Wall clock time and date at job start Tue Mar 31 2020 15:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39842 * 120.08182 * 12.33359 * 3 2 1 5 5 C 1.37609 * 119.93045 * 180.02562 * 4 3 2 6 6 C 1.39230 * 120.11281 * 0.02562 * 5 4 3 7 7 N 1.39185 * 119.91706 * 179.97438 * 6 5 4 8 8 C 1.46496 * 120.00214 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47294 * 180.02562 * 8 7 6 10 10 C 1.38300 * 119.92722 * 269.72913 * 9 8 7 11 11 C 1.38106 * 120.06640 * 179.72130 * 10 9 8 12 12 C 1.38884 * 119.92848 * 0.57325 * 11 10 9 13 13 O 1.35747 * 120.06732 * 179.68192 * 12 11 10 14 14 C 1.34830 * 117.00034 * 174.48794 * 13 12 11 15 15 H 1.08007 * 119.99782 * 5.04841 * 14 13 12 16 16 C 1.38652 * 120.00117 * 185.05708 * 14 13 12 17 17 N 1.31551 * 120.00200 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00066 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46857 * 59.99586 * 18 16 14 20 20 H 1.48494 * 109.47321 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47107 * 300.00309 * 18 16 14 22 22 C 1.38882 * 119.86331 * 359.69851 * 12 11 10 23 23 C 1.38099 * 119.92971 * 0.02562 * 22 12 11 24 24 C 1.39095 * 120.16760 * 0.25649 * 6 5 4 25 25 C 1.37825 * 120.06618 * 359.44584 * 24 6 5 26 26 Cl 1.73603 * 120.05790 * 180.27469 * 25 24 6 27 27 H 1.07992 * 120.03665 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.94287 * 179.97438 * 5 4 3 29 29 H 0.97007 * 119.99625 * 0.02562 * 7 6 5 30 30 H 1.08996 * 109.47094 * 300.00144 * 8 7 6 31 31 H 1.09001 * 109.47027 * 60.00120 * 8 7 6 32 32 H 1.08003 * 119.96820 * 359.97438 * 10 9 8 33 33 H 1.07997 * 120.03885 * 180.27264 * 11 10 9 34 34 H 0.97001 * 120.00383 * 180.02562 * 17 16 14 35 35 H 1.07991 * 120.03668 * 179.97438 * 22 12 11 36 36 H 1.07998 * 119.96642 * 179.97438 * 23 22 12 37 37 H 1.08006 * 119.96622 * 179.70051 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -1.1812 -0.2585 5 6 4.6456 -1.1771 -0.2572 6 6 5.3404 0.0014 0.0015 7 7 6.7322 0.0007 0.0024 8 6 7.4652 1.2397 0.2738 9 6 8.9467 0.9701 0.2152 10 6 9.6257 0.5959 1.3604 11 6 10.9824 0.3425 1.3089 12 6 11.6669 0.4755 0.1078 13 8 13.0016 0.2334 0.0553 14 6 13.5828 0.2692 -1.1608 15 1 13.0070 0.5630 -2.0261 16 6 14.9196 -0.0713 -1.3006 17 7 15.6210 -0.4288 -0.2467 18 14 15.7246 -0.0224 -2.9856 19 1 15.6465 1.3564 -3.5316 20 1 17.1484 -0.4270 -2.8659 21 1 15.0189 -0.9570 -3.8987 22 6 10.9832 0.8570 -1.0393 23 6 9.6256 1.1034 -0.9824 24 6 4.6471 1.1781 0.2650 25 6 3.2689 1.1835 0.2594 26 17 2.4039 2.6539 0.5812 27 1 2.7319 -2.0963 -0.4581 28 1 5.1875 -2.0898 -0.4564 29 1 7.2169 -0.8201 -0.1776 30 1 7.2027 1.9883 -0.4737 31 1 7.2015 1.6081 1.2652 32 1 9.0938 0.4976 2.2952 33 1 11.5113 0.0460 2.2025 34 1 16.5563 -0.6667 -0.3444 35 1 11.5128 0.9617 -1.9746 36 1 9.0934 1.4004 -1.8740 37 1 5.1894 2.0894 0.4700 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037253264.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:50 Heat of formation + Delta-G solvation = 28.759003 kcal Electronic energy + Delta-G solvation = -22645.947145 eV Core-core repulsion = 18992.976912 eV Total energy + Delta-G solvation = -3652.970233 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.94573 -40.55945 -38.71610 -37.76175 -37.48915 -36.06153 -34.30536 -32.25297 -31.83991 -31.76363 -29.88264 -27.59387 -26.24947 -24.03539 -23.61752 -23.43139 -21.92442 -19.96797 -19.85175 -18.91123 -18.48099 -17.25994 -16.48352 -16.35556 -16.01862 -15.76717 -15.52319 -15.46095 -15.28867 -15.01719 -14.94053 -14.67678 -14.46569 -14.32012 -13.97403 -13.74384 -13.64781 -13.44838 -13.28427 -12.94052 -12.60882 -12.47712 -12.33318 -12.30889 -12.15670 -12.08942 -11.96835 -11.19567 -10.91679 -10.79376 -9.87294 -9.77533 -8.98959 -8.47320 -8.44699 -6.15591 -0.10953 0.31335 0.58820 0.61609 1.01139 1.36512 1.46005 1.52156 1.70125 2.01342 2.17811 2.44913 2.88014 2.89564 3.02221 3.22620 3.52049 3.83819 3.90787 4.08042 4.16490 4.21344 4.34995 4.41492 4.52425 4.60901 4.71277 4.80097 4.84747 4.99013 5.08578 5.16262 5.20306 5.30420 5.31595 5.54699 5.61193 5.72697 5.78406 6.02910 6.18773 6.26447 6.54254 6.74530 6.97616 7.77691 8.75198 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.029186 B = 0.001905 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.145761 B =14698.251423 C =14891.620517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.281 3.719 3 C -0.115 4.115 4 C 0.003 3.997 5 C -0.193 4.193 6 C 0.267 3.733 7 N -0.718 5.718 8 C 0.178 3.822 9 C -0.181 4.181 10 C -0.043 4.043 11 C -0.209 4.209 12 C 0.120 3.880 13 O -0.232 6.232 14 C -0.413 4.413 15 H 0.104 0.896 16 C -0.022 4.022 17 N -0.919 5.919 18 Si 1.017 2.983 19 H -0.258 1.258 20 H -0.274 1.274 21 H -0.257 1.257 22 C -0.248 4.248 23 C -0.045 4.045 24 C -0.201 4.201 25 C 0.055 3.945 26 Cl -0.069 7.069 27 H 0.161 0.839 28 H 0.159 0.841 29 H 0.412 0.588 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.150 0.850 33 H 0.111 0.889 34 H 0.272 0.728 35 H 0.117 0.883 36 H 0.142 0.858 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.859 1.009 -1.100 20.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.032 4.032 3 C -0.122 4.122 4 C -0.019 4.019 5 C -0.215 4.215 6 C 0.156 3.844 7 N -0.342 5.342 8 C 0.055 3.945 9 C -0.182 4.182 10 C -0.061 4.061 11 C -0.229 4.229 12 C 0.069 3.931 13 O -0.138 6.138 14 C -0.489 4.489 15 H 0.121 0.879 16 C -0.220 4.220 17 N -0.557 5.557 18 Si 0.836 3.164 19 H -0.182 1.182 20 H -0.199 1.199 21 H -0.181 1.181 22 C -0.267 4.267 23 C -0.063 4.063 24 C -0.224 4.224 25 C 0.025 3.975 26 Cl -0.039 7.039 27 H 0.179 0.821 28 H 0.176 0.824 29 H 0.248 0.752 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.168 0.832 33 H 0.129 0.871 34 H 0.081 0.919 35 H 0.135 0.865 36 H 0.160 0.840 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -22.174 1.233 -0.793 22.222 hybrid contribution 1.491 -0.071 -0.502 1.575 sum -20.683 1.163 -1.294 20.756 Atomic orbital electron populations 1.81229 1.13260 1.08617 1.11787 1.25746 0.92713 0.92604 0.92163 1.15680 0.83529 0.95042 1.17992 1.21045 0.93521 0.95820 0.91483 1.20869 0.93628 0.98050 1.09002 1.17982 0.84120 0.93134 0.89134 1.45093 1.01900 1.12664 1.74591 1.20182 0.85495 0.86404 1.02397 1.19531 0.95662 1.09814 0.93182 1.20933 0.91486 0.94691 0.98998 1.20485 0.95735 1.10962 0.95685 1.20044 0.84173 0.93327 0.95572 1.83945 1.17623 1.79390 1.32829 1.21774 0.94944 1.47795 0.84352 0.87903 1.26570 0.95958 0.95566 1.03931 1.70168 1.09421 1.44158 1.31948 0.84672 0.77168 0.79789 0.74787 1.18191 1.19882 1.18079 1.21265 0.96575 1.10629 0.98225 1.20993 0.92017 0.95123 0.98212 1.20467 0.91055 0.99476 1.11435 1.20653 0.92214 0.86069 0.98550 1.98405 1.76908 1.35070 1.93563 0.82148 0.82359 0.75153 0.89935 0.89678 0.83228 0.87117 0.91852 0.86526 0.84028 0.83071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.88 18.54 19.00 0.35 -11.53 16 2 C 0.28 5.71 14.38 88.33 1.27 6.98 16 3 C -0.12 -1.77 5.75 -21.24 -0.12 -1.89 16 4 C 0.00 0.03 9.75 22.51 0.22 0.25 16 5 C -0.19 -1.81 9.87 22.36 0.22 -1.59 16 6 C 0.27 3.12 6.65 38.42 0.26 3.38 16 7 N -0.72 -8.71 5.70 -343.13 -1.96 -10.67 16 8 C 0.18 2.48 5.02 85.63 0.43 2.91 16 9 C -0.18 -4.07 5.25 -19.83 -0.10 -4.17 16 10 C -0.04 -1.12 9.69 22.25 0.22 -0.91 16 11 C -0.21 -7.81 9.99 22.39 0.22 -7.58 16 12 C 0.12 5.41 6.65 22.58 0.15 5.56 16 13 O -0.23 -13.19 9.76 -22.71 -0.22 -13.41 16 14 C -0.41 -22.82 9.49 67.92 0.64 -22.18 16 15 H 0.10 5.15 5.20 -2.91 -0.02 5.14 16 16 C -0.02 -1.22 5.49 84.83 0.47 -0.76 16 17 N -0.92 -54.60 13.67 21.61 0.30 -54.30 16 18 Si 1.02 40.92 29.55 68.60 2.03 42.95 16 19 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 20 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 21 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 22 C -0.25 -9.45 9.17 22.39 0.21 -9.25 16 23 C -0.05 -1.23 9.69 22.25 0.22 -1.01 16 24 C -0.20 -2.60 9.06 22.38 0.20 -2.39 16 25 C 0.06 0.86 6.34 22.58 0.14 1.00 16 26 Cl -0.07 -1.20 28.02 -2.72 -0.08 -1.27 16 27 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 28 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 29 H 0.41 4.91 8.47 -92.70 -0.78 4.13 16 30 H 0.08 1.00 7.89 -2.39 -0.02 0.98 16 31 H 0.09 0.99 7.86 -2.39 -0.02 0.97 16 32 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 33 H 0.11 4.20 8.06 -2.91 -0.02 4.17 16 34 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.12 4.64 5.64 -2.92 -0.02 4.62 16 36 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 37 H 0.15 1.66 6.69 -2.91 -0.02 1.64 16 Total: -1.00 -69.93 349.15 5.42 -64.51 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.36 Total: 15.37 kcal Atomic # 6 Polarization: -36.28 SS G_CDS: 4.64 Total: -31.64 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -1.31 Total: -76.50 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.22 Total: -13.41 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.27 kcal Total: -69.93 5.42 -64.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037253264.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.273 kcal (2) G-P(sol) polarization free energy of solvation -69.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds