1.19 16 32 H 0.14 2.19 6.79 -52.48 -0.36 1.83 16 33 H 0.20 4.64 6.15 -52.49 -0.32 4.32 16 34 H 0.29 6.24 8.31 -40.82 -0.34 5.90 16 35 H 0.13 1.41 6.69 -52.49 -0.35 1.06 16 36 H 0.13 1.03 6.28 -52.49 -0.33 0.70 16 LS Contribution 327.09 15.07 4.93 4.93 Total: -1.00 -30.51 327.09 -9.31 -39.82 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -2.91 Total: 4.90 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -4.11 Total: -2.09 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.31 Total: -41.01 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.12 Total: -19.92 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -2.38 Total: 0.68 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.51 -9.31 -39.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005325809.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.843 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds