Wall clock time and date at job start Tue Mar 31 2020 14:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99890 * 2 1 4 4 H 1.48498 * 109.47142 * 269.99521 * 3 2 1 5 5 H 1.48496 * 109.47396 * 30.00130 * 3 2 1 6 6 H 1.48509 * 109.46980 * 149.99860 * 3 2 1 7 7 C 1.37881 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99493 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00250 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46971 * 179.97438 * 9 7 2 11 11 O 1.45205 * 109.46854 * 179.97438 * 10 9 7 12 12 C 1.34225 * 116.99943 * 179.97438 * 11 10 9 13 13 O 1.20825 * 120.00047 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99932 * 180.02562 * 12 11 10 15 15 C 1.52996 * 109.46946 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47245 * 180.02562 * 15 14 12 17 17 S 1.81399 * 109.47445 * 179.97438 * 16 15 14 18 18 C 1.76195 * 102.99929 * 179.97438 * 17 16 15 19 19 C 1.38963 * 120.06806 * 359.72099 * 18 17 16 20 20 C 1.38090 * 119.93161 * 179.79491 * 19 18 17 21 21 C 1.38404 * 120.06325 * 0.48504 * 20 19 18 22 22 Cl 1.73597 * 119.92925 * 179.72530 * 21 20 19 23 23 C 1.38393 * 120.13612 * 359.74586 * 21 20 19 24 24 C 1.38087 * 120.06971 * 0.02562 * 23 21 20 25 25 H 0.97003 * 119.99667 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47142 * 59.98984 * 9 7 2 27 27 H 1.09009 * 109.46588 * 299.99349 * 9 7 2 28 28 H 1.08994 * 109.47300 * 59.99688 * 10 9 7 29 29 H 1.08998 * 109.46848 * 299.98963 * 10 9 7 30 30 H 1.09001 * 109.46980 * 60.00116 * 14 12 11 31 31 H 1.09004 * 109.47113 * 300.00097 * 14 12 11 32 32 H 1.09001 * 109.47372 * 60.00128 * 15 14 12 33 33 H 1.09004 * 109.47108 * 299.99872 * 15 14 12 34 34 H 1.09001 * 109.46962 * 59.99717 * 16 15 14 35 35 H 1.09004 * 109.46832 * 299.99880 * 16 15 14 36 36 H 1.08000 * 120.03345 * 0.02562 * 19 18 17 37 37 H 1.07997 * 119.96644 * 180.21255 * 20 19 18 38 38 H 1.08001 * 119.96295 * 180.02562 * 23 21 20 39 39 H 1.07996 * 120.03144 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5193 -4.9196 0.0011 12 6 2.2503 -6.0453 0.0007 13 8 3.4569 -5.9821 0.0003 14 6 1.5661 -7.3880 0.0007 15 6 2.6198 -8.4973 0.0008 16 6 1.9252 -9.8606 0.0001 17 16 3.1745 -11.1758 -0.0005 18 6 2.2027 -12.6456 -0.0005 19 6 0.8156 -12.5630 0.0059 20 6 0.0567 -13.7167 0.0017 21 6 0.6764 -14.9542 0.0012 22 17 -0.2811 -16.4023 0.0031 23 6 2.0577 -15.0396 -0.0003 24 6 2.8220 -13.8896 -0.0008 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.8720 -3.6043 0.8904 29 1 2.8718 -3.6044 -0.8895 30 1 0.9430 -7.4783 -0.8891 31 1 0.9436 -7.4786 0.8909 32 1 3.2426 -8.4069 0.8908 33 1 3.2426 -8.4069 -0.8892 34 1 1.3028 -9.9508 -0.8901 35 1 1.3021 -9.9513 0.8899 36 1 0.3315 -11.5976 0.0104 37 1 -1.0214 -13.6532 0.0031 38 1 2.5383 -16.0068 -0.0010 39 1 3.8998 -13.9569 -0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058817821.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:22 Heat of formation + Delta-G solvation = -110.248539 kcal Electronic energy + Delta-G solvation = -20853.000469 eV Core-core repulsion = 17297.153616 eV Total energy + Delta-G solvation = -3555.846853 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.44352 -40.10362 -37.88906 -37.42570 -35.69526 -35.44650 -32.42523 -32.19927 -31.80721 -29.56098 -26.99117 -24.51679 -23.80453 -23.39128 -22.71866 -21.51284 -19.09867 -18.77890 -18.10866 -17.80591 -17.69594 -17.23020 -16.54287 -16.41320 -16.41231 -15.74965 -15.24596 -15.10840 -14.62393 -14.62275 -14.40304 -14.34289 -13.63896 -13.49685 -13.14888 -13.07826 -12.86796 -12.75149 -12.72564 -12.59206 -12.56860 -12.31095 -11.93960 -11.86687 -11.84255 -11.52245 -11.45924 -11.32380 -11.17399 -10.61556 -10.50027 -10.14200 -8.42709 -8.27655 -6.40806 -0.05584 0.22216 0.38740 1.13690 1.22497 1.39066 1.41266 1.42638 1.53816 1.84231 2.40252 2.48686 3.06830 3.57449 3.72338 3.83561 3.83741 3.84840 4.14771 4.20591 4.21597 4.29129 4.34152 4.34846 4.47994 4.54392 4.62430 4.70700 4.88383 4.94788 4.97327 5.14409 5.14904 5.18725 5.28360 5.46581 5.58824 5.63383 5.75765 6.06288 6.71572 6.77912 7.29107 8.84733 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.039692 B = 0.001439 C = 0.001391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.261792 B =19450.139466 C =20119.045885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.553 4.553 8 H 0.063 0.937 9 C 0.030 3.970 10 C 0.090 3.910 11 O -0.366 6.366 12 C 0.450 3.550 13 O -0.549 6.549 14 C -0.098 4.098 15 C -0.089 4.089 16 C -0.100 4.100 17 S -0.132 6.132 18 C -0.088 4.088 19 C -0.127 4.127 20 C -0.094 4.094 21 C -0.054 4.054 22 Cl -0.071 7.071 23 C -0.094 4.094 24 C -0.099 4.099 25 H 0.268 0.732 26 H 0.007 0.993 27 H 0.008 0.992 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.178 -33.180 -0.001 33.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.192 4.192 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.591 4.591 8 H 0.082 0.918 9 C -0.007 4.007 10 C 0.017 3.983 11 O -0.283 6.283 12 C 0.295 3.705 13 O -0.440 6.440 14 C -0.137 4.137 15 C -0.127 4.127 16 C -0.248 4.248 17 S 0.114 5.886 18 C -0.201 4.201 19 C -0.151 4.151 20 C -0.114 4.114 21 C -0.083 4.083 22 Cl -0.042 7.042 23 C -0.114 4.114 24 C -0.123 4.123 25 H 0.077 0.923 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.170 0.830 37 H 0.169 0.831 38 H 0.171 0.829 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.535 -32.888 0.004 32.924 hybrid contribution -0.935 0.755 -0.010 1.202 sum 0.601 -32.133 -0.006 32.139 Atomic orbital electron populations 1.70089 1.07751 1.28261 1.50323 1.25942 0.95841 1.03333 0.94045 0.85336 0.78530 0.77844 0.78670 1.19552 1.20333 1.18844 1.21391 0.93682 0.91384 1.52596 0.91834 1.18986 0.94367 0.90630 0.96766 1.23112 0.94991 0.79400 1.00796 1.86515 1.42713 1.15917 1.83156 1.24677 0.86506 0.88110 0.71233 1.90634 1.17425 1.88665 1.47256 1.21466 0.99145 0.84333 1.08751 1.21008 0.97193 0.90302 1.04246 1.23710 0.99358 0.93624 1.08064 1.85931 1.14290 0.96500 1.91836 1.22020 0.96819 0.97471 1.03798 1.21426 0.91785 0.99913 1.01937 1.21209 1.01517 0.90065 0.98597 1.21106 0.92331 0.88127 1.06762 1.98380 1.71870 1.37022 1.96967 1.21192 0.91511 0.99861 0.98854 1.20933 1.00895 0.89857 1.00597 0.92330 0.97421 0.97405 0.92429 0.92402 0.84708 0.84712 0.91059 0.91069 0.86901 0.86890 0.82991 0.83057 0.82930 0.83686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.85 13.29 21.45 0.28 -54.57 16 2 C 0.01 0.43 5.46 84.66 0.46 0.89 16 3 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.55 -31.23 9.11 25.60 0.23 -31.00 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.42 16 9 C 0.03 1.58 5.35 29.85 0.16 1.74 16 10 C 0.09 4.01 5.40 71.98 0.39 4.39 16 11 O -0.37 -13.89 10.22 -51.37 -0.53 -14.42 16 12 C 0.45 13.94 7.96 71.24 0.57 14.50 16 13 O -0.55 -20.47 15.73 21.97 0.35 -20.12 16 14 C -0.10 -1.67 5.81 29.85 0.17 -1.50 16 15 C -0.09 -1.44 4.51 30.59 0.14 -1.30 16 16 C -0.10 -1.09 4.33 71.98 0.31 -0.78 16 17 S -0.13 -2.03 21.92 -56.49 -1.24 -3.27 16 18 C -0.09 -1.25 6.11 22.62 0.14 -1.11 16 19 C -0.13 -1.50 9.36 22.41 0.21 -1.29 16 20 C -0.09 -1.10 9.82 22.27 0.22 -0.88 16 21 C -0.05 -0.70 6.32 22.35 0.14 -0.56 16 22 Cl -0.07 -0.90 28.95 -2.72 -0.08 -0.98 16 23 C -0.09 -1.13 9.82 22.27 0.22 -0.91 16 24 C -0.10 -1.30 9.79 22.41 0.22 -1.08 16 25 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 26 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 28 H 0.06 2.54 8.13 -2.39 -0.02 2.52 16 29 H 0.06 2.55 8.13 -2.39 -0.02 2.53 16 30 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.13 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.07 1.37 8.10 -2.39 -0.02 1.35 16 33 H 0.07 1.37 8.10 -2.38 -0.02 1.35 16 34 H 0.11 0.86 7.76 -2.39 -0.02 0.84 16 35 H 0.11 0.86 7.73 -2.39 -0.02 0.84 16 36 H 0.15 1.16 5.88 -2.91 -0.02 1.14 16 37 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 38 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 39 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -69.09 366.77 5.44 -63.65 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: 1.05 Total: 3.25 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 3.58 Total: -18.88 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.28 Total: -54.57 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -0.18 Total: -34.54 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -2.03 SS G_CDS: -1.24 Total: -3.27 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.98 kcal Total: -69.09 5.44 -63.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058817821.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.599 kcal (2) G-P(sol) polarization free energy of solvation -69.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds