Wall clock time and date at job start Tue Mar 31 2020 14:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39659 * 120.14717 * 196.84164 * 3 2 1 5 5 C 1.37924 * 119.84409 * 179.97438 * 4 3 2 6 6 C 1.38381 * 120.15428 * 359.74843 * 5 4 3 7 7 C 1.38346 * 120.30398 * 0.50448 * 6 5 4 8 8 S 1.76193 * 119.92587 * 179.76609 * 7 6 5 9 9 O 1.42102 * 106.40115 * 17.74040 * 8 7 6 10 10 O 1.42104 * 106.40188 * 150.66125 * 8 7 6 11 11 N 1.65598 * 107.22059 * 264.20472 * 8 7 6 12 12 C 1.38857 * 120.00371 * 62.85749 * 11 8 7 13 13 C 1.39561 * 119.84393 * 253.80182 * 12 11 8 14 14 C 1.36337 * 120.16069 * 179.71687 * 13 12 11 15 15 C 1.40885 * 119.83672 * 0.55391 * 14 13 12 16 16 C 1.41135 * 120.15909 * 179.70201 * 15 14 13 17 17 H 1.07998 * 120.00148 * 205.14080 * 16 15 14 18 18 C 1.39867 * 119.99852 * 25.13950 * 16 15 14 19 19 N 1.30904 * 120.00254 * 15.24234 * 18 16 15 20 20 Si 1.86804 * 119.99895 * 195.24381 * 18 16 15 21 21 H 1.48495 * 109.47050 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47032 * 119.99657 * 20 18 16 23 23 H 1.48497 * 109.46981 * 239.99702 * 20 18 16 24 24 C 1.40891 * 119.68886 * 359.71402 * 15 14 13 25 25 C 1.36342 * 119.83123 * 0.02562 * 24 15 14 26 26 C 1.37975 * 120.15036 * 359.49789 * 7 6 5 27 27 H 1.08001 * 120.07157 * 359.97438 * 4 3 2 28 28 H 1.07997 * 119.92055 * 180.02562 * 5 4 3 29 29 H 1.07998 * 119.85021 * 180.27635 * 6 5 4 30 30 H 0.97002 * 119.99440 * 242.86003 * 11 8 7 31 31 H 1.07999 * 119.91888 * 359.97140 * 13 12 11 32 32 H 1.08007 * 120.08557 * 180.27169 * 14 13 12 33 33 H 0.97001 * 120.00364 * 180.02562 * 19 18 16 34 34 H 1.07990 * 120.08262 * 179.97438 * 24 15 14 35 35 H 1.08004 * 119.91101 * 179.97438 * 25 24 15 36 36 H 1.07999 * 120.07455 * 180.23020 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 1.1568 0.3499 5 6 4.6481 1.1503 0.3483 6 6 5.3374 0.0002 0.0061 7 6 4.6495 -1.1471 -0.3466 8 16 5.5373 -2.6041 -0.7865 9 8 6.8591 -2.4325 -0.2940 10 8 4.7101 -3.7020 -0.4265 11 7 5.6531 -2.6276 -2.4382 12 6 6.3443 -1.6216 -3.1002 13 6 5.6410 -0.6435 -3.8049 14 6 6.3128 0.3505 -4.4524 15 6 7.7209 0.3822 -4.4187 16 6 8.4235 1.4045 -5.0918 17 1 9.4390 1.2368 -5.4189 18 6 7.8045 2.6349 -5.3354 19 7 6.7077 2.9538 -4.6960 20 14 8.5431 3.8231 -6.5733 21 1 9.7734 3.2297 -7.1558 22 1 7.5602 4.0849 -7.6553 23 1 8.8822 5.0989 -5.8932 24 6 8.4245 -0.6117 -3.7100 25 6 7.7392 -1.5967 -3.0627 26 6 3.2698 -1.1546 -0.3493 27 1 2.7321 2.0539 0.6211 28 1 5.1914 2.0436 0.6191 29 1 6.4174 -0.0007 0.0108 30 1 5.2381 -3.3443 -2.9433 31 1 4.5617 -0.6719 -3.8339 32 1 5.7671 1.1093 -4.9937 33 1 6.2782 3.8070 -4.8652 34 1 9.5038 -0.5938 -3.6803 35 1 8.2772 -2.3595 -2.5194 36 1 2.7340 -2.0520 -0.6212 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000029967120.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:52 Heat of formation + Delta-G solvation = -14.292356 kcal Electronic energy + Delta-G solvation = -24552.747503 eV Core-core repulsion = 20899.954128 eV Total energy + Delta-G solvation = -3652.793374 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.48302 -39.72012 -38.24248 -37.60398 -36.91488 -36.44796 -34.51388 -32.65202 -32.40173 -31.36038 -30.48030 -26.51550 -25.16742 -24.36188 -22.91118 -22.53086 -21.14071 -19.92801 -19.21654 -18.62545 -18.20508 -17.63043 -17.12655 -17.00527 -16.82152 -15.86561 -15.69384 -15.38717 -15.23119 -15.08784 -14.53250 -14.33946 -14.03252 -14.01042 -13.83028 -13.62831 -13.39264 -13.28340 -13.18468 -13.14086 -13.06138 -12.81654 -12.61819 -12.53414 -12.34751 -11.93421 -11.60224 -11.48626 -11.01355 -10.60228 -10.47162 -10.12677 -9.42632 -9.13904 -8.62970 -6.31367 -0.66509 -0.42601 -0.11670 0.89561 1.24544 1.44857 1.47247 1.52420 1.57818 1.67771 2.10054 2.23688 2.54972 2.66116 2.72405 2.81946 3.42495 3.70050 3.74512 3.93485 3.98451 4.29344 4.42287 4.51196 4.58630 4.70741 4.74318 4.87962 5.05489 5.13481 5.16391 5.18965 5.34445 5.44888 5.61027 5.72536 5.85019 6.12941 6.19771 6.29496 6.32840 6.44945 6.71775 6.94832 7.06220 8.31316 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012332 B = 0.004346 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.962007 B = 6440.922076 C = 7902.078397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.281 3.719 3 C -0.059 4.059 4 C -0.005 4.005 5 C -0.133 4.133 6 C 0.007 3.993 7 C -0.676 4.676 8 S 2.697 3.303 9 O -0.978 6.978 10 O -0.985 6.985 11 N -1.027 6.027 12 C -0.016 4.016 13 C -0.079 4.079 14 C -0.182 4.182 15 C 0.093 3.907 16 C -0.483 4.483 17 H 0.078 0.922 18 C 0.040 3.960 19 N -0.810 5.810 20 Si 0.977 3.023 21 H -0.260 1.260 22 H -0.266 1.266 23 H -0.267 1.267 24 C -0.236 4.236 25 C -0.070 4.070 26 C 0.023 3.977 27 H 0.171 0.829 28 H 0.170 0.830 29 H 0.143 0.857 30 H 0.422 0.578 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.290 0.710 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.903 -0.923 6.173 7.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.034 4.034 3 C -0.063 4.063 4 C -0.026 4.026 5 C -0.151 4.151 6 C -0.013 4.013 7 C -0.764 4.764 8 S 2.790 3.210 9 O -0.968 6.968 10 O -0.975 6.975 11 N -0.783 5.783 12 C -0.113 4.113 13 C -0.101 4.101 14 C -0.202 4.202 15 C 0.090 3.910 16 C -0.512 4.512 17 H 0.096 0.904 18 C -0.176 4.176 19 N -0.435 5.435 20 Si 0.798 3.202 21 H -0.184 1.184 22 H -0.191 1.191 23 H -0.191 1.191 24 C -0.256 4.256 25 C -0.091 4.091 26 C 0.001 3.999 27 H 0.189 0.811 28 H 0.187 0.813 29 H 0.161 0.839 30 H 0.261 0.739 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.465 -1.291 6.934 8.923 hybrid contribution 0.246 0.821 -0.915 1.254 sum -5.219 -0.470 6.019 7.980 Atomic orbital electron populations 1.81279 1.12817 1.08353 1.10203 1.25573 0.92343 0.92886 0.92587 1.16004 0.83912 0.96699 1.09704 1.21828 0.94403 0.96660 0.89682 1.21574 0.94057 0.99066 1.00428 1.21429 1.01333 0.91113 0.87393 1.30694 1.05824 1.20911 1.19010 1.01950 0.73314 0.73107 0.72582 1.93543 1.37327 1.86591 1.79299 1.93536 1.69891 1.51603 1.82477 1.52075 1.67540 1.34345 1.24294 1.16521 0.89511 0.94906 1.10317 1.20791 0.98564 0.93641 0.97074 1.20969 0.94460 0.99770 1.05029 1.18027 0.92844 0.91471 0.88636 1.19922 1.00874 0.97631 1.32753 0.90410 1.26656 0.94630 1.00200 0.96160 1.69861 1.17049 1.22783 1.33825 0.85220 0.79354 0.77454 0.78147 1.18374 1.19089 1.19138 1.20808 0.98543 1.00464 1.05795 1.20797 0.93386 0.97476 0.97447 1.20983 0.91715 0.97632 0.89539 0.81105 0.81299 0.83918 0.73850 0.86903 0.87306 0.89896 0.88121 0.87087 0.82626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -12.40 18.54 19.00 0.35 -12.05 16 2 C 0.28 6.57 15.33 88.33 1.35 7.92 16 3 C -0.06 -1.25 5.73 -21.36 -0.12 -1.37 16 4 C -0.01 -0.10 9.76 22.54 0.22 0.12 16 5 C -0.13 -2.63 10.03 22.23 0.22 -2.41 16 6 C 0.01 0.19 9.52 22.33 0.21 0.40 16 7 C -0.68 -17.99 5.85 22.23 0.13 -17.86 16 8 S 2.70 80.67 5.70 -56.49 -0.32 80.34 16 9 O -0.98 -34.70 16.07 -128.00 -2.06 -36.76 16 10 O -0.98 -31.21 17.43 -128.00 -2.23 -33.44 16 11 N -1.03 -30.55 5.65 -51.07 -0.29 -30.84 16 12 C -0.02 -0.61 5.80 38.67 0.22 -0.38 16 13 C -0.08 -3.12 9.90 22.15 0.22 -2.90 16 14 C -0.18 -8.36 8.63 22.47 0.19 -8.16 16 15 C 0.09 4.50 5.58 -21.27 -0.12 4.39 16 16 C -0.48 -23.51 9.04 23.38 0.21 -23.29 16 17 H 0.08 3.69 7.89 -2.91 -0.02 3.66 16 18 C 0.04 1.82 5.19 85.23 0.44 2.26 16 19 N -0.81 -37.45 10.83 21.82 0.24 -37.22 16 20 Si 0.98 34.59 29.59 68.60 2.03 36.62 16 21 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 22 H -0.27 -9.14 7.11 99.48 0.71 -8.43 16 23 H -0.27 -9.09 7.11 99.48 0.71 -8.38 16 24 C -0.24 -10.54 9.74 22.48 0.22 -10.32 16 25 C -0.07 -2.83 9.18 22.15 0.20 -2.63 16 26 C 0.02 0.54 9.23 22.54 0.21 0.75 16 27 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 28 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 29 H 0.14 3.87 7.49 -2.91 -0.02 3.84 16 30 H 0.42 10.26 8.95 -96.75 -0.87 9.40 16 31 H 0.11 3.88 8.06 -2.91 -0.02 3.86 16 32 H 0.11 5.27 6.09 -2.91 -0.02 5.25 16 33 H 0.29 12.06 8.30 -92.71 -0.77 11.29 16 34 H 0.10 4.31 8.06 -2.92 -0.02 4.28 16 35 H 0.11 4.22 7.84 -2.91 -0.02 4.20 16 36 H 0.16 3.20 7.74 -2.91 -0.02 3.18 16 Total: -1.00 -60.65 340.16 1.82 -58.82 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.28 Total: 28.03 kcal Atomic # 6 Polarization: -57.31 SS G_CDS: 3.82 Total: -53.50 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: 0.30 Total: -80.11 kcal Atomic # 8 Polarization: -65.91 SS G_CDS: -4.29 Total: -70.20 kcal Atomic # 14 Polarization: 34.59 SS G_CDS: 2.03 Total: 36.62 kcal Atomic # 16 Polarization: 80.67 SS G_CDS: -0.32 Total: 80.34 kcal Total: -60.65 1.82 -58.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029967120.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.532 kcal (2) G-P(sol) polarization free energy of solvation -60.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds