Wall clock time and date at job start Tue Mar 31 2020 15:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34657 * 117.00093 * 2 1 4 4 O 1.21513 * 119.99870 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99966 * 180.02562 * 3 2 1 6 6 C 1.40076 * 119.99773 * 185.80516 * 5 3 2 7 7 C 1.38710 * 120.04179 * 19.63312 * 6 5 3 8 8 C 1.38751 * 119.88085 * 179.97438 * 7 6 5 9 9 N 1.40032 * 120.00970 * 179.97438 * 8 7 6 10 10 C 1.34778 * 119.99860 * 145.89969 * 9 8 7 11 11 O 1.21294 * 120.00005 * 355.00830 * 10 9 8 12 12 C 1.50695 * 119.99837 * 174.99928 * 10 9 8 13 13 S 1.81003 * 109.46810 * 180.02562 * 12 10 9 14 14 C 1.76206 * 99.99881 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99827 * 0.02562 * 14 13 12 16 16 C 1.38801 * 120.00030 * 179.97438 * 14 13 12 17 17 N 1.31633 * 119.99789 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 119.99859 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47039 * 90.00283 * 18 16 14 20 20 H 1.48497 * 109.47112 * 209.99780 * 18 16 14 21 21 H 1.48497 * 109.47371 * 329.99935 * 18 16 14 22 22 C 1.38889 * 119.97460 * 0.02562 * 8 7 6 23 23 C 1.38180 * 120.08361 * 0.02562 * 22 8 7 24 24 C 1.38328 * 120.11215 * 359.97438 * 23 22 8 25 25 F 1.35105 * 119.98476 * 180.28168 * 24 23 22 26 26 H 1.09004 * 109.47106 * 300.00271 * 1 2 3 27 27 H 1.09001 * 109.46712 * 60.00084 * 1 2 3 28 28 H 1.08996 * 109.47007 * 180.02562 * 1 2 3 29 29 H 0.96997 * 119.99932 * 5.80050 * 5 3 2 30 30 H 1.07994 * 120.05537 * 359.95710 * 7 6 5 31 31 H 0.96998 * 120.00278 * 325.90731 * 9 8 7 32 32 H 1.09002 * 109.47654 * 300.00386 * 12 10 9 33 33 H 1.09002 * 109.47260 * 60.00730 * 12 10 9 34 34 H 0.96996 * 119.99502 * 179.97438 * 17 16 14 35 35 H 1.08000 * 119.95728 * 180.02562 * 22 8 7 36 36 H 1.07999 * 119.94655 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1998 0.0000 4 8 1.4016 2.2189 -0.0005 5 7 3.4093 1.2703 -0.0005 6 6 4.0456 2.5122 0.1222 7 6 3.3558 3.5975 0.6421 8 6 3.9895 4.8259 0.7626 9 7 3.2955 5.9235 1.2866 10 6 3.9469 6.8407 2.0290 11 8 5.1121 6.6695 2.3192 12 6 3.2276 8.0789 2.4982 13 16 4.3624 9.1064 3.4640 14 6 3.2909 10.4438 3.8737 15 1 2.2666 10.4395 3.5312 16 6 3.7629 11.5023 4.6375 17 7 2.9625 12.5017 4.9431 18 14 5.5342 11.5093 5.2304 19 1 6.3916 12.1803 4.2206 20 1 5.6219 12.2417 6.5193 21 1 5.9973 10.1116 5.4229 22 6 5.3120 4.9668 0.3624 23 6 5.9976 3.8850 -0.1563 24 6 5.3693 2.6587 -0.2781 25 9 6.0438 1.6013 -0.7803 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.9373 0.4611 -0.0858 30 1 2.3273 3.4865 0.9522 31 1 2.3460 6.0238 1.1154 32 1 2.8730 8.6424 1.6351 33 1 2.3785 7.7927 3.1190 34 1 3.2922 13.2412 5.4772 35 1 5.8051 5.9230 0.4567 36 1 7.0258 3.9971 -0.4672 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066488600.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:53 Heat of formation + Delta-G solvation = -117.763926 kcal Electronic energy + Delta-G solvation = -24275.154666 eV Core-core repulsion = 20187.105203 eV Total energy + Delta-G solvation = -4088.049463 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.12747 -41.39734 -40.34105 -38.69875 -37.04400 -35.59372 -34.32702 -32.48121 -30.68094 -30.29931 -28.39194 -27.74739 -25.66195 -24.04120 -22.99008 -21.98073 -20.45342 -19.60725 -18.35921 -17.99541 -17.78096 -17.13198 -17.00580 -16.72238 -16.24152 -15.86033 -15.62464 -15.05934 -14.93331 -14.51731 -14.31449 -14.07600 -14.02750 -13.65933 -13.45765 -13.16025 -12.84395 -12.83564 -12.56824 -12.30083 -11.93442 -11.38416 -11.31683 -11.26139 -11.04523 -10.71576 -10.67075 -10.16462 -9.90584 -9.69443 -9.04525 -8.73683 -8.58203 -8.08231 -6.98514 -6.32880 -4.05894 0.79603 0.96023 1.52335 2.24951 2.59319 2.70279 3.14026 3.30050 3.46468 3.46817 3.53073 3.64936 3.92162 4.28841 4.50084 4.60242 4.66868 4.76513 4.90562 4.96522 4.99277 5.04617 5.06142 5.16729 5.36708 5.64385 5.68390 5.73307 5.87453 5.91306 6.05147 6.14827 6.28259 6.74468 6.77165 7.32782 7.67987 7.90056 8.19722 8.37919 9.12815 10.76279 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020414 B = 0.002490 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.272366 B =11242.055688 C =12397.253036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.367 6.367 3 C 0.651 3.349 4 O -0.547 6.547 5 N -0.642 5.642 6 C 0.149 3.851 7 C -0.146 4.146 8 C 0.177 3.823 9 N -0.676 5.676 10 C 0.532 3.468 11 O -0.496 6.496 12 C -0.125 4.125 13 S -0.138 6.138 14 C -0.523 4.523 15 H 0.089 0.911 16 C 0.096 3.904 17 N -0.879 5.879 18 Si 0.857 3.143 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.235 1.235 22 C -0.111 4.111 23 C -0.105 4.105 24 C 0.046 3.954 25 F -0.140 7.140 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.106 0.894 29 H 0.422 0.578 30 H 0.168 0.832 31 H 0.415 0.585 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.271 0.729 35 H 0.150 0.850 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.924 -25.664 -12.511 28.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.280 6.280 3 C 0.405 3.595 4 O -0.435 6.435 5 N -0.292 5.292 6 C 0.054 3.946 7 C -0.168 4.168 8 C 0.080 3.920 9 N -0.323 5.323 10 C 0.319 3.681 11 O -0.369 6.369 12 C -0.276 4.276 13 S 0.089 5.911 14 C -0.670 4.670 15 H 0.107 0.893 16 C -0.113 4.113 17 N -0.515 5.515 18 Si 0.681 3.319 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.159 1.159 22 C -0.132 4.132 23 C -0.125 4.125 24 C 0.024 3.976 25 F -0.119 7.119 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.125 0.875 29 H 0.259 0.741 30 H 0.185 0.815 31 H 0.251 0.749 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.081 0.919 35 H 0.168 0.832 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.475 -25.331 -11.904 27.992 hybrid contribution -1.013 -0.069 -0.193 1.033 sum -1.487 -25.399 -12.097 28.172 Atomic orbital electron populations 1.23317 0.73403 1.03977 1.03229 1.86258 1.24914 1.30259 1.86609 1.18016 0.82735 0.82609 0.76156 1.90943 1.64461 1.34243 1.53838 1.41732 1.03874 1.09251 1.74308 1.17085 0.90590 0.85264 1.01665 1.21226 1.03352 0.89508 1.02757 1.17583 0.92373 0.86904 0.95123 1.43668 1.13495 1.22828 1.52294 1.20538 0.87375 0.83581 0.76560 1.90724 1.16328 1.76054 1.53771 1.23293 1.03672 0.96017 1.04587 1.84800 1.18236 1.22260 1.65846 1.22295 0.99880 1.05254 1.39600 0.89260 1.24716 0.98175 0.94078 0.94336 1.69936 1.35905 1.08867 1.36795 0.86736 0.84638 0.81240 0.79242 1.19163 1.19895 1.15913 1.21145 0.93690 1.00298 0.98042 1.20845 1.00997 0.90231 1.00444 1.17177 0.89569 0.85523 1.05364 1.91465 1.79837 1.55087 1.85515 0.91359 0.91415 0.87543 0.74108 0.81481 0.74876 0.87851 0.87963 0.91873 0.83236 0.83652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.29 10.56 101.05 1.07 1.35 16 2 O -0.37 -2.96 10.62 -40.37 -0.43 -3.39 16 3 C 0.65 6.58 8.59 54.05 0.46 7.04 16 4 O -0.55 -6.74 13.04 -19.28 -0.25 -6.99 16 5 N -0.64 -5.91 5.35 -14.22 -0.08 -5.99 16 6 C 0.15 1.65 6.51 -83.61 -0.54 1.11 16 7 C -0.15 -1.75 8.70 -39.22 -0.34 -2.09 16 8 C 0.18 2.28 6.26 -83.68 -0.52 1.76 16 9 N -0.68 -8.70 5.34 -9.86 -0.05 -8.76 16 10 C 0.53 8.87 7.58 -10.99 -0.08 8.78 16 11 O -0.50 -9.82 13.59 5.55 0.08 -9.75 16 12 C -0.13 -2.27 6.16 36.00 0.22 -2.05 16 13 S -0.14 -3.35 18.55 -107.50 -1.99 -5.34 16 14 C -0.52 -14.68 10.04 30.94 0.31 -14.37 16 15 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 16 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 17 N -0.88 -26.14 13.97 55.49 0.78 -25.37 16 18 Si 0.86 21.35 27.74 -169.99 -4.72 16.64 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 22 C -0.11 -1.42 8.65 -39.36 -0.34 -1.76 16 23 C -0.11 -1.15 10.01 -39.57 -0.40 -1.54 16 24 C 0.05 0.50 7.31 -39.24 -0.29 0.21 16 25 F -0.14 -1.42 16.74 2.25 0.04 -1.38 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.42 2.88 8.46 -40.82 -0.35 2.54 16 30 H 0.17 2.06 5.42 -52.49 -0.28 1.77 16 31 H 0.41 4.14 8.82 -40.82 -0.36 3.78 16 32 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 33 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 34 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.15 2.12 6.46 -52.49 -0.34 1.78 16 36 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 336.03 15.07 5.06 5.06 Total: -1.00 -34.08 336.03 -5.55 -39.64 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -3.44 Total: 4.54 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -0.55 Total: 1.09 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.65 Total: -40.11 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.60 Total: -20.13 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.72 Total: 16.64 kcal Atomic # 16 Polarization: -3.35 SS G_CDS: -1.99 Total: -5.34 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.08 -5.55 -39.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066488600.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.125 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds