Wall clock time and date at job start Tue Mar 31 2020 15:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31654 * 1 3 3 Si 1.86792 * 120.00306 * 2 1 4 4 H 1.48501 * 109.47458 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47054 * 299.99309 * 3 2 1 6 6 H 1.48503 * 109.47625 * 59.99601 * 3 2 1 7 7 C 1.38637 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00362 * 180.02562 * 7 2 1 9 9 S 1.76207 * 119.99766 * 359.73468 * 7 2 1 10 10 C 1.76209 * 99.99718 * 179.97438 * 9 7 2 11 11 N 1.31566 * 126.38978 * 0.02562 * 10 9 7 12 12 N 1.28523 * 110.02704 * 179.97438 * 11 10 9 13 13 C 1.31501 * 109.94619 * 359.97438 * 12 11 10 14 14 C 1.47787 * 126.44165 * 180.02562 * 13 12 11 15 15 C 1.40039 * 120.56081 * 17.84958 * 14 13 12 16 16 C 1.38347 * 118.28423 * 179.97438 * 15 14 13 17 17 C 1.38363 * 119.31075 * 0.02562 * 16 15 14 18 18 N 1.31918 * 121.08860 * 0.02562 * 17 16 15 19 19 C 1.31697 * 121.87740 * 359.66270 * 18 17 16 20 20 N 1.36733 * 126.38665 * 179.71145 * 10 9 7 21 21 C 1.46504 * 127.15759 * 0.02562 * 20 10 9 22 22 C 1.50694 * 109.47345 * 83.33089 * 21 20 10 23 23 C 1.34519 * 125.79123 * 96.69805 * 22 21 20 24 24 C 1.41376 * 106.83860 * 179.88939 * 23 22 21 25 25 C 1.34507 * 106.84824 * 0.37248 * 24 23 22 26 26 O 1.34306 * 125.78952 * 277.00804 * 22 21 20 27 27 H 0.97007 * 119.99219 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.85736 * 0.02585 * 15 14 13 29 29 H 1.07999 * 120.34145 * 180.02562 * 16 15 14 30 30 H 1.07995 * 119.45106 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.72067 * 180.33824 * 19 18 17 32 32 H 1.08995 * 109.47145 * 203.33556 * 21 20 10 33 33 H 1.09002 * 109.46628 * 323.33181 * 21 20 10 34 34 H 1.07995 * 126.57675 * 0.02562 * 23 22 21 35 35 H 1.08008 * 126.57498 * 180.12194 * 24 23 22 36 36 H 1.07996 * 125.79470 * 179.79316 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2506 1.6176 0.0000 4 1 3.7106 1.3463 0.0006 5 1 1.8920 2.3963 -1.2126 6 1 1.8919 2.3965 1.2124 7 6 2.0097 -1.2007 0.0005 8 1 3.0897 -1.2008 0.0010 9 16 1.1285 -2.7266 0.0083 10 6 2.4783 -3.8593 0.0052 11 7 3.7570 -3.5497 -0.0007 12 7 4.4689 -4.6198 -0.0007 13 6 3.6883 -5.6780 0.0057 14 6 4.1238 -7.0902 0.0084 15 6 5.4320 -7.4312 0.3738 16 6 5.7891 -8.7677 0.3603 17 6 4.8520 -9.7155 -0.0108 18 7 3.6266 -9.3650 -0.3513 19 6 3.2369 -8.1071 -0.3484 20 7 2.3921 -5.2239 0.0146 21 6 1.1711 -6.0333 0.0286 22 6 0.6511 -6.1824 -1.3779 23 6 0.8765 -7.2284 -2.1933 24 6 0.2039 -6.9545 -3.4062 25 6 -0.3855 -5.7539 -3.2627 26 8 -0.1112 -5.2910 -2.0321 27 1 -0.4849 0.8402 -0.0004 28 1 6.1434 -6.6705 0.6597 29 1 6.7891 -9.0680 0.6365 30 1 5.1285 -10.7594 -0.0225 31 1 2.2235 -7.8598 -0.6284 32 1 1.3926 -7.0179 0.4404 33 1 0.4173 -5.5430 0.6446 34 1 1.4578 -8.1093 -1.9643 35 1 0.1729 -7.5861 -4.2818 36 1 -0.9789 -5.2482 -4.0100 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006532459.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:38 Heat of formation + Delta-G solvation = 122.292729 kcal Electronic energy + Delta-G solvation = -24625.983650 eV Core-core repulsion = 21011.405800 eV Total energy + Delta-G solvation = -3614.577849 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.95741 -43.41356 -40.99786 -36.75608 -34.77157 -34.28448 -34.07236 -32.84542 -31.61452 -30.50399 -27.83689 -27.56336 -25.23087 -25.01398 -23.35766 -22.84860 -22.19457 -21.64048 -20.05778 -18.89636 -18.57004 -17.98946 -17.45142 -17.24817 -16.99824 -16.98079 -16.66849 -16.37726 -15.59668 -15.16089 -14.92441 -14.87441 -14.47531 -14.16403 -13.75364 -13.65923 -13.49246 -13.25588 -13.06052 -13.01954 -12.64706 -12.53448 -12.05461 -11.90185 -11.74293 -11.48745 -11.21066 -10.95242 -10.89422 -10.70711 -10.55632 -9.96860 -9.63940 -8.69508 -8.54866 -6.33381 -0.43829 0.16250 0.36906 0.73809 0.86661 1.35378 1.36722 1.49782 1.53097 1.79442 1.83209 1.98850 2.11561 2.76903 2.85950 2.96082 3.04489 3.26252 3.36676 3.56506 3.73014 3.80455 3.94679 3.99607 4.03827 4.18073 4.32815 4.38819 4.58782 4.65153 4.80517 4.83959 4.89491 5.03861 5.09861 5.16840 5.44194 5.49535 5.57806 5.68948 6.11164 6.19076 6.82225 6.92947 7.60596 8.54514 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013774 B = 0.004318 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.284014 B = 6482.692173 C = 8143.709915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.036 3.964 3 Si 0.994 3.006 4 H -0.273 1.273 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.565 4.565 8 H 0.085 0.915 9 S 0.141 5.859 10 C 0.167 3.833 11 N -0.343 5.343 12 N -0.304 5.304 13 C 0.201 3.799 14 C -0.073 4.073 15 C -0.049 4.049 16 C -0.149 4.149 17 C 0.106 3.894 18 N -0.487 5.487 19 C 0.084 3.916 20 N -0.466 5.466 21 C 0.175 3.825 22 C -0.071 4.071 23 C -0.186 4.186 24 C -0.222 4.222 25 C -0.028 4.028 26 O -0.181 6.181 27 H 0.281 0.719 28 H 0.142 0.858 29 H 0.181 0.819 30 H 0.201 0.799 31 H 0.170 0.830 32 H 0.159 0.841 33 H 0.120 0.880 34 H 0.172 0.828 35 H 0.179 0.821 36 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.489 -20.916 -2.412 21.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.171 4.171 3 Si 0.815 3.185 4 H -0.198 1.198 5 H -0.189 1.189 6 H -0.188 1.188 7 C -0.713 4.713 8 H 0.103 0.897 9 S 0.374 5.626 10 C -0.205 4.205 11 N -0.188 5.188 12 N -0.144 5.144 13 C -0.067 4.067 14 C -0.078 4.078 15 C -0.077 4.077 16 C -0.168 4.168 17 C -0.051 4.051 18 N -0.195 5.195 19 C -0.075 4.075 20 N -0.162 5.162 21 C 0.054 3.946 22 C -0.122 4.122 23 C -0.206 4.206 24 C -0.241 4.241 25 C -0.097 4.097 26 O -0.076 6.076 27 H 0.091 0.909 28 H 0.160 0.840 29 H 0.199 0.801 30 H 0.217 0.783 31 H 0.186 0.814 32 H 0.176 0.824 33 H 0.138 0.862 34 H 0.189 0.811 35 H 0.197 0.803 36 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 1.664 -20.419 -2.498 20.639 hybrid contribution 1.101 1.501 0.066 1.863 sum 2.765 -18.918 -2.432 19.273 Atomic orbital electron populations 1.70018 1.07111 1.29611 1.46938 1.25893 0.96055 1.02560 0.92610 0.84974 0.78206 0.76389 0.78892 1.19765 1.18909 1.18783 1.23394 0.96756 0.91290 1.59889 0.89711 1.83236 0.97795 0.94596 1.87018 1.28191 1.01466 0.86859 1.04001 1.74695 1.00029 1.20148 1.23941 1.74144 1.27190 0.94626 1.18423 1.23062 0.80576 0.95859 1.07201 1.18607 0.97213 0.86421 1.05597 1.21870 0.93670 0.98517 0.93642 1.22522 1.03254 0.91359 0.99712 1.23658 0.87555 1.02282 0.91623 1.67798 1.19613 1.17829 1.14291 1.23553 1.00233 0.87780 0.95886 1.46568 1.07412 1.04755 1.57473 1.20661 0.83955 0.98627 0.91365 1.22354 1.01657 0.91559 0.96586 1.22132 1.03834 1.00360 0.94271 1.22177 1.02912 0.98601 1.00361 1.24971 1.02915 0.96373 0.85396 1.84180 1.54535 1.43268 1.25660 0.90924 0.84029 0.80145 0.78263 0.81358 0.82352 0.86229 0.81120 0.80320 0.75046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.84 13.22 21.62 0.29 -50.56 16 2 C 0.04 1.97 5.49 84.81 0.47 2.44 16 3 Si 0.99 44.24 29.55 68.60 2.03 46.27 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 5 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 7 C -0.56 -33.02 9.37 67.92 0.64 -32.38 16 8 H 0.08 5.20 6.92 -2.91 -0.02 5.18 16 9 S 0.14 7.36 21.54 -56.49 -1.22 6.14 16 10 C 0.17 8.15 8.06 179.40 1.45 9.59 16 11 N -0.34 -18.14 11.03 -56.57 -0.62 -18.76 16 12 N -0.30 -14.08 12.08 -50.86 -0.61 -14.70 16 13 C 0.20 7.72 7.72 136.20 1.05 8.77 16 14 C -0.07 -2.10 5.88 -19.99 -0.12 -2.22 16 15 C -0.05 -1.14 9.85 22.73 0.22 -0.92 16 16 C -0.15 -2.18 10.10 22.33 0.23 -1.96 16 17 C 0.11 1.54 11.17 84.71 0.95 2.49 16 18 N -0.49 -10.01 10.35 -194.72 -2.01 -12.03 16 19 C 0.08 2.01 9.38 85.03 0.80 2.81 16 20 N -0.47 -18.15 2.82 -518.73 -1.46 -19.61 16 21 C 0.17 5.16 5.77 85.63 0.49 5.65 16 22 C -0.07 -2.10 6.88 24.83 0.17 -1.93 16 23 C -0.19 -4.63 9.81 22.19 0.22 -4.41 16 24 C -0.22 -4.96 10.91 22.19 0.24 -4.72 16 25 C -0.03 -0.71 12.09 66.97 0.81 0.10 16 26 O -0.18 -6.01 10.65 -2.57 -0.03 -6.04 16 27 H 0.28 14.58 8.31 -92.70 -0.77 13.81 16 28 H 0.14 3.39 8.03 -2.91 -0.02 3.37 16 29 H 0.18 1.22 8.06 -2.91 -0.02 1.20 16 30 H 0.20 1.23 8.06 -2.91 -0.02 1.21 16 31 H 0.17 3.84 1.61 -2.91 0.00 3.84 16 32 H 0.16 3.48 5.48 -2.39 -0.01 3.47 16 33 H 0.12 3.45 8.06 -2.39 -0.02 3.43 16 34 H 0.17 3.60 5.72 -2.91 -0.02 3.58 16 35 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.23 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -77.71 331.39 5.12 -72.59 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 1.16 Total: 13.38 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 7.61 Total: -16.68 kcal Atomic # 7 Polarization: -111.23 SS G_CDS: -4.43 Total: -115.66 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.03 Total: -6.04 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 7.36 SS G_CDS: -1.22 Total: 6.14 kcal Total: -77.71 5.12 -72.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006532459.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.878 kcal (2) G-P(sol) polarization free energy of solvation -77.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds