Wall clock time and date at job start Tue Mar 31 2020 15:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47234 * 2 1 4 4 S 1.81396 * 109.47260 * 120.00273 * 2 1 3 5 5 C 1.76206 * 102.99703 * 289.88585 * 4 2 1 6 6 C 1.38937 * 120.08445 * 354.46350 * 5 4 2 7 7 C 1.38098 * 119.93254 * 179.76862 * 6 5 4 8 8 C 1.38311 * 120.09849 * 0.52334 * 7 6 5 9 9 C 1.38290 * 120.16720 * 359.70487 * 8 7 6 10 10 C 1.38188 * 120.06449 * 0.03946 * 9 8 7 11 11 Cl 1.73603 * 120.05008 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47002 * 239.99961 * 2 1 3 13 13 O 1.20827 * 120.00147 * 265.00320 * 12 2 1 14 14 O 1.34234 * 120.00138 * 84.72127 * 12 2 1 15 15 C 1.45197 * 117.00428 * 180.27421 * 14 12 2 16 16 C 1.52992 * 109.47420 * 180.02562 * 15 14 12 17 17 C 1.53003 * 109.47347 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47062 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00256 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99958 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00008 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99725 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47349 * 90.00253 * 22 20 18 24 24 H 1.48503 * 109.46900 * 210.00267 * 22 20 18 25 25 H 1.48499 * 109.47145 * 330.00125 * 22 20 18 26 26 H 1.09002 * 109.47023 * 294.54005 * 1 2 3 27 27 H 1.09004 * 109.47250 * 54.53529 * 1 2 3 28 28 H 1.08997 * 109.47511 * 174.54166 * 1 2 3 29 29 H 1.07997 * 120.03647 * 359.97438 * 6 5 4 30 30 H 1.08000 * 119.95369 * 180.22915 * 7 6 5 31 31 H 1.07997 * 119.91878 * 179.72446 * 8 7 6 32 32 H 1.08001 * 119.96443 * 180.02562 * 9 8 7 33 33 H 1.09004 * 109.47246 * 300.00644 * 15 14 12 34 34 H 1.08997 * 109.46842 * 60.00241 * 15 14 12 35 35 H 1.09004 * 109.47026 * 300.00276 * 16 15 14 36 36 H 1.08997 * 109.47327 * 60.00035 * 16 15 14 37 37 H 1.09000 * 109.46732 * 299.99557 * 17 16 15 38 38 H 1.08997 * 109.47142 * 59.99598 * 17 16 15 39 39 H 0.97006 * 119.99950 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1347 -0.8552 1.4810 5 6 1.7162 0.2588 2.7805 6 6 1.1786 1.5051 2.4834 7 6 0.8473 2.3738 3.5045 8 6 1.0599 2.0094 4.8217 9 6 1.5991 0.7718 5.1219 10 6 1.9282 -0.1049 4.1058 11 17 2.6057 -1.6581 4.4831 12 6 2.0323 -0.7104 -1.2305 13 8 2.3196 -1.8828 -1.1762 14 8 2.1551 -0.0422 -2.3881 15 6 2.6392 -0.7915 -3.5337 16 6 2.7130 0.1307 -4.7522 17 6 3.2225 -0.6592 -5.9595 18 6 3.2945 0.2491 -7.1599 19 1 3.0055 1.2859 -7.0708 20 6 3.7286 -0.2437 -8.3723 21 7 3.7910 0.5488 -9.4199 22 14 4.2279 -2.0371 -8.5266 23 1 3.0433 -2.8503 -8.9017 24 1 5.2724 -2.1718 -9.5737 25 1 4.7651 -2.5150 -7.2273 26 1 -0.3633 0.4268 0.9349 27 1 -0.3634 0.5963 -0.8370 28 1 -0.3634 -1.0229 -0.0977 29 1 1.0169 1.7928 1.4551 30 1 0.4260 3.3412 3.2741 31 1 0.8039 2.6928 5.6177 32 1 1.7633 0.4904 6.1516 33 1 3.6318 -1.1864 -3.3166 34 1 1.9579 -1.6163 -3.7426 35 1 1.7206 0.5258 -4.9695 36 1 3.3945 0.9552 -4.5432 37 1 4.2148 -1.0545 -5.7425 38 1 2.5406 -1.4835 -6.1685 39 1 4.0967 0.2021 -10.2728 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062404297.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:34 Heat of formation + Delta-G solvation = -78.959557 kcal Electronic energy + Delta-G solvation = -21824.000772 eV Core-core repulsion = 18269.510712 eV Total energy + Delta-G solvation = -3554.490061 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.53058 -39.59774 -36.88356 -36.76292 -34.31628 -33.89909 -31.88491 -31.46524 -31.13553 -27.78385 -25.42137 -23.51196 -23.42694 -22.91560 -21.05507 -20.28396 -18.71582 -17.77895 -17.03087 -16.87704 -16.63078 -16.24908 -15.80858 -15.39210 -14.71274 -14.55875 -14.29225 -14.20156 -14.18236 -13.44351 -13.28311 -12.87328 -12.78181 -12.51432 -12.30037 -12.14009 -11.99979 -11.91994 -11.85076 -11.35230 -11.11978 -11.03272 -10.71257 -10.53175 -10.40827 -10.29244 -10.06515 -9.87370 -9.77042 -9.32538 -9.28880 -8.59795 -7.86280 -6.10020 -4.09364 0.54613 0.66813 0.72118 1.60314 1.89606 2.08724 2.61167 3.04059 3.27821 3.35732 3.38918 4.17132 4.26293 4.38321 4.40308 4.42752 4.54724 4.72950 4.77914 4.93485 5.10392 5.19020 5.23026 5.26355 5.37163 5.38562 5.50644 5.61940 5.65856 5.77388 5.87232 6.19306 6.20084 6.31968 6.54314 6.72317 7.15716 7.27445 7.59876 7.71113 8.46064 8.93842 9.51303 11.03012 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.027363 B = 0.002074 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.046782 B =13500.478935 C =14179.530372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.102 4.102 3 H 0.127 0.873 4 S -0.006 6.006 5 C -0.093 4.093 6 C -0.127 4.127 7 C -0.093 4.093 8 C -0.115 4.115 9 C -0.091 4.091 10 C -0.022 4.022 11 Cl -0.052 7.052 12 C 0.481 3.519 13 O -0.491 6.491 14 O -0.348 6.348 15 C 0.066 3.934 16 C -0.101 4.101 17 C -0.011 4.011 18 C -0.522 4.522 19 H 0.074 0.926 20 C 0.067 3.933 21 N -0.901 5.901 22 Si 0.879 3.121 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.265 1.265 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.020 0.980 38 H 0.015 0.985 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.716 2.259 32.023 33.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.231 4.231 3 H 0.145 0.855 4 S 0.241 5.759 5 C -0.207 4.207 6 C -0.152 4.152 7 C -0.113 4.113 8 C -0.137 4.137 9 C -0.111 4.111 10 C -0.056 4.056 11 Cl -0.023 7.023 12 C 0.321 3.679 13 O -0.378 6.378 14 O -0.264 6.264 15 C -0.007 4.007 16 C -0.139 4.139 17 C -0.048 4.048 18 C -0.560 4.560 19 H 0.092 0.908 20 C -0.134 4.134 21 N -0.539 5.539 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.190 1.190 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.038 0.962 38 H 0.033 0.967 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.925 0.619 31.726 32.479 hybrid contribution -0.191 0.151 -0.323 0.404 sum -7.116 0.769 31.403 32.208 Atomic orbital electron populations 1.22106 0.89256 1.04939 1.04312 1.23311 1.02059 1.04451 0.93304 0.85458 1.86488 1.72821 1.23059 0.93580 1.21929 1.03828 0.98753 0.96155 1.21279 1.00883 0.92380 1.00611 1.21200 0.98161 0.99473 0.92447 1.21175 0.99497 0.96007 0.96977 1.21035 0.98304 0.93255 0.98553 1.20395 1.03471 0.89349 0.92374 1.98398 1.83281 1.26505 1.94082 1.22266 0.75249 0.85769 0.84600 1.90716 1.45298 1.16585 1.85189 1.86484 1.76906 1.44471 1.18524 1.23616 0.99273 0.95432 0.82406 1.21577 1.02589 0.98319 0.91397 1.19524 0.96087 0.96187 0.92998 1.21035 1.44733 0.97914 0.92352 0.90790 1.25019 0.94948 0.97743 0.95716 1.69905 1.47426 1.35703 1.00875 0.86784 0.78746 0.85621 0.78195 1.20186 1.21243 1.18971 0.90212 0.89822 0.90278 0.84595 0.84851 0.84765 0.84422 0.91198 0.91224 0.91452 0.91414 0.96219 0.96668 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.69 37.16 0.32 -0.88 16 2 C -0.10 -1.05 2.50 -27.89 -0.07 -1.12 16 3 H 0.13 1.06 6.85 -51.93 -0.36 0.70 16 4 S -0.01 -0.06 19.52 -107.50 -2.10 -2.16 16 5 C -0.09 -0.87 5.98 -39.02 -0.23 -1.10 16 6 C -0.13 -0.94 8.04 -39.37 -0.32 -1.26 16 7 C -0.09 -0.54 10.04 -39.61 -0.40 -0.94 16 8 C -0.12 -0.64 10.04 -39.54 -0.40 -1.03 16 9 C -0.09 -0.62 9.82 -39.58 -0.39 -1.01 16 10 C -0.02 -0.20 6.34 -39.30 -0.25 -0.45 16 11 Cl -0.05 -0.50 27.84 -51.86 -1.44 -1.94 16 12 C 0.48 6.83 7.08 36.00 0.25 7.09 16 13 O -0.49 -8.33 15.89 -18.75 -0.30 -8.63 16 14 O -0.35 -5.31 10.22 -39.27 -0.40 -5.71 16 15 C 0.07 1.11 5.47 37.15 0.20 1.31 16 16 C -0.10 -1.95 5.53 -26.73 -0.15 -2.10 16 17 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 18 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 19 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 20 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 21 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 22 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 26 H 0.08 0.52 6.10 -51.93 -0.32 0.21 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.14 0.83 4.97 -52.49 -0.26 0.57 16 30 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 31 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 32 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 34 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 38 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 356.34 15.07 5.37 5.37 Total: -1.00 -32.32 356.34 -9.82 -42.14 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: -5.09 Total: -4.21 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -1.96 Total: -15.00 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.77 Total: -26.74 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.70 Total: -14.34 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.10 Total: -2.16 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.44 Total: -1.94 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.32 -9.82 -42.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062404297.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.817 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds