Wall clock time and date at job start Tue Mar 31 2020 14:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39659 * 120.14717 * 196.84164 * 3 2 1 5 5 C 1.37924 * 119.84409 * 179.97438 * 4 3 2 6 6 C 1.38381 * 120.15428 * 359.74843 * 5 4 3 7 7 C 1.38346 * 120.30398 * 0.50448 * 6 5 4 8 8 S 1.76193 * 119.92587 * 179.76609 * 7 6 5 9 9 O 1.42102 * 106.40115 * 17.74040 * 8 7 6 10 10 O 1.42104 * 106.40188 * 150.66125 * 8 7 6 11 11 N 1.65598 * 107.22059 * 264.20472 * 8 7 6 12 12 C 1.38857 * 120.00371 * 62.85749 * 11 8 7 13 13 C 1.39561 * 119.84393 * 253.80182 * 12 11 8 14 14 C 1.36337 * 120.16069 * 179.71687 * 13 12 11 15 15 C 1.40885 * 119.83672 * 0.55391 * 14 13 12 16 16 C 1.41135 * 120.15909 * 179.70201 * 15 14 13 17 17 H 1.07998 * 120.00148 * 205.14080 * 16 15 14 18 18 C 1.39867 * 119.99852 * 25.13950 * 16 15 14 19 19 N 1.30904 * 120.00254 * 15.24234 * 18 16 15 20 20 Si 1.86804 * 119.99895 * 195.24381 * 18 16 15 21 21 H 1.48495 * 109.47050 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47032 * 119.99657 * 20 18 16 23 23 H 1.48497 * 109.46981 * 239.99702 * 20 18 16 24 24 C 1.40891 * 119.68886 * 359.71402 * 15 14 13 25 25 C 1.36342 * 119.83123 * 0.02562 * 24 15 14 26 26 C 1.37975 * 120.15036 * 359.49789 * 7 6 5 27 27 H 1.08001 * 120.07157 * 359.97438 * 4 3 2 28 28 H 1.07997 * 119.92055 * 180.02562 * 5 4 3 29 29 H 1.07998 * 119.85021 * 180.27635 * 6 5 4 30 30 H 0.97002 * 119.99440 * 242.86003 * 11 8 7 31 31 H 1.07999 * 119.91888 * 359.97140 * 13 12 11 32 32 H 1.08007 * 120.08557 * 180.27169 * 14 13 12 33 33 H 0.97001 * 120.00364 * 180.02562 * 19 18 16 34 34 H 1.07990 * 120.08262 * 179.97438 * 24 15 14 35 35 H 1.08004 * 119.91101 * 179.97438 * 25 24 15 36 36 H 1.07999 * 120.07455 * 180.23020 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 1.1568 0.3499 5 6 4.6481 1.1503 0.3483 6 6 5.3374 0.0002 0.0061 7 6 4.6495 -1.1471 -0.3466 8 16 5.5373 -2.6041 -0.7865 9 8 6.8591 -2.4325 -0.2940 10 8 4.7101 -3.7020 -0.4265 11 7 5.6531 -2.6276 -2.4382 12 6 6.3443 -1.6216 -3.1002 13 6 5.6410 -0.6435 -3.8049 14 6 6.3128 0.3505 -4.4524 15 6 7.7209 0.3822 -4.4187 16 6 8.4235 1.4045 -5.0918 17 1 9.4390 1.2368 -5.4189 18 6 7.8045 2.6349 -5.3354 19 7 6.7077 2.9538 -4.6960 20 14 8.5431 3.8231 -6.5733 21 1 9.7734 3.2297 -7.1558 22 1 7.5602 4.0849 -7.6553 23 1 8.8822 5.0989 -5.8932 24 6 8.4245 -0.6117 -3.7100 25 6 7.7392 -1.5967 -3.0627 26 6 3.2698 -1.1546 -0.3493 27 1 2.7321 2.0539 0.6211 28 1 5.1914 2.0436 0.6191 29 1 6.4174 -0.0007 0.0108 30 1 5.2381 -3.3443 -2.9433 31 1 4.5617 -0.6719 -3.8339 32 1 5.7671 1.1093 -4.9937 33 1 6.2782 3.8070 -4.8652 34 1 9.5038 -0.5938 -3.6803 35 1 8.2772 -2.3595 -2.5194 36 1 2.7340 -2.0520 -0.6212 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029967120.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:53 Heat of formation + Delta-G solvation = 1.541965 kcal Electronic energy + Delta-G solvation = -24552.060875 eV Core-core repulsion = 20899.954128 eV Total energy + Delta-G solvation = -3652.106746 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.49905 -38.09769 -36.88361 -36.53397 -35.55239 -34.88377 -32.92991 -31.63928 -31.43317 -29.69025 -28.84006 -24.86515 -24.15924 -23.35663 -21.25016 -20.91141 -20.03578 -18.65826 -17.53335 -17.28171 -16.82312 -16.56491 -15.94720 -15.75338 -15.42754 -14.59279 -14.21906 -14.16726 -14.08106 -13.74999 -13.30571 -12.97532 -12.92094 -12.62925 -12.48730 -12.31845 -12.19846 -11.82942 -11.78328 -11.72893 -11.57286 -11.44361 -11.28950 -10.96643 -10.87854 -10.72474 -10.02772 -9.87719 -9.55937 -9.37682 -9.13413 -9.02833 -7.74963 -7.46307 -6.98837 -4.57372 0.46050 0.69285 0.89768 2.48323 2.50968 2.69063 2.94586 2.96718 2.99413 3.01655 3.35136 3.59382 3.68581 3.76046 4.02662 4.37950 4.55131 4.66811 4.80214 5.00133 5.28536 5.41463 5.45624 5.63792 5.86108 5.98274 6.10132 6.11553 6.19396 6.28402 6.55423 6.80387 6.85498 6.98718 7.13022 7.26936 7.30414 7.42214 7.82892 7.86982 7.93264 8.07621 8.41355 8.65541 8.75526 9.92855 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012332 B = 0.004346 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.962007 B = 6440.922076 C = 7902.078397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.260 3.740 3 C -0.057 4.057 4 C -0.021 4.021 5 C -0.134 4.134 6 C 0.025 3.975 7 C -0.666 4.666 8 S 2.674 3.326 9 O -0.951 6.951 10 O -0.977 6.977 11 N -1.027 6.027 12 C -0.040 4.040 13 C -0.083 4.083 14 C -0.165 4.165 15 C 0.119 3.881 16 C -0.444 4.444 17 H 0.083 0.917 18 C 0.074 3.926 19 N -0.782 5.782 20 Si 0.911 3.089 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.273 1.273 24 C -0.223 4.223 25 C -0.062 4.062 26 C 0.026 3.974 27 H 0.138 0.862 28 H 0.144 0.856 29 H 0.151 0.849 30 H 0.408 0.592 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.283 0.717 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.891 -1.507 5.589 6.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.095 5.095 2 C -0.055 4.055 3 C -0.061 4.061 4 C -0.042 4.042 5 C -0.153 4.153 6 C 0.005 3.995 7 C -0.751 4.751 8 S 2.766 3.234 9 O -0.941 6.941 10 O -0.968 6.968 11 N -0.782 5.782 12 C -0.136 4.136 13 C -0.105 4.105 14 C -0.185 4.185 15 C 0.116 3.884 16 C -0.473 4.473 17 H 0.101 0.899 18 C -0.146 4.146 19 N -0.407 5.407 20 Si 0.735 3.265 21 H -0.182 1.182 22 H -0.196 1.196 23 H -0.198 1.198 24 C -0.244 4.244 25 C -0.083 4.083 26 C 0.005 3.995 27 H 0.156 0.844 28 H 0.162 0.838 29 H 0.169 0.831 30 H 0.245 0.755 31 H 0.109 0.891 32 H 0.141 0.859 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.473 -1.836 6.376 8.002 hybrid contribution 0.032 1.122 -0.903 1.441 sum -4.441 -0.714 5.473 7.084 Atomic orbital electron populations 1.81246 1.11903 1.07314 1.09025 1.25597 0.92490 0.93858 0.93579 1.15971 0.84434 0.96356 1.09374 1.21438 0.94633 0.96124 0.91960 1.21273 0.93596 0.99078 1.01372 1.21300 1.01368 0.90239 0.86546 1.31096 1.05419 1.21625 1.16926 1.03049 0.73958 0.73017 0.73348 1.93572 1.35482 1.86010 1.79013 1.93542 1.69860 1.50727 1.82630 1.52158 1.67558 1.34498 1.23990 1.16600 0.89872 0.95263 1.11858 1.20625 0.97476 0.94416 0.97950 1.21019 0.94627 0.98962 1.03920 1.17764 0.92135 0.90750 0.87797 1.19744 1.00544 0.96394 1.30644 0.89922 1.25991 0.94320 0.99235 0.95026 1.69836 1.16036 1.21959 1.32841 0.86203 0.80293 0.79569 0.80444 1.18203 1.19573 1.19792 1.20679 0.98183 1.00061 1.05448 1.20611 0.92571 0.97543 0.97580 1.20834 0.92197 0.96715 0.89782 0.84431 0.83835 0.83086 0.75459 0.89090 0.85914 0.90584 0.88349 0.88118 0.83779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.16 18.54 41.84 0.78 -5.38 16 2 C 0.26 3.36 15.33 -22.47 -0.34 3.01 16 3 C -0.06 -0.69 5.73 -106.93 -0.61 -1.30 16 4 C -0.02 -0.22 9.76 -39.17 -0.38 -0.60 16 5 C -0.13 -1.52 10.03 -39.64 -0.40 -1.92 16 6 C 0.03 0.34 9.52 -39.49 -0.38 -0.03 16 7 C -0.67 -9.42 5.85 -39.64 -0.23 -9.65 16 8 S 2.67 41.78 5.70 -107.50 -0.61 41.16 16 9 O -0.95 -17.22 16.07 -57.17 -0.92 -18.14 16 10 O -0.98 -16.31 17.43 -57.17 -1.00 -17.31 16 11 N -1.03 -16.09 5.65 32.51 0.18 -15.91 16 12 C -0.04 -0.75 5.80 -83.69 -0.49 -1.24 16 13 C -0.08 -1.67 9.90 -39.77 -0.39 -2.06 16 14 C -0.16 -3.74 8.63 -39.27 -0.34 -4.08 16 15 C 0.12 2.80 5.58 -106.79 -0.60 2.21 16 16 C -0.44 -10.49 9.04 -37.87 -0.34 -10.83 16 17 H 0.08 1.88 7.89 -52.49 -0.41 1.47 16 18 C 0.07 1.64 5.19 -17.34 -0.09 1.55 16 19 N -0.78 -17.90 10.83 55.54 0.60 -17.30 16 20 Si 0.91 16.80 29.59 -169.99 -5.03 11.77 16 21 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 22 H -0.27 -4.96 7.11 56.52 0.40 -4.55 16 23 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 24 C -0.22 -4.89 9.74 -39.26 -0.38 -5.28 16 25 C -0.06 -1.26 9.18 -39.77 -0.37 -1.62 16 26 C 0.03 0.34 9.23 -39.17 -0.36 -0.02 16 27 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.15 2.08 7.49 -52.49 -0.39 1.69 16 30 H 0.41 5.36 8.95 -34.46 -0.31 5.05 16 31 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.12 2.91 6.09 -52.48 -0.32 2.59 16 33 H 0.28 5.88 8.30 -40.82 -0.34 5.54 16 34 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 35 H 0.10 1.94 7.84 -52.48 -0.41 1.53 16 36 H 0.14 1.65 7.74 -52.49 -0.41 1.24 16 LS Contribution 340.16 15.07 5.13 5.13 Total: -1.00 -28.22 340.16 -9.65 -37.86 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -3.08 Total: 9.97 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: -5.70 Total: -31.87 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 1.56 Total: -38.59 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -1.91 Total: -35.44 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: -5.03 Total: 11.77 kcal Atomic # 16 Polarization: 41.78 SS G_CDS: -0.61 Total: 41.16 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.22 -9.65 -37.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029967120.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.406 kcal (2) G-P(sol) polarization free energy of solvation -28.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds