Wall clock time and date at job start Tue Mar 31 2020 15:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47234 * 2 1 4 4 S 1.81396 * 109.47260 * 120.00273 * 2 1 3 5 5 C 1.76206 * 102.99703 * 289.88585 * 4 2 1 6 6 C 1.38937 * 120.08445 * 354.46350 * 5 4 2 7 7 C 1.38098 * 119.93254 * 179.76862 * 6 5 4 8 8 C 1.38311 * 120.09849 * 0.52334 * 7 6 5 9 9 C 1.38290 * 120.16720 * 359.70487 * 8 7 6 10 10 C 1.38188 * 120.06449 * 0.03946 * 9 8 7 11 11 Cl 1.73603 * 120.05008 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47002 * 239.99961 * 2 1 3 13 13 O 1.20827 * 120.00147 * 265.00320 * 12 2 1 14 14 O 1.34234 * 120.00138 * 84.72127 * 12 2 1 15 15 C 1.45197 * 117.00428 * 180.27421 * 14 12 2 16 16 C 1.52992 * 109.47420 * 180.02562 * 15 14 12 17 17 C 1.53003 * 109.47347 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47062 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00256 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99958 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00008 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99725 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47349 * 90.00253 * 22 20 18 24 24 H 1.48503 * 109.46900 * 210.00267 * 22 20 18 25 25 H 1.48499 * 109.47145 * 330.00125 * 22 20 18 26 26 H 1.09002 * 109.47023 * 294.54005 * 1 2 3 27 27 H 1.09004 * 109.47250 * 54.53529 * 1 2 3 28 28 H 1.08997 * 109.47511 * 174.54166 * 1 2 3 29 29 H 1.07997 * 120.03647 * 359.97438 * 6 5 4 30 30 H 1.08000 * 119.95369 * 180.22915 * 7 6 5 31 31 H 1.07997 * 119.91878 * 179.72446 * 8 7 6 32 32 H 1.08001 * 119.96443 * 180.02562 * 9 8 7 33 33 H 1.09004 * 109.47246 * 300.00644 * 15 14 12 34 34 H 1.08997 * 109.46842 * 60.00241 * 15 14 12 35 35 H 1.09004 * 109.47026 * 300.00276 * 16 15 14 36 36 H 1.08997 * 109.47327 * 60.00035 * 16 15 14 37 37 H 1.09000 * 109.46732 * 299.99557 * 17 16 15 38 38 H 1.08997 * 109.47142 * 59.99598 * 17 16 15 39 39 H 0.97006 * 119.99950 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1347 -0.8552 1.4810 5 6 1.7162 0.2588 2.7805 6 6 1.1786 1.5051 2.4834 7 6 0.8473 2.3738 3.5045 8 6 1.0599 2.0094 4.8217 9 6 1.5991 0.7718 5.1219 10 6 1.9282 -0.1049 4.1058 11 17 2.6057 -1.6581 4.4831 12 6 2.0323 -0.7104 -1.2305 13 8 2.3196 -1.8828 -1.1762 14 8 2.1551 -0.0422 -2.3881 15 6 2.6392 -0.7915 -3.5337 16 6 2.7130 0.1307 -4.7522 17 6 3.2225 -0.6592 -5.9595 18 6 3.2945 0.2491 -7.1599 19 1 3.0055 1.2859 -7.0708 20 6 3.7286 -0.2437 -8.3723 21 7 3.7910 0.5488 -9.4199 22 14 4.2279 -2.0371 -8.5266 23 1 3.0433 -2.8503 -8.9017 24 1 5.2724 -2.1718 -9.5737 25 1 4.7651 -2.5150 -7.2273 26 1 -0.3633 0.4268 0.9349 27 1 -0.3634 0.5963 -0.8370 28 1 -0.3634 -1.0229 -0.0977 29 1 1.0169 1.7928 1.4551 30 1 0.4260 3.3412 3.2741 31 1 0.8039 2.6928 5.6177 32 1 1.7633 0.4904 6.1516 33 1 3.6318 -1.1864 -3.3166 34 1 1.9579 -1.6163 -3.7426 35 1 1.7206 0.5258 -4.9695 36 1 3.3945 0.9552 -4.5432 37 1 4.2148 -1.0545 -5.7425 38 1 2.5406 -1.4835 -6.1685 39 1 4.0967 0.2021 -10.2728 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062404297.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:33 Heat of formation + Delta-G solvation = -95.284843 kcal Electronic energy + Delta-G solvation = -21824.708690 eV Core-core repulsion = 18269.510712 eV Total energy + Delta-G solvation = -3555.197978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.71696 -40.11627 -38.05712 -37.50157 -35.98485 -34.88383 -33.82218 -32.03486 -31.65023 -29.52893 -26.43972 -24.74461 -24.00086 -23.81246 -22.21302 -21.93901 -19.49784 -19.09325 -18.65668 -17.87284 -17.64022 -17.21104 -16.56412 -16.28455 -15.99576 -15.92443 -15.19451 -15.06133 -14.85111 -14.76711 -14.46324 -14.29924 -13.83672 -13.68244 -13.49734 -13.22396 -12.88072 -12.65720 -12.61620 -12.57148 -12.47177 -12.17360 -12.07046 -11.93156 -11.78786 -11.56179 -11.44073 -11.37657 -11.11688 -10.87797 -10.78435 -9.86505 -8.62039 -8.31092 -6.35903 -0.10074 0.02596 0.16525 0.86044 1.01435 1.27712 1.36024 1.37752 1.49022 1.52915 2.34600 2.54923 3.04066 3.32394 3.52644 3.65444 3.78377 3.96518 3.97385 4.02627 4.28162 4.33080 4.33976 4.41622 4.49268 4.57556 4.69002 4.71374 4.77640 4.93772 5.00132 5.02117 5.21218 5.23101 5.40746 5.44502 5.47029 5.60914 5.76047 6.24466 6.45467 6.71880 7.28523 8.85228 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.027363 B = 0.002074 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.046782 B =13500.478935 C =14179.530372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 H 0.149 0.851 4 S -0.061 6.061 5 C -0.103 4.103 6 C -0.132 4.132 7 C -0.091 4.091 8 C -0.107 4.107 9 C -0.096 4.096 10 C -0.041 4.041 11 Cl -0.069 7.069 12 C 0.481 3.519 13 O -0.521 6.521 14 O -0.347 6.347 15 C 0.074 3.926 16 C -0.091 4.091 17 C -0.010 4.010 18 C -0.533 4.533 19 H 0.037 0.963 20 C 0.005 3.995 21 N -0.948 5.948 22 Si 0.948 3.052 23 H -0.266 1.266 24 H -0.284 1.284 25 H -0.247 1.247 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.148 0.852 30 H 0.163 0.837 31 H 0.166 0.834 32 H 0.154 0.846 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.024 0.976 38 H 0.025 0.975 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.589 2.671 34.134 35.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.216 4.216 3 H 0.167 0.833 4 S 0.184 5.816 5 C -0.217 4.217 6 C -0.156 4.156 7 C -0.110 4.110 8 C -0.128 4.128 9 C -0.116 4.116 10 C -0.074 4.074 11 Cl -0.040 7.040 12 C 0.322 3.678 13 O -0.410 6.410 14 O -0.263 6.263 15 C 0.000 4.000 16 C -0.129 4.129 17 C -0.048 4.048 18 C -0.571 4.571 19 H 0.055 0.945 20 C -0.192 4.192 21 N -0.589 5.589 22 Si 0.772 3.228 23 H -0.191 1.191 24 H -0.209 1.209 25 H -0.171 1.171 26 H 0.117 0.883 27 H 0.114 0.886 28 H 0.086 0.914 29 H 0.166 0.834 30 H 0.180 0.820 31 H 0.183 0.817 32 H 0.171 0.829 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.813 1.049 33.874 34.779 hybrid contribution 0.027 0.193 -0.876 0.898 sum -7.785 1.242 32.998 33.927 Atomic orbital electron populations 1.22133 0.87452 1.04720 1.05835 1.23317 1.03202 1.04542 0.90553 0.83293 1.86643 1.74101 1.25310 0.95540 1.21852 1.05554 0.99125 0.95142 1.21520 1.00486 0.91757 1.01843 1.21597 0.97111 1.00199 0.92106 1.21603 0.97656 0.95607 0.97902 1.21330 0.97994 0.93452 0.98853 1.20645 1.04527 0.89254 0.92983 1.98386 1.83673 1.27837 1.94129 1.22992 0.74221 0.85622 0.84926 1.90704 1.46646 1.18079 1.85549 1.86467 1.76946 1.44272 1.18649 1.23291 0.99672 0.94723 0.82275 1.21322 1.02249 0.98102 0.91224 1.19457 0.96765 0.95892 0.92660 1.21387 1.44031 0.97216 0.94430 0.94451 1.25993 0.95065 1.02858 0.95305 1.70054 1.48982 1.38163 1.01660 0.85686 0.78733 0.79486 0.78943 1.19057 1.20946 1.17066 0.88319 0.88579 0.91371 0.83441 0.81964 0.81661 0.82851 0.91109 0.90730 0.91462 0.91700 0.95732 0.95696 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.69 71.98 0.63 -1.43 16 2 C -0.09 -1.67 2.50 29.85 0.07 -1.60 16 3 H 0.15 2.16 6.85 -2.39 -0.02 2.14 16 4 S -0.06 -1.36 19.52 -56.49 -1.10 -2.46 16 5 C -0.10 -1.81 5.98 22.63 0.14 -1.67 16 6 C -0.13 -1.61 8.04 22.40 0.18 -1.43 16 7 C -0.09 -0.71 10.04 22.25 0.22 -0.49 16 8 C -0.11 -0.79 10.04 22.30 0.22 -0.57 16 9 C -0.10 -1.10 9.82 22.27 0.22 -0.88 16 10 C -0.04 -0.70 6.34 22.45 0.14 -0.56 16 11 Cl -0.07 -1.35 27.84 -2.72 -0.08 -1.42 16 12 C 0.48 13.22 7.08 71.24 0.50 13.73 16 13 O -0.52 -17.60 15.89 21.96 0.35 -17.25 16 14 O -0.35 -10.14 10.22 -51.45 -0.53 -10.67 16 15 C 0.07 2.40 5.47 71.98 0.39 2.79 16 16 C -0.09 -3.45 5.53 30.59 0.17 -3.28 16 17 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 18 C -0.53 -30.33 9.66 25.60 0.25 -30.08 16 19 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 20 C 0.00 0.29 5.47 84.66 0.46 0.75 16 21 N -0.95 -59.10 13.96 21.45 0.30 -58.80 16 22 Si 0.95 43.96 27.47 68.60 1.88 45.84 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 25 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 26 H 0.10 1.06 6.10 -2.39 -0.01 1.04 16 27 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.15 1.35 4.97 -2.91 -0.01 1.33 16 30 H 0.16 0.35 8.06 -2.91 -0.02 0.32 16 31 H 0.17 0.19 8.06 -2.91 -0.02 0.17 16 32 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 33 H 0.07 2.29 8.13 -2.38 -0.02 2.27 16 34 H 0.07 2.36 8.13 -2.39 -0.02 2.34 16 35 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 36 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 38 H 0.02 1.09 7.57 -2.39 -0.02 1.07 16 39 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 Total: -1.00 -71.56 356.34 5.55 -66.01 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: 1.00 Total: 3.83 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 3.72 Total: -25.07 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.30 Total: -58.80 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.18 Total: -27.91 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.84 kcal Atomic # 16 Polarization: -1.36 SS G_CDS: -1.10 Total: -2.46 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.08 Total: -1.42 kcal Total: -71.56 5.55 -66.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062404297.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.277 kcal (2) G-P(sol) polarization free energy of solvation -71.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds