Wall clock time and date at job start Tue Mar 31 2020 14:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99890 * 2 1 4 4 H 1.48498 * 109.47142 * 269.99521 * 3 2 1 5 5 H 1.48496 * 109.47396 * 30.00130 * 3 2 1 6 6 H 1.48509 * 109.46980 * 149.99860 * 3 2 1 7 7 C 1.37881 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99493 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00250 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46971 * 179.97438 * 9 7 2 11 11 O 1.45205 * 109.46854 * 179.97438 * 10 9 7 12 12 C 1.34225 * 116.99943 * 179.97438 * 11 10 9 13 13 O 1.20825 * 120.00047 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99932 * 180.02562 * 12 11 10 15 15 C 1.52996 * 109.46946 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47245 * 180.02562 * 15 14 12 17 17 S 1.81399 * 109.47445 * 179.97438 * 16 15 14 18 18 C 1.76195 * 102.99929 * 179.97438 * 17 16 15 19 19 C 1.38963 * 120.06806 * 359.72099 * 18 17 16 20 20 C 1.38090 * 119.93161 * 179.79491 * 19 18 17 21 21 C 1.38404 * 120.06325 * 0.48504 * 20 19 18 22 22 Cl 1.73597 * 119.92925 * 179.72530 * 21 20 19 23 23 C 1.38393 * 120.13612 * 359.74586 * 21 20 19 24 24 C 1.38087 * 120.06971 * 0.02562 * 23 21 20 25 25 H 0.97003 * 119.99667 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47142 * 59.98984 * 9 7 2 27 27 H 1.09009 * 109.46588 * 299.99349 * 9 7 2 28 28 H 1.08994 * 109.47300 * 59.99688 * 10 9 7 29 29 H 1.08998 * 109.46848 * 299.98963 * 10 9 7 30 30 H 1.09001 * 109.46980 * 60.00116 * 14 12 11 31 31 H 1.09004 * 109.47113 * 300.00097 * 14 12 11 32 32 H 1.09001 * 109.47372 * 60.00128 * 15 14 12 33 33 H 1.09004 * 109.47108 * 299.99872 * 15 14 12 34 34 H 1.09001 * 109.46962 * 59.99717 * 16 15 14 35 35 H 1.09004 * 109.46832 * 299.99880 * 16 15 14 36 36 H 1.08000 * 120.03345 * 0.02562 * 19 18 17 37 37 H 1.07997 * 119.96644 * 180.21255 * 20 19 18 38 38 H 1.08001 * 119.96295 * 180.02562 * 23 21 20 39 39 H 1.07996 * 120.03144 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5193 -4.9196 0.0011 12 6 2.2503 -6.0453 0.0007 13 8 3.4569 -5.9821 0.0003 14 6 1.5661 -7.3880 0.0007 15 6 2.6198 -8.4973 0.0008 16 6 1.9252 -9.8606 0.0001 17 16 3.1745 -11.1758 -0.0005 18 6 2.2027 -12.6456 -0.0005 19 6 0.8156 -12.5630 0.0059 20 6 0.0567 -13.7167 0.0017 21 6 0.6764 -14.9542 0.0012 22 17 -0.2811 -16.4023 0.0031 23 6 2.0577 -15.0396 -0.0003 24 6 2.8220 -13.8896 -0.0008 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.8720 -3.6043 0.8904 29 1 2.8718 -3.6044 -0.8895 30 1 0.9430 -7.4783 -0.8891 31 1 0.9436 -7.4786 0.8909 32 1 3.2426 -8.4069 0.8908 33 1 3.2426 -8.4069 -0.8892 34 1 1.3028 -9.9508 -0.8901 35 1 1.3021 -9.9513 0.8899 36 1 0.3315 -11.5976 0.0104 37 1 -1.0214 -13.6532 0.0031 38 1 2.5383 -16.0068 -0.0010 39 1 3.8998 -13.9569 -0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058817821.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:23 Heat of formation + Delta-G solvation = -95.644012 kcal Electronic energy + Delta-G solvation = -20852.367169 eV Core-core repulsion = 17297.153616 eV Total energy + Delta-G solvation = -3555.213553 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.05034 -39.60787 -36.90765 -36.45078 -34.82825 -33.37362 -31.74503 -31.30233 -30.43790 -28.63902 -25.11104 -23.75021 -23.29985 -22.44477 -21.03130 -20.31612 -18.37485 -17.46269 -17.04829 -16.58097 -16.27115 -16.02657 -15.82783 -15.44709 -15.10667 -14.69245 -14.51657 -14.16391 -14.10983 -13.64100 -12.98111 -12.88935 -12.66536 -12.38731 -12.24629 -12.20216 -12.10120 -11.70453 -11.33787 -11.27026 -11.20729 -11.07272 -10.78438 -10.71882 -10.64547 -10.26636 -9.96518 -9.68599 -9.65174 -9.64602 -9.32803 -8.47092 -7.83912 -6.13186 -4.17685 0.46887 0.71367 0.96539 1.65681 1.94264 2.50870 2.99398 3.11718 3.26768 3.33089 3.37526 4.18564 4.28970 4.34651 4.41306 4.46516 4.61838 4.67857 4.81081 4.96366 4.97809 5.08774 5.22677 5.23494 5.33931 5.40779 5.47348 5.64486 5.66865 5.67494 5.86929 6.05457 6.06233 6.11890 6.60062 6.95737 7.52401 7.58563 7.83503 8.13892 8.22492 8.87824 9.46944 10.98249 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.039692 B = 0.001439 C = 0.001391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.261792 B =19450.139466 C =20119.045885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.358 6.358 12 C 0.454 3.546 13 O -0.518 6.518 14 C -0.110 4.110 15 C -0.094 4.094 16 C -0.111 4.111 17 S -0.096 6.096 18 C -0.080 4.080 19 C -0.123 4.123 20 C -0.088 4.088 21 C -0.044 4.044 22 Cl -0.070 7.070 23 C -0.091 4.091 24 C -0.090 4.090 25 H 0.263 0.737 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.427 -32.530 0.007 32.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.274 6.274 12 C 0.297 3.703 13 O -0.408 6.408 14 C -0.150 4.150 15 C -0.133 4.133 16 C -0.260 4.260 17 S 0.150 5.850 18 C -0.193 4.193 19 C -0.148 4.148 20 C -0.109 4.109 21 C -0.074 4.074 22 Cl -0.041 7.041 23 C -0.111 4.111 24 C -0.115 4.115 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.784 -32.205 0.012 32.254 hybrid contribution -0.996 0.665 -0.012 1.198 sum 0.788 -31.539 0.000 31.549 Atomic orbital electron populations 1.69975 1.06096 1.27005 1.49736 1.24984 0.94923 0.99403 0.94819 0.86465 0.79768 0.82779 0.78259 1.20467 1.21029 1.19714 1.20985 0.93194 0.90133 1.52271 0.92250 1.19175 0.94197 0.89072 0.98870 1.23649 0.96363 0.78764 1.00967 1.86521 1.42481 1.15908 1.82484 1.23423 0.86576 0.87409 0.72865 1.90644 1.15857 1.88394 1.45902 1.21291 0.99031 0.88528 1.06111 1.21115 0.97495 0.89194 1.05511 1.23767 0.99984 0.95994 1.06216 1.85799 1.12682 0.95073 1.91426 1.21969 0.96459 0.97823 1.03036 1.21198 0.92112 0.99045 1.02418 1.20985 1.00653 0.90268 0.98976 1.20932 0.92016 0.87887 1.06539 1.98381 1.71863 1.36949 1.96952 1.20999 0.91539 0.99283 0.99305 1.20745 1.00285 0.89796 1.00625 0.92701 0.95363 0.95342 0.92294 0.92291 0.87546 0.87551 0.89670 0.89677 0.88754 0.88754 0.84694 0.84507 0.84394 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.53 -14.75 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 9 C 0.02 0.62 5.35 -27.88 -0.15 0.47 16 10 C 0.08 1.64 5.40 37.16 0.20 1.84 16 11 O -0.36 -6.85 10.22 -39.24 -0.40 -7.25 16 12 C 0.45 7.27 7.96 36.01 0.29 7.56 16 13 O -0.52 -9.71 15.73 -18.75 -0.29 -10.01 16 14 C -0.11 -1.09 5.81 -27.88 -0.16 -1.25 16 15 C -0.09 -0.85 4.51 -26.73 -0.12 -0.97 16 16 C -0.11 -0.75 4.33 37.16 0.16 -0.59 16 17 S -0.10 -0.80 21.92 -107.50 -2.36 -3.15 16 18 C -0.08 -0.62 6.11 -39.05 -0.24 -0.86 16 19 C -0.12 -0.86 9.36 -39.37 -0.37 -1.23 16 20 C -0.09 -0.60 9.82 -39.57 -0.39 -0.99 16 21 C -0.04 -0.32 6.32 -39.46 -0.25 -0.57 16 22 Cl -0.07 -0.49 28.95 -51.86 -1.50 -1.99 16 23 C -0.09 -0.60 9.82 -39.58 -0.39 -0.99 16 24 C -0.09 -0.64 9.79 -39.37 -0.39 -1.03 16 25 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 28 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 29 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 30 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.09 0.52 7.76 -51.92 -0.40 0.12 16 35 H 0.09 0.52 7.73 -51.92 -0.40 0.12 16 36 H 0.14 0.72 5.88 -52.49 -0.31 0.41 16 37 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 38 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 366.77 15.07 5.53 5.53 Total: -1.00 -31.68 366.77 -10.83 -42.50 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: -5.30 Total: -4.42 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -2.21 Total: -12.04 kcal Atomic # 7 Polarization: -26.13 SS G_CDS: 0.74 Total: -25.40 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.70 Total: -17.25 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -0.80 SS G_CDS: -2.36 Total: -3.15 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -1.99 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.68 -10.83 -42.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058817821.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.140 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds