Wall clock time and date at job start Tue Mar 31 2020 14:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00011 * 2 1 4 4 H 1.48502 * 109.47044 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46799 * 299.99440 * 3 2 1 6 6 H 1.48494 * 109.47301 * 59.99884 * 3 2 1 7 7 C 1.37878 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99554 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00503 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.47270 * 179.97438 * 9 7 2 11 11 C 1.76204 * 102.99822 * 180.02562 * 10 9 7 12 12 C 1.39196 * 119.71014 * 179.97438 * 11 10 9 13 13 C 1.38270 * 119.09376 * 179.76492 * 12 11 10 14 14 C 1.38921 * 118.51036 * 0.51347 * 13 12 11 15 15 S 1.76193 * 120.32961 * 179.73383 * 14 13 12 16 16 O 1.42105 * 106.40403 * 23.26474 * 15 14 13 17 17 O 1.42098 * 106.40145 * 156.18403 * 15 14 13 18 18 N 1.65606 * 107.21910 * 269.72585 * 15 14 13 19 19 C 1.47025 * 125.64455 * 269.69390 * 18 15 14 20 20 C 1.54314 * 107.27326 * 180.96957 * 19 18 15 21 21 C 1.55152 * 102.86436 * 22.52261 * 20 19 18 22 22 C 1.47417 * 125.65195 * 90.00035 * 18 15 14 23 23 C 1.38026 * 119.33466 * 359.46065 * 14 13 12 24 24 N 1.31959 * 120.87041 * 0.29571 * 23 14 13 25 25 H 0.96996 * 120.00282 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46754 * 59.99934 * 9 7 2 27 27 H 1.08996 * 109.47040 * 300.00247 * 9 7 2 28 28 H 1.07995 * 120.45717 * 359.97438 * 12 11 10 29 29 H 1.08004 * 120.74750 * 180.24498 * 13 12 11 30 30 H 1.08996 * 109.87934 * 300.51009 * 19 18 15 31 31 H 1.08999 * 109.88115 * 61.67648 * 19 18 15 32 32 H 1.09007 * 110.92229 * 264.10817 * 20 19 18 33 33 H 1.08995 * 110.59223 * 140.78952 * 20 19 18 34 34 H 1.09000 * 111.00652 * 206.23344 * 21 20 19 35 35 H 1.08998 * 111.03838 * 82.39546 * 21 20 19 36 36 H 1.09004 * 110.36434 * 274.67653 * 22 18 15 37 37 H 1.08999 * 110.36847 * 36.88545 * 22 18 15 38 38 H 1.08007 * 119.56381 * 180.27525 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2127 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 16 2.4299 -3.8780 0.0005 11 6 1.3825 -5.2949 -0.0002 12 6 1.9446 -6.5683 -0.0010 13 6 1.1108 -7.6713 0.0034 14 6 -0.2629 -7.4642 -0.0026 15 16 -1.3694 -8.8353 -0.0045 16 8 -0.6491 -9.9331 0.5390 17 8 -2.5941 -8.3633 0.5401 18 7 -1.6768 -9.2150 -1.5868 19 6 -2.7694 -8.6659 -2.4031 20 6 -2.6761 -9.3238 -3.7959 21 6 -1.8897 -10.6301 -3.5089 22 6 -0.9041 -10.1644 -2.4083 23 6 -0.7521 -6.1735 -0.0013 24 7 0.0670 -5.1389 -0.0003 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5568 0.8902 28 1 3.0173 -6.6932 -0.0015 29 1 1.5183 -8.6716 0.0069 30 1 -3.7294 -8.9009 -1.9437 31 1 -2.6553 -7.5860 -2.4969 32 1 -2.1272 -8.6880 -4.4907 33 1 -3.6706 -9.5489 -4.1809 34 1 -1.3537 -10.9665 -4.3964 35 1 -2.5517 -11.4113 -3.1354 36 1 -0.0438 -9.6663 -2.8555 37 1 -0.5793 -11.0117 -1.8044 38 1 -1.8195 -6.0082 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048438978.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:45 Heat of formation + Delta-G solvation = -44.720737 kcal Electronic energy + Delta-G solvation = -22858.091656 eV Core-core repulsion = 19339.422759 eV Total energy + Delta-G solvation = -3518.668896 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.81197 -38.61621 -37.35635 -35.96071 -33.28877 -32.58210 -31.40233 -31.21827 -29.31219 -28.67307 -24.33776 -23.78347 -22.96862 -22.80559 -21.55062 -19.27348 -18.29408 -17.95088 -17.36394 -16.75009 -16.35202 -16.29124 -15.26930 -14.97690 -14.47646 -14.33301 -14.12856 -13.95612 -13.88582 -13.60569 -13.19393 -12.97616 -12.64710 -12.42601 -12.40050 -12.25652 -12.14017 -11.87977 -11.64771 -11.50787 -11.31131 -11.06141 -11.00554 -10.83861 -10.52549 -10.30914 -9.74672 -9.68899 -9.48101 -9.33059 -9.17899 -8.70840 -7.13494 -6.28204 -4.36223 0.18462 0.66370 1.30294 2.02827 2.80311 3.18802 3.26019 3.27520 3.38045 3.52406 3.72957 3.94895 4.21658 4.26465 4.45262 4.57650 4.61404 4.76611 4.95834 5.07948 5.08544 5.13049 5.17842 5.20474 5.41226 5.50453 5.52012 5.60793 5.68556 5.77114 5.79371 5.80818 5.90119 6.12936 6.51484 7.01003 7.12134 7.61060 7.82446 7.85707 8.65163 9.27973 10.82274 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.021011 B = 0.002784 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.310030 B =10056.562944 C =10422.923998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.070 3.930 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.528 4.528 8 H 0.068 0.932 9 C 0.077 3.923 10 S -0.084 6.084 11 C 0.178 3.822 12 C -0.187 4.187 13 C 0.036 3.964 14 C -0.768 4.768 15 S 2.722 3.278 16 O -0.957 6.957 17 O -0.953 6.953 18 N -1.013 6.013 19 C 0.117 3.883 20 C -0.129 4.129 21 C -0.129 4.129 22 C 0.114 3.886 23 C 0.223 3.777 24 N -0.495 5.495 25 H 0.267 0.733 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.198 -21.268 -7.338 22.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.135 4.135 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.568 4.568 8 H 0.086 0.914 9 C -0.070 4.070 10 S 0.165 5.835 11 C -0.070 4.070 12 C -0.215 4.215 13 C 0.007 3.993 14 C -0.863 4.863 15 S 2.813 3.187 16 O -0.948 6.948 17 O -0.944 6.944 18 N -0.852 5.852 19 C -0.008 4.008 20 C -0.168 4.168 21 C -0.168 4.168 22 C -0.011 4.011 23 C 0.057 3.943 24 N -0.209 5.209 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.163 0.837 29 H 0.165 0.835 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -2.699 -20.401 -6.513 21.585 hybrid contribution -0.190 0.647 -0.276 0.729 sum -2.889 -19.754 -6.789 21.086 Atomic orbital electron populations 1.69978 1.06131 1.27467 1.48390 1.24954 0.94991 0.99273 0.94308 0.86276 0.79976 0.82377 0.77898 1.19398 1.20593 1.20572 1.20681 0.93377 0.88684 1.54024 0.91404 1.21375 0.93903 0.89432 1.02316 1.85635 1.15577 0.97240 1.85044 1.24130 0.94289 0.98378 0.90163 1.21749 1.01384 0.91570 1.06835 1.21055 0.90940 0.99569 0.87689 1.31551 1.11024 1.17556 1.26142 1.01044 0.73349 0.73280 0.71022 1.93554 1.74454 1.51239 1.75511 1.93577 1.43190 1.82177 1.75409 1.58684 1.40531 1.55630 1.30370 1.21771 0.89659 0.98241 0.91175 1.22636 1.01445 0.96709 0.96010 1.22759 0.98079 0.97615 0.98363 1.22082 0.94390 0.91994 0.92683 1.22538 1.00086 0.86305 0.85357 1.68476 1.02880 1.33512 1.15995 0.92310 0.92984 0.92939 0.83712 0.83473 0.90712 0.91298 0.90424 0.90009 0.89887 0.90490 0.91409 0.89759 0.81511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.37 13.29 55.43 0.74 -24.64 16 2 C 0.07 1.92 5.46 -17.82 -0.10 1.83 16 3 Si 0.91 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.53 -14.43 9.13 -34.44 -0.31 -14.75 16 8 H 0.07 1.81 7.71 -52.48 -0.40 1.41 16 9 C 0.08 1.97 4.96 36.01 0.18 2.15 16 10 S -0.08 -1.76 21.83 -107.50 -2.35 -4.11 16 11 C 0.18 3.38 7.00 -16.92 -0.12 3.26 16 12 C -0.19 -2.84 9.84 -39.21 -0.39 -3.22 16 13 C 0.04 0.48 9.64 -39.32 -0.38 0.11 16 14 C -0.77 -10.82 5.99 -39.41 -0.24 -11.05 16 15 S 2.72 34.19 5.95 -107.50 -0.64 33.55 16 16 O -0.96 -13.52 16.67 -57.17 -0.95 -14.47 16 17 O -0.95 -14.27 16.87 -57.17 -0.96 -15.24 16 18 N -1.01 -9.83 3.70 -111.43 -0.41 -10.24 16 19 C 0.12 0.97 6.98 -3.07 -0.02 0.95 16 20 C -0.13 -0.76 6.95 -24.90 -0.17 -0.94 16 21 C -0.13 -0.72 7.08 -24.59 -0.17 -0.89 16 22 C 0.11 0.85 7.11 -2.54 -0.02 0.83 16 23 C 0.22 3.65 10.67 -17.57 -0.19 3.47 16 24 N -0.50 -9.81 9.43 -12.10 -0.11 -9.93 16 25 H 0.27 7.17 8.31 -40.82 -0.34 6.84 16 26 H 0.05 1.42 8.14 -51.92 -0.42 1.00 16 27 H 0.05 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.15 1.82 8.06 -52.49 -0.42 1.39 16 29 H 0.15 1.51 7.70 -52.48 -0.40 1.11 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.61 7.78 -51.93 -0.40 0.21 16 38 H 0.17 2.39 7.62 -52.48 -0.40 1.99 16 LS Contribution 349.86 15.07 5.27 5.27 Total: -1.00 -33.25 349.86 -11.34 -44.59 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -4.97 Total: -2.32 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -1.93 Total: -18.25 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.21 Total: -44.80 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -1.92 Total: -29.71 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 32.42 SS G_CDS: -2.99 Total: 29.44 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.25 -11.34 -44.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048438978.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.130 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds