Wall clock time and date at job start Tue Mar 31 2020 14:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00011 * 2 1 4 4 H 1.48502 * 109.47044 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46799 * 299.99440 * 3 2 1 6 6 H 1.48494 * 109.47301 * 59.99884 * 3 2 1 7 7 C 1.37878 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99554 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00503 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.47270 * 179.97438 * 9 7 2 11 11 C 1.76204 * 102.99822 * 180.02562 * 10 9 7 12 12 C 1.39196 * 119.71014 * 179.97438 * 11 10 9 13 13 C 1.38270 * 119.09376 * 179.76492 * 12 11 10 14 14 C 1.38921 * 118.51036 * 0.51347 * 13 12 11 15 15 S 1.76193 * 120.32961 * 179.73383 * 14 13 12 16 16 O 1.42105 * 106.40403 * 23.26474 * 15 14 13 17 17 O 1.42098 * 106.40145 * 156.18403 * 15 14 13 18 18 N 1.65606 * 107.21910 * 269.72585 * 15 14 13 19 19 C 1.47025 * 125.64455 * 269.69390 * 18 15 14 20 20 C 1.54314 * 107.27326 * 180.96957 * 19 18 15 21 21 C 1.55152 * 102.86436 * 22.52261 * 20 19 18 22 22 C 1.47417 * 125.65195 * 90.00035 * 18 15 14 23 23 C 1.38026 * 119.33466 * 359.46065 * 14 13 12 24 24 N 1.31959 * 120.87041 * 0.29571 * 23 14 13 25 25 H 0.96996 * 120.00282 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46754 * 59.99934 * 9 7 2 27 27 H 1.08996 * 109.47040 * 300.00247 * 9 7 2 28 28 H 1.07995 * 120.45717 * 359.97438 * 12 11 10 29 29 H 1.08004 * 120.74750 * 180.24498 * 13 12 11 30 30 H 1.08996 * 109.87934 * 300.51009 * 19 18 15 31 31 H 1.08999 * 109.88115 * 61.67648 * 19 18 15 32 32 H 1.09007 * 110.92229 * 264.10817 * 20 19 18 33 33 H 1.08995 * 110.59223 * 140.78952 * 20 19 18 34 34 H 1.09000 * 111.00652 * 206.23344 * 21 20 19 35 35 H 1.08998 * 111.03838 * 82.39546 * 21 20 19 36 36 H 1.09004 * 110.36434 * 274.67653 * 22 18 15 37 37 H 1.08999 * 110.36847 * 36.88545 * 22 18 15 38 38 H 1.08007 * 119.56381 * 180.27525 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2127 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 16 2.4299 -3.8780 0.0005 11 6 1.3825 -5.2949 -0.0002 12 6 1.9446 -6.5683 -0.0010 13 6 1.1108 -7.6713 0.0034 14 6 -0.2629 -7.4642 -0.0026 15 16 -1.3694 -8.8353 -0.0045 16 8 -0.6491 -9.9331 0.5390 17 8 -2.5941 -8.3633 0.5401 18 7 -1.6768 -9.2150 -1.5868 19 6 -2.7694 -8.6659 -2.4031 20 6 -2.6761 -9.3238 -3.7959 21 6 -1.8897 -10.6301 -3.5089 22 6 -0.9041 -10.1644 -2.4083 23 6 -0.7521 -6.1735 -0.0013 24 7 0.0670 -5.1389 -0.0003 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5568 0.8902 28 1 3.0173 -6.6932 -0.0015 29 1 1.5183 -8.6716 0.0069 30 1 -3.7294 -8.9009 -1.9437 31 1 -2.6553 -7.5860 -2.4969 32 1 -2.1272 -8.6880 -4.4907 33 1 -3.6706 -9.5489 -4.1809 34 1 -1.3537 -10.9665 -4.3964 35 1 -2.5517 -11.4113 -3.1354 36 1 -0.0438 -9.6663 -2.8555 37 1 -0.5793 -11.0117 -1.8044 38 1 -1.8195 -6.0082 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048438978.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:45 Heat of formation + Delta-G solvation = -67.598656 kcal Electronic energy + Delta-G solvation = -22859.083717 eV Core-core repulsion = 19339.422759 eV Total energy + Delta-G solvation = -3519.660957 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.13718 -39.22906 -38.47022 -37.07990 -35.37487 -33.89010 -32.67787 -31.86767 -30.77103 -29.88448 -25.83754 -25.19244 -24.67010 -23.53971 -22.06115 -20.24703 -19.55609 -19.07115 -18.54961 -18.29223 -17.92974 -17.07819 -16.78727 -16.27944 -15.88166 -15.63131 -15.41059 -14.86989 -14.69423 -14.59890 -14.40668 -14.29791 -14.20845 -14.10648 -13.55150 -13.36833 -13.26627 -12.81401 -12.76452 -12.68264 -12.52977 -12.28961 -12.12899 -12.01699 -11.65751 -11.63458 -11.50544 -11.26918 -11.01895 -10.77722 -10.73064 -10.02865 -8.75999 -8.37575 -6.54744 -0.89151 -0.58414 0.06175 0.49987 1.38728 1.39276 1.47498 1.56414 1.83555 2.30271 2.33083 2.63177 2.96991 3.01533 3.30923 3.62939 3.66399 3.75576 3.85941 4.05227 4.15563 4.39777 4.50898 4.56263 4.59317 4.62786 4.63457 4.85945 4.91510 4.97232 5.01847 5.05252 5.07944 5.21166 5.30121 5.37734 5.48197 5.49421 5.76151 6.49228 6.54413 7.14922 8.74610 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.021011 B = 0.002784 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.310030 B =10056.562944 C =10422.923998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.016 3.984 3 Si 0.982 3.018 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.071 0.929 9 C 0.084 3.916 10 S -0.076 6.076 11 C 0.149 3.851 12 C -0.174 4.174 13 C 0.045 3.955 14 C -0.754 4.754 15 S 2.744 3.256 16 O -0.967 6.967 17 O -0.979 6.979 18 N -1.010 6.010 19 C 0.103 3.897 20 C -0.125 4.125 21 C -0.123 4.123 22 C 0.101 3.899 23 C 0.204 3.796 24 N -0.536 5.536 25 H 0.271 0.729 26 H 0.020 0.980 27 H 0.017 0.983 28 H 0.176 0.824 29 H 0.190 0.810 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.148 -23.430 -8.403 24.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.186 4.186 3 Si 0.804 3.196 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.587 4.587 8 H 0.090 0.910 9 C -0.064 4.064 10 S 0.171 5.829 11 C -0.099 4.099 12 C -0.202 4.202 13 C 0.016 3.984 14 C -0.846 4.846 15 S 2.834 3.166 16 O -0.957 6.957 17 O -0.969 6.969 18 N -0.851 5.851 19 C -0.021 4.021 20 C -0.163 4.163 21 C -0.162 4.162 22 C -0.023 4.023 23 C 0.039 3.961 24 N -0.250 5.250 25 H 0.080 0.920 26 H 0.039 0.961 27 H 0.036 0.964 28 H 0.193 0.807 29 H 0.207 0.793 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.649 -22.583 -7.573 23.876 hybrid contribution -0.649 1.030 0.012 1.218 sum -2.298 -21.552 -7.561 22.955 Atomic orbital electron populations 1.70107 1.07952 1.28694 1.49200 1.25992 0.95865 1.03310 0.93440 0.85151 0.78885 0.77317 0.78209 1.18317 1.19725 1.19893 1.21051 0.93686 0.89809 1.54104 0.91045 1.20871 0.94425 0.92055 0.99071 1.85134 1.14150 0.96308 1.87269 1.24072 0.94128 0.98620 0.93057 1.22076 1.03183 0.90107 1.04830 1.21594 0.90266 1.00888 0.85610 1.31969 1.12170 1.17216 1.23211 1.00342 0.72362 0.72346 0.71569 1.93538 1.74632 1.51023 1.76504 1.93545 1.44114 1.82486 1.76770 1.58484 1.41078 1.55733 1.29765 1.22020 0.89204 0.98363 0.92532 1.22657 1.02609 0.96759 0.94322 1.22791 0.97713 0.97329 0.98405 1.22413 0.95114 0.91731 0.93074 1.22739 1.00327 0.86745 0.86256 1.68320 1.03900 1.35656 1.17120 0.91961 0.96137 0.96422 0.80701 0.79321 0.90627 0.91783 0.90072 0.88439 0.87800 0.90051 0.90304 0.89334 0.80627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.98 13.29 21.45 0.28 -54.70 16 2 C 0.02 0.88 5.46 84.65 0.46 1.34 16 3 Si 0.98 43.11 29.54 68.60 2.03 45.14 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -31.01 9.13 25.60 0.23 -30.78 16 8 H 0.07 3.89 7.71 -2.91 -0.02 3.87 16 9 C 0.08 4.58 4.96 71.24 0.35 4.93 16 10 S -0.08 -3.28 21.83 -56.49 -1.23 -4.51 16 11 C 0.15 5.70 7.00 84.83 0.59 6.30 16 12 C -0.17 -4.94 9.84 22.51 0.22 -4.72 16 13 C 0.04 1.07 9.64 22.44 0.22 1.29 16 14 C -0.75 -20.22 5.99 22.38 0.13 -20.08 16 15 S 2.74 64.48 5.95 -56.49 -0.34 64.15 16 16 O -0.97 -24.85 16.67 -128.00 -2.13 -26.98 16 17 O -0.98 -28.72 16.87 -128.00 -2.16 -30.88 16 18 N -1.01 -17.53 3.70 -506.47 -1.87 -19.40 16 19 C 0.10 1.56 6.98 86.73 0.61 2.17 16 20 C -0.12 -1.15 6.95 31.78 0.22 -0.93 16 21 C -0.12 -0.97 7.08 31.98 0.23 -0.74 16 22 C 0.10 1.21 7.11 86.85 0.62 1.82 16 23 C 0.20 6.78 10.67 84.62 0.90 7.68 16 24 N -0.54 -22.08 9.43 -192.21 -1.81 -23.90 16 25 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 26 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.18 3.82 8.06 -2.91 -0.02 3.80 16 29 H 0.19 2.99 7.70 -2.91 -0.02 2.97 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.10 0.62 8.14 -2.39 -0.02 0.61 16 34 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 1.01 7.78 -2.39 -0.02 0.99 16 38 H 0.18 5.27 7.62 -2.91 -0.02 5.24 16 Total: -1.00 -74.87 349.86 -1.38 -76.25 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 1.07 Total: 6.55 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 4.79 Total: -31.72 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -3.40 Total: -98.00 kcal Atomic # 8 Polarization: -53.57 SS G_CDS: -4.29 Total: -57.86 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 61.20 SS G_CDS: -1.57 Total: 59.64 kcal Total: -74.87 -1.38 -76.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048438978.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.654 kcal (2) G-P(sol) polarization free energy of solvation -74.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds