Wall clock time and date at job start Tue Mar 31 2020 15:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35848 * 116.99703 * 2 1 4 4 C 1.38891 * 119.91376 * 179.97438 * 3 2 1 5 5 C 1.37823 * 120.09111 * 179.97438 * 4 3 2 6 6 C 1.39631 * 119.90822 * 359.97438 * 5 4 3 7 7 C 1.47780 * 120.08738 * 179.97438 * 6 5 4 8 8 C 1.34244 * 124.80563 * 179.72023 * 7 6 5 9 9 C 1.39483 * 115.60479 * 180.26890 * 8 7 6 10 10 N 1.37111 * 128.98555 * 179.97438 * 9 8 7 11 11 C 1.29567 * 121.65890 * 179.97438 * 10 9 8 12 12 N 1.36277 * 122.16944 * 0.03510 * 11 10 9 13 13 C 1.37073 * 119.97002 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00003 * 151.57049 * 13 12 11 15 15 C 1.39079 * 119.99691 * 331.57531 * 13 12 11 16 16 N 1.31259 * 120.00428 * 342.03444 * 15 13 12 17 17 Si 1.86799 * 120.00155 * 162.03223 * 15 13 12 18 18 H 1.48500 * 109.47186 * 94.46451 * 17 15 13 19 19 H 1.48496 * 109.47654 * 214.46571 * 17 15 13 20 20 H 1.48501 * 109.47062 * 334.46994 * 17 15 13 21 21 C 1.34868 * 120.06513 * 359.97438 * 12 11 10 22 22 O 1.21980 * 120.59714 * 180.02562 * 21 12 11 23 23 C 1.39341 * 112.79627 * 359.97438 * 9 8 7 24 24 S 1.75574 * 124.80112 * 0.02562 * 7 6 5 25 25 C 1.39630 * 119.82683 * 0.25085 * 6 5 4 26 26 C 1.37824 * 119.91094 * 359.51076 * 25 6 5 27 27 H 1.08991 * 109.47432 * 300.00249 * 1 2 3 28 28 H 1.09000 * 109.46768 * 60.00919 * 1 2 3 29 29 H 1.09002 * 109.46862 * 180.02562 * 1 2 3 30 30 H 1.07994 * 119.95203 * 359.97438 * 4 3 2 31 31 H 1.07994 * 120.04514 * 179.97438 * 5 4 3 32 32 H 1.08007 * 122.19791 * 0.24286 * 8 7 6 33 33 H 1.07999 * 118.91452 * 180.02562 * 11 10 9 34 34 H 0.96999 * 120.00525 * 180.02562 * 16 15 13 35 35 H 1.08002 * 120.04419 * 179.72703 * 25 6 5 36 36 H 1.07993 * 119.95969 * 180.23053 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 6 3.4328 1.2811 0.0005 5 6 4.0622 2.5072 0.0000 6 6 3.3034 3.6794 -0.0016 7 6 3.9742 4.9961 -0.0016 8 6 3.3399 6.1792 -0.0085 9 6 4.1636 7.3049 -0.0130 10 7 3.8130 8.6303 -0.0207 11 6 4.7052 9.5698 -0.0236 12 7 6.0413 9.3015 -0.0199 13 6 6.9464 10.3309 -0.0238 14 1 7.9199 10.1957 0.4238 15 6 6.6110 11.5496 -0.6041 16 7 5.6036 11.6222 -1.4424 17 14 7.5941 13.0831 -0.1904 18 1 8.6560 13.2803 -1.2096 19 1 6.6917 14.2623 -0.1814 20 1 8.2165 12.9258 1.1487 21 6 6.4740 8.0242 -0.0126 22 8 7.6676 7.7729 -0.0088 23 6 5.5191 6.9819 -0.0089 24 16 5.7137 5.2346 -0.0003 25 6 1.9092 3.6041 0.0026 26 6 1.2873 2.3741 -0.0018 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 4.0189 0.3741 0.0014 31 1 5.1408 2.5613 0.0008 32 1 2.2624 6.2546 -0.0108 33 1 4.3794 10.5995 -0.0292 34 1 5.3699 12.4721 -1.8474 35 1 1.3188 4.5085 0.0058 36 1 0.2090 2.3150 -0.0023 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005325809.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:18 Heat of formation + Delta-G solvation = -5.900451 kcal Electronic energy + Delta-G solvation = -23615.915305 eV Core-core repulsion = 19963.485831 eV Total energy + Delta-G solvation = -3652.429474 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.34467 -41.10687 -39.18476 -38.31573 -37.59250 -35.39733 -33.63286 -32.22024 -31.99609 -29.89497 -28.34809 -27.44495 -25.92104 -24.79227 -23.89000 -22.62354 -21.75893 -20.63355 -19.44924 -19.01492 -18.21029 -17.70597 -17.39643 -16.88256 -16.63580 -16.59679 -16.35785 -16.00360 -15.65909 -15.11837 -14.74987 -14.64107 -14.51185 -14.11254 -14.03421 -13.85360 -13.67896 -13.46356 -13.14537 -13.01395 -12.85851 -12.75118 -12.18607 -12.13321 -12.04688 -11.63939 -11.44468 -11.09393 -10.83541 -10.58737 -10.17822 -10.06672 -9.05855 -8.84474 -8.66888 -6.60709 -0.84963 0.20858 0.34162 0.40486 0.80800 0.97152 1.32948 1.40092 1.55882 1.59141 2.06678 2.35034 2.41106 2.53193 2.79515 3.04991 3.10179 3.68397 3.80679 3.89817 3.91793 4.12075 4.20803 4.34601 4.44743 4.45755 4.52604 4.62034 4.75977 4.81150 4.94946 5.03850 5.08471 5.14369 5.25758 5.34913 5.45201 5.52413 5.65548 5.97673 6.27380 6.40567 6.60310 7.14336 7.29122 8.17502 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.038052 B = 0.002567 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.660402 B =10906.234556 C =11544.899768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.330 6.330 3 C 0.131 3.869 4 C -0.153 4.153 5 C -0.071 4.071 6 C -0.076 4.076 7 C -0.086 4.086 8 C -0.131 4.131 9 C 0.151 3.849 10 N -0.543 5.543 11 C 0.356 3.644 12 N -0.348 5.348 13 C -0.374 4.374 14 H 0.102 0.898 15 C 0.021 3.979 16 N -0.860 5.860 17 Si 1.018 2.982 18 H -0.268 1.268 19 H -0.249 1.249 20 H -0.260 1.260 21 C 0.491 3.509 22 O -0.613 6.613 23 C -0.377 4.377 24 S 0.175 5.825 25 C -0.053 4.053 26 C -0.201 4.201 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.119 0.881 30 H 0.149 0.851 31 H 0.132 0.868 32 H 0.174 0.826 33 H 0.211 0.789 34 H 0.302 0.698 35 H 0.148 0.852 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.417 -15.129 2.368 20.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.243 6.243 3 C 0.085 3.915 4 C -0.172 4.172 5 C -0.090 4.090 6 C -0.079 4.079 7 C -0.205 4.205 8 C -0.162 4.162 9 C 0.022 3.978 10 N -0.269 5.269 11 C 0.072 3.928 12 N -0.048 5.048 13 C -0.502 4.502 14 H 0.120 0.880 15 C -0.188 4.188 16 N -0.492 5.492 17 Si 0.836 3.164 18 H -0.193 1.193 19 H -0.173 1.173 20 H -0.184 1.184 21 C 0.292 3.708 22 O -0.500 6.500 23 C -0.498 4.498 24 S 0.440 5.560 25 C -0.073 4.073 26 C -0.219 4.219 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.137 0.863 30 H 0.167 0.833 31 H 0.150 0.850 32 H 0.191 0.809 33 H 0.227 0.773 34 H 0.114 0.886 35 H 0.166 0.834 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.257 -16.183 2.228 20.422 hybrid contribution 0.279 1.823 -0.206 1.856 sum -11.978 -14.359 2.022 18.808 Atomic orbital electron populations 1.23409 0.76175 1.05774 1.02579 1.86053 1.23707 1.26485 1.88101 1.19330 0.92443 0.84898 0.94843 1.20466 0.91975 0.98426 1.06318 1.21126 1.00046 0.90934 0.96882 1.17999 0.93790 0.88523 1.07540 1.23029 0.96303 0.96449 1.04758 1.19612 1.01721 0.87722 1.07134 1.19326 0.89527 0.92524 0.96442 1.68641 1.33308 0.98238 1.26693 1.25065 0.78256 1.00278 0.89176 1.42762 1.08219 1.06877 1.46952 1.20304 0.99602 0.89957 1.40334 0.88007 1.26673 0.98129 1.02514 0.91488 1.69783 1.27928 1.29967 1.21513 0.84598 0.77831 0.74509 0.79473 1.19317 1.17272 1.18387 1.16535 0.88522 0.83221 0.82491 1.90694 1.18033 1.83674 1.57598 1.24537 0.98114 1.00270 1.26922 1.83300 1.02422 0.95147 1.75157 1.21258 0.92247 0.98873 0.94936 1.21428 1.01607 0.90964 1.07923 0.91388 0.91434 0.86268 0.83333 0.84970 0.80866 0.77314 0.88631 0.83406 0.82097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -5.50 10.49 -91.85 -0.96 -6.47 16 3 C 0.13 2.48 6.69 22.58 0.15 2.63 16 4 C -0.15 -3.10 9.97 22.33 0.22 -2.88 16 5 C -0.07 -1.66 9.58 22.51 0.22 -1.45 16 6 C -0.08 -1.97 5.87 -20.08 -0.12 -2.08 16 7 C -0.09 -2.80 6.32 23.88 0.15 -2.65 16 8 C -0.13 -4.63 9.62 21.66 0.21 -4.42 16 9 C 0.15 6.81 6.99 38.88 0.27 7.08 16 10 N -0.54 -25.56 10.49 -192.37 -2.02 -27.58 16 11 C 0.36 17.75 10.28 180.13 1.85 19.60 16 12 N -0.35 -19.22 2.75 -480.03 -1.32 -20.54 16 13 C -0.37 -20.29 9.12 84.08 0.77 -19.52 16 14 H 0.10 5.75 7.58 -2.91 -0.02 5.73 16 15 C 0.02 1.02 4.99 84.98 0.42 1.44 16 16 N -0.86 -41.33 11.19 21.68 0.24 -41.09 16 17 Si 1.02 36.51 29.59 68.60 2.03 38.54 16 18 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 19 H -0.25 -8.02 7.11 99.48 0.71 -7.31 16 20 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 21 C 0.49 28.14 7.41 84.99 0.63 28.76 16 22 O -0.61 -38.26 16.93 -5.25 -0.09 -38.35 16 23 C -0.38 -18.61 6.47 23.30 0.15 -18.46 16 24 S 0.18 6.81 22.14 -56.49 -1.25 5.56 16 25 C -0.05 -1.09 9.52 22.51 0.21 -0.88 16 26 C -0.20 -3.38 9.02 22.33 0.20 -3.18 16 27 H 0.07 0.43 7.66 -2.39 -0.02 0.41 16 28 H 0.07 0.43 7.65 -2.39 -0.02 0.41 16 29 H 0.12 0.50 8.14 -2.39 -0.02 0.49 16 30 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 31 H 0.13 3.00 7.24 -2.91 -0.02 2.98 16 32 H 0.17 4.90 6.79 -2.91 -0.02 4.88 16 33 H 0.21 9.90 6.15 -2.91 -0.02 9.88 16 34 H 0.30 12.88 8.31 -92.71 -0.77 12.11 16 35 H 0.15 2.54 6.69 -2.91 -0.02 2.52 16 36 H 0.16 1.70 6.28 -2.91 -0.02 1.68 16 Total: -1.00 -70.21 327.09 4.24 -65.97 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 1.15 Total: 18.72 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 6.45 Total: 5.23 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -3.09 Total: -89.21 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -1.05 Total: -44.82 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 2.03 Total: 38.54 kcal Atomic # 16 Polarization: 6.81 SS G_CDS: -1.25 Total: 5.56 kcal Total: -70.21 4.24 -65.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005325809.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.071 kcal (2) G-P(sol) polarization free energy of solvation -70.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds