Wall clock time and date at job start Tue Mar 31 2020 15:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34657 * 117.00093 * 2 1 4 4 O 1.21513 * 119.99870 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99966 * 180.02562 * 3 2 1 6 6 C 1.40076 * 119.99773 * 185.80516 * 5 3 2 7 7 C 1.38710 * 120.04179 * 19.63312 * 6 5 3 8 8 C 1.38751 * 119.88085 * 179.97438 * 7 6 5 9 9 N 1.40032 * 120.00970 * 179.97438 * 8 7 6 10 10 C 1.34778 * 119.99860 * 145.89969 * 9 8 7 11 11 O 1.21294 * 120.00005 * 355.00830 * 10 9 8 12 12 C 1.50695 * 119.99837 * 174.99928 * 10 9 8 13 13 S 1.81003 * 109.46810 * 180.02562 * 12 10 9 14 14 C 1.76206 * 99.99881 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99827 * 0.02562 * 14 13 12 16 16 C 1.38801 * 120.00030 * 179.97438 * 14 13 12 17 17 N 1.31633 * 119.99789 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 119.99859 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47039 * 90.00283 * 18 16 14 20 20 H 1.48497 * 109.47112 * 209.99780 * 18 16 14 21 21 H 1.48497 * 109.47371 * 329.99935 * 18 16 14 22 22 C 1.38889 * 119.97460 * 0.02562 * 8 7 6 23 23 C 1.38180 * 120.08361 * 0.02562 * 22 8 7 24 24 C 1.38328 * 120.11215 * 359.97438 * 23 22 8 25 25 F 1.35105 * 119.98476 * 180.28168 * 24 23 22 26 26 H 1.09004 * 109.47106 * 300.00271 * 1 2 3 27 27 H 1.09001 * 109.46712 * 60.00084 * 1 2 3 28 28 H 1.08996 * 109.47007 * 180.02562 * 1 2 3 29 29 H 0.96997 * 119.99932 * 5.80050 * 5 3 2 30 30 H 1.07994 * 120.05537 * 359.95710 * 7 6 5 31 31 H 0.96998 * 120.00278 * 325.90731 * 9 8 7 32 32 H 1.09002 * 109.47654 * 300.00386 * 12 10 9 33 33 H 1.09002 * 109.47260 * 60.00730 * 12 10 9 34 34 H 0.96996 * 119.99502 * 179.97438 * 17 16 14 35 35 H 1.08000 * 119.95728 * 180.02562 * 22 8 7 36 36 H 1.07999 * 119.94655 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1998 0.0000 4 8 1.4016 2.2189 -0.0005 5 7 3.4093 1.2703 -0.0005 6 6 4.0456 2.5122 0.1222 7 6 3.3558 3.5975 0.6421 8 6 3.9895 4.8259 0.7626 9 7 3.2955 5.9235 1.2866 10 6 3.9469 6.8407 2.0290 11 8 5.1121 6.6695 2.3192 12 6 3.2276 8.0789 2.4982 13 16 4.3624 9.1064 3.4640 14 6 3.2909 10.4438 3.8737 15 1 2.2666 10.4395 3.5312 16 6 3.7629 11.5023 4.6375 17 7 2.9625 12.5017 4.9431 18 14 5.5342 11.5093 5.2304 19 1 6.3916 12.1803 4.2206 20 1 5.6219 12.2417 6.5193 21 1 5.9973 10.1116 5.4229 22 6 5.3120 4.9668 0.3624 23 6 5.9976 3.8850 -0.1563 24 6 5.3693 2.6587 -0.2781 25 9 6.0438 1.6013 -0.7803 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.9373 0.4611 -0.0858 30 1 2.3273 3.4865 0.9522 31 1 2.3460 6.0238 1.1154 32 1 2.8730 8.6424 1.6351 33 1 2.3785 7.7927 3.1190 34 1 3.2922 13.2412 5.4772 35 1 5.8051 5.9230 0.4567 36 1 7.0258 3.9971 -0.4672 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066488600.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:53 Heat of formation + Delta-G solvation = -142.287324 kcal Electronic energy + Delta-G solvation = -24276.218080 eV Core-core repulsion = 20187.105203 eV Total energy + Delta-G solvation = -4089.112877 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.97206 -42.21055 -41.43470 -39.68209 -37.83989 -36.52144 -35.39168 -34.66410 -31.84340 -31.27945 -29.46488 -28.34278 -27.84020 -24.89526 -24.00298 -22.84032 -21.58564 -20.45216 -19.88433 -19.19420 -18.66318 -18.23356 -17.83509 -17.74187 -17.25333 -17.07562 -16.75169 -16.68661 -16.20488 -15.69755 -15.19300 -15.12793 -15.05140 -14.85920 -14.76502 -14.42726 -14.17945 -13.78158 -13.58845 -13.33852 -13.04045 -13.00793 -12.80400 -12.69410 -12.25358 -11.91818 -11.86672 -11.56641 -11.27661 -11.16206 -10.96182 -10.54961 -9.64738 -9.06807 -8.96863 -8.50806 -6.21814 -0.14586 0.04857 0.82403 0.95623 1.32713 1.34244 1.45539 1.53455 1.54777 2.02297 2.25477 2.52815 2.68090 2.87648 2.97021 3.03736 3.59135 3.70952 4.01197 4.07272 4.18787 4.21531 4.29364 4.36047 4.41094 4.47212 4.71102 4.80002 4.99674 5.06216 5.10502 5.23585 5.30120 5.71487 5.79563 6.01089 6.13021 6.24792 6.94038 6.94882 6.96611 8.61542 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020414 B = 0.002490 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.272366 B =11242.055688 C =12397.253036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.365 6.365 3 C 0.649 3.351 4 O -0.572 6.572 5 N -0.634 5.634 6 C 0.150 3.850 7 C -0.145 4.145 8 C 0.161 3.839 9 N -0.657 5.657 10 C 0.540 3.460 11 O -0.531 6.531 12 C -0.112 4.112 13 S -0.166 6.166 14 C -0.529 4.529 15 H 0.063 0.937 16 C 0.044 3.956 17 N -0.917 5.917 18 Si 0.914 3.086 19 H -0.262 1.262 20 H -0.261 1.261 21 H -0.234 1.234 22 C -0.123 4.123 23 C -0.099 4.099 24 C 0.053 3.947 25 F -0.133 7.133 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.139 0.861 29 H 0.433 0.567 30 H 0.166 0.834 31 H 0.429 0.571 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.277 0.723 35 H 0.135 0.865 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.441 -27.916 -13.302 30.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.278 6.278 3 C 0.404 3.596 4 O -0.462 6.462 5 N -0.285 5.285 6 C 0.053 3.947 7 C -0.168 4.168 8 C 0.065 3.935 9 N -0.304 5.304 10 C 0.328 3.672 11 O -0.406 6.406 12 C -0.263 4.263 13 S 0.060 5.940 14 C -0.677 4.677 15 H 0.082 0.918 16 C -0.161 4.161 17 N -0.555 5.555 18 Si 0.736 3.264 19 H -0.186 1.186 20 H -0.186 1.186 21 H -0.158 1.158 22 C -0.144 4.144 23 C -0.118 4.118 24 C 0.031 3.969 25 F -0.112 7.112 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.157 0.843 29 H 0.273 0.727 30 H 0.183 0.817 31 H 0.268 0.732 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.086 0.914 35 H 0.153 0.847 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.026 -27.639 -12.722 30.427 hybrid contribution -1.290 0.437 -0.081 1.365 sum -1.316 -27.202 -12.804 30.094 Atomic orbital electron populations 1.23636 0.71812 1.06106 1.03095 1.86284 1.26408 1.28944 1.86132 1.18155 0.82840 0.82881 0.75702 1.90925 1.65030 1.35237 1.54979 1.41678 1.03870 1.09148 1.73820 1.17139 0.90754 0.85699 1.01070 1.21172 1.03258 0.89430 1.02907 1.17665 0.92659 0.87024 0.96118 1.43333 1.14061 1.21998 1.51028 1.20135 0.86757 0.83571 0.76780 1.90718 1.17645 1.76797 1.55454 1.23260 1.02593 0.95922 1.04539 1.84677 1.19787 1.22065 1.67467 1.22466 0.99454 1.06684 1.39087 0.91831 1.25579 1.02049 0.93852 0.94629 1.70020 1.37846 1.09750 1.37916 0.85863 0.79905 0.81323 0.79273 1.18638 1.18575 1.15828 1.21101 0.93815 1.00395 0.99105 1.21030 1.01856 0.89591 0.99365 1.17149 0.89407 0.85613 1.04764 1.91488 1.79665 1.54730 1.85323 0.91609 0.91488 0.84309 0.72709 0.81673 0.73170 0.86086 0.86280 0.91390 0.84694 0.81465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.40 10.56 113.37 1.20 1.60 16 2 O -0.36 -5.19 10.62 -55.66 -0.59 -5.79 16 3 C 0.65 12.11 8.59 129.79 1.12 13.23 16 4 O -0.57 -13.44 13.04 19.80 0.26 -13.18 16 5 N -0.63 -10.49 5.35 -429.31 -2.30 -12.79 16 6 C 0.15 3.04 6.51 38.13 0.25 3.29 16 7 C -0.15 -3.30 8.70 22.51 0.20 -3.10 16 8 C 0.16 3.98 6.26 38.11 0.24 4.22 16 9 N -0.66 -16.10 5.34 -303.49 -1.62 -17.72 16 10 C 0.54 17.49 7.58 87.66 0.66 18.15 16 11 O -0.53 -20.76 13.59 -3.07 -0.04 -20.80 16 12 C -0.11 -3.97 6.16 71.23 0.44 -3.53 16 13 S -0.17 -8.05 18.55 -56.49 -1.05 -9.10 16 14 C -0.53 -30.07 10.04 67.95 0.68 -29.39 16 15 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 16 C 0.04 2.56 5.50 84.86 0.47 3.03 16 17 N -0.92 -55.30 13.97 21.65 0.30 -55.00 16 18 Si 0.91 44.14 27.74 68.60 1.90 46.04 16 19 H -0.26 -12.31 7.11 99.48 0.71 -11.61 16 20 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.23 -11.21 6.74 99.48 0.67 -10.54 16 22 C -0.12 -3.04 8.65 22.41 0.19 -2.85 16 23 C -0.10 -1.97 10.01 22.28 0.22 -1.74 16 24 C 0.05 1.03 7.31 22.49 0.16 1.20 16 25 F -0.13 -2.36 16.74 44.97 0.75 -1.60 16 26 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.43 4.97 8.46 -92.71 -0.78 4.19 16 30 H 0.17 3.88 5.42 -2.91 -0.02 3.86 16 31 H 0.43 7.87 8.82 -92.71 -0.82 7.05 16 32 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 33 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 34 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 35 H 0.14 3.78 6.46 -2.91 -0.02 3.77 16 36 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -73.30 336.03 2.98 -70.32 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -0.47 Total: 15.54 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 5.83 Total: 4.09 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -3.62 Total: -85.51 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -0.37 Total: -39.77 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.75 Total: -1.60 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.90 Total: 46.04 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.05 Total: -9.10 kcal Total: -73.30 2.98 -70.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066488600.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.968 kcal (2) G-P(sol) polarization free energy of solvation -73.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds