Wall clock time and date at job start Tue Mar 31 2020 15:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31654 * 1 3 3 Si 1.86792 * 120.00306 * 2 1 4 4 H 1.48501 * 109.47458 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47054 * 299.99309 * 3 2 1 6 6 H 1.48503 * 109.47625 * 59.99601 * 3 2 1 7 7 C 1.38637 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00362 * 180.02562 * 7 2 1 9 9 S 1.76207 * 119.99766 * 359.73468 * 7 2 1 10 10 C 1.76209 * 99.99718 * 179.97438 * 9 7 2 11 11 N 1.31566 * 126.38978 * 0.02562 * 10 9 7 12 12 N 1.28523 * 110.02704 * 179.97438 * 11 10 9 13 13 C 1.31501 * 109.94619 * 359.97438 * 12 11 10 14 14 C 1.47787 * 126.44165 * 180.02562 * 13 12 11 15 15 C 1.40039 * 120.56081 * 17.84958 * 14 13 12 16 16 C 1.38347 * 118.28423 * 179.97438 * 15 14 13 17 17 C 1.38363 * 119.31075 * 0.02562 * 16 15 14 18 18 N 1.31918 * 121.08860 * 0.02562 * 17 16 15 19 19 C 1.31697 * 121.87740 * 359.66270 * 18 17 16 20 20 N 1.36733 * 126.38665 * 179.71145 * 10 9 7 21 21 C 1.46504 * 127.15759 * 0.02562 * 20 10 9 22 22 C 1.50694 * 109.47345 * 83.33089 * 21 20 10 23 23 C 1.34519 * 125.79123 * 96.69805 * 22 21 20 24 24 C 1.41376 * 106.83860 * 179.88939 * 23 22 21 25 25 C 1.34507 * 106.84824 * 0.37248 * 24 23 22 26 26 O 1.34306 * 125.78952 * 277.00804 * 22 21 20 27 27 H 0.97007 * 119.99219 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.85736 * 0.02585 * 15 14 13 29 29 H 1.07999 * 120.34145 * 180.02562 * 16 15 14 30 30 H 1.07995 * 119.45106 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.72067 * 180.33824 * 19 18 17 32 32 H 1.08995 * 109.47145 * 203.33556 * 21 20 10 33 33 H 1.09002 * 109.46628 * 323.33181 * 21 20 10 34 34 H 1.07995 * 126.57675 * 0.02562 * 23 22 21 35 35 H 1.08008 * 126.57498 * 180.12194 * 24 23 22 36 36 H 1.07996 * 125.79470 * 179.79316 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2506 1.6176 0.0000 4 1 3.7106 1.3463 0.0006 5 1 1.8920 2.3963 -1.2126 6 1 1.8919 2.3965 1.2124 7 6 2.0097 -1.2007 0.0005 8 1 3.0897 -1.2008 0.0010 9 16 1.1285 -2.7266 0.0083 10 6 2.4783 -3.8593 0.0052 11 7 3.7570 -3.5497 -0.0007 12 7 4.4689 -4.6198 -0.0007 13 6 3.6883 -5.6780 0.0057 14 6 4.1238 -7.0902 0.0084 15 6 5.4320 -7.4312 0.3738 16 6 5.7891 -8.7677 0.3603 17 6 4.8520 -9.7155 -0.0108 18 7 3.6266 -9.3650 -0.3513 19 6 3.2369 -8.1071 -0.3484 20 7 2.3921 -5.2239 0.0146 21 6 1.1711 -6.0333 0.0286 22 6 0.6511 -6.1824 -1.3779 23 6 0.8765 -7.2284 -2.1933 24 6 0.2039 -6.9545 -3.4062 25 6 -0.3855 -5.7539 -3.2627 26 8 -0.1112 -5.2910 -2.0321 27 1 -0.4849 0.8402 -0.0004 28 1 6.1434 -6.6705 0.6597 29 1 6.7891 -9.0680 0.6365 30 1 5.1285 -10.7594 -0.0225 31 1 2.2235 -7.8598 -0.6284 32 1 1.3926 -7.0179 0.4404 33 1 0.4173 -5.5430 0.6446 34 1 1.4578 -8.1093 -1.9643 35 1 0.1729 -7.5861 -4.2818 36 1 -0.9789 -5.2482 -4.0100 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006532459.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:39 Heat of formation + Delta-G solvation = 142.599307 kcal Electronic energy + Delta-G solvation = -24625.103090 eV Core-core repulsion = 21011.405800 eV Total energy + Delta-G solvation = -3613.697290 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.67943 -42.02008 -40.01328 -35.36452 -33.16292 -32.99142 -32.71464 -31.84116 -30.39380 -29.04107 -26.40159 -25.76210 -24.09289 -23.93724 -21.84666 -21.78934 -20.90748 -20.46631 -18.30986 -17.59070 -17.40054 -16.86327 -16.27940 -16.02095 -15.64758 -15.38317 -15.01839 -14.96005 -14.39585 -14.08594 -13.90283 -13.43068 -13.20326 -13.06961 -12.76857 -12.68368 -12.21455 -11.66754 -11.49646 -11.20744 -11.10104 -10.82472 -10.48845 -10.25704 -10.11038 -9.95532 -9.91322 -9.76828 -9.56346 -9.35861 -8.91682 -8.59487 -8.55041 -6.81872 -6.53014 -4.26994 0.63728 1.10238 1.55920 2.29773 2.35048 2.60338 3.00956 3.14660 3.20317 3.23570 3.32353 3.38543 3.80669 3.96145 4.15530 4.37774 4.41669 4.63478 4.68544 4.77366 4.88855 4.91528 4.95184 4.97330 5.07910 5.20724 5.27887 5.46266 5.71757 5.77135 5.83473 5.95556 6.04059 6.10806 6.27216 6.43142 6.47870 6.54833 7.11438 7.15523 7.51629 7.75074 8.31779 8.99164 9.27339 10.54891 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013774 B = 0.004318 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.284014 B = 6482.692173 C = 8143.709915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.077 3.923 3 Si 0.932 3.068 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.538 4.538 8 H 0.107 0.893 9 S 0.161 5.839 10 C 0.181 3.819 11 N -0.303 5.303 12 N -0.260 5.260 13 C 0.167 3.833 14 C -0.034 4.034 15 C -0.045 4.045 16 C -0.164 4.164 17 C 0.091 3.909 18 N -0.476 5.476 19 C 0.075 3.925 20 N -0.474 5.474 21 C 0.182 3.818 22 C -0.042 4.042 23 C -0.197 4.197 24 C -0.221 4.221 25 C -0.019 4.019 26 O -0.147 6.147 27 H 0.274 0.726 28 H 0.147 0.853 29 H 0.140 0.860 30 H 0.157 0.843 31 H 0.168 0.832 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.553 -17.616 -1.856 17.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.132 4.132 3 Si 0.757 3.243 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.686 4.686 8 H 0.125 0.875 9 S 0.396 5.604 10 C -0.187 4.187 11 N -0.149 5.149 12 N -0.101 5.101 13 C -0.100 4.100 14 C -0.039 4.039 15 C -0.073 4.073 16 C -0.184 4.184 17 C -0.067 4.067 18 N -0.184 5.184 19 C -0.084 4.084 20 N -0.172 5.172 21 C 0.059 3.941 22 C -0.094 4.094 23 C -0.217 4.217 24 C -0.240 4.240 25 C -0.089 4.089 26 O -0.041 6.041 27 H 0.084 0.916 28 H 0.165 0.835 29 H 0.158 0.842 30 H 0.175 0.825 31 H 0.184 0.816 32 H 0.144 0.856 33 H 0.136 0.864 34 H 0.173 0.827 35 H 0.167 0.833 36 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.721 -17.062 -1.942 17.187 hybrid contribution 1.254 0.915 -0.072 1.554 sum 1.976 -16.147 -2.014 16.391 Atomic orbital electron populations 1.69964 1.06066 1.28466 1.46525 1.25072 0.95192 0.99673 0.93313 0.85878 0.80205 0.80254 0.77979 1.18783 1.20302 1.20286 1.23313 0.97378 0.89230 1.58693 0.87548 1.83589 0.97007 0.95218 1.84608 1.28575 1.02416 0.85317 1.02412 1.74829 0.98888 1.18113 1.23097 1.74232 1.26606 0.94311 1.14999 1.22271 0.81057 0.94595 1.12042 1.18516 0.95394 0.88492 1.01504 1.21686 0.94756 0.96791 0.94076 1.22110 1.01446 0.93251 1.01610 1.22844 0.88743 1.00214 0.94918 1.67674 1.18178 1.18951 1.13555 1.23580 1.00459 0.87722 0.96635 1.46306 1.05923 1.05869 1.59143 1.20261 0.85469 0.97841 0.90519 1.22321 1.00118 0.90726 0.96219 1.21864 1.04742 1.00709 0.94372 1.21781 1.03800 0.98604 0.99840 1.24215 1.02877 0.95750 0.86020 1.84204 1.53697 1.42044 1.24165 0.91582 0.83550 0.84205 0.82525 0.81587 0.85570 0.86372 0.82665 0.83289 0.77847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.06 13.22 55.48 0.73 -23.33 16 2 C 0.08 2.07 5.49 -17.48 -0.10 1.98 16 3 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 4 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -14.90 9.37 30.88 0.29 -14.62 16 8 H 0.11 3.06 6.92 -52.49 -0.36 2.70 16 9 S 0.16 3.97 21.54 -107.50 -2.32 1.66 16 10 C 0.18 4.20 8.06 -87.92 -0.71 3.49 16 11 N -0.30 -7.57 11.03 30.77 0.34 -7.23 16 12 N -0.26 -5.78 12.08 32.57 0.39 -5.38 16 13 C 0.17 3.14 7.72 -153.81 -1.19 1.95 16 14 C -0.03 -0.51 5.88 -104.82 -0.62 -1.13 16 15 C -0.05 -0.57 9.85 -38.87 -0.38 -0.95 16 16 C -0.16 -1.58 10.10 -39.50 -0.40 -1.98 16 17 C 0.09 0.90 11.17 -17.47 -0.20 0.70 16 18 N -0.48 -5.84 10.35 -12.90 -0.13 -5.97 16 19 C 0.07 0.99 9.38 -17.11 -0.16 0.83 16 20 N -0.47 -8.97 2.82 -115.31 -0.32 -9.29 16 21 C 0.18 2.66 5.77 -5.19 -0.03 2.63 16 22 C -0.04 -0.62 6.88 -35.63 -0.25 -0.87 16 23 C -0.20 -2.60 9.81 -39.70 -0.39 -2.99 16 24 C -0.22 -2.70 10.91 -39.71 -0.43 -3.13 16 25 C -0.02 -0.25 12.09 29.41 0.36 0.11 16 26 O -0.15 -2.40 10.65 5.68 0.06 -2.34 16 27 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.15 1.82 8.03 -52.48 -0.42 1.40 16 29 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 30 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 31 H 0.17 2.07 1.61 -52.49 -0.08 1.98 16 32 H 0.13 1.44 5.48 -51.93 -0.28 1.16 16 33 H 0.12 1.63 8.06 -51.93 -0.42 1.21 16 34 H 0.16 1.83 5.72 -52.49 -0.30 1.53 16 35 H 0.15 1.42 8.06 -52.48 -0.42 1.00 16 36 H 0.20 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 331.39 15.07 4.99 4.99 Total: -1.00 -33.50 331.39 -8.17 -41.67 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -2.70 Total: 3.16 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -4.20 Total: -13.98 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 1.01 Total: -51.21 kcal Atomic # 8 Polarization: -2.40 SS G_CDS: 0.06 Total: -2.34 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -2.32 Total: 1.66 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.50 -8.17 -41.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006532459.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.274 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds