Wall clock time and date at job start Tue Mar 31 2020 14:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86794 * 120.00184 * 2 1 4 4 H 1.48503 * 109.47540 * 270.00589 * 3 2 1 5 5 H 1.48502 * 109.47382 * 30.00147 * 3 2 1 6 6 H 1.48502 * 109.47113 * 150.00303 * 3 2 1 7 7 C 1.38651 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00211 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00088 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99935 * 185.05715 * 9 7 2 11 11 C 1.38882 * 120.06744 * 174.18760 * 10 9 7 12 12 C 1.38104 * 119.92852 * 179.74739 * 11 10 9 13 13 C 1.38296 * 120.06823 * 0.52646 * 12 11 10 14 14 C 1.50706 * 119.92847 * 179.76409 * 13 12 11 15 15 C 1.50699 * 109.47338 * 269.97998 * 14 13 12 16 16 N 1.30926 * 126.39627 * 89.71444 * 15 14 13 17 17 C 1.35396 * 105.57128 * 179.86122 * 16 15 14 18 18 C 1.47738 * 126.44681 * 180.15066 * 17 16 15 19 19 C 1.34851 * 125.27091 * 180.02562 * 18 17 16 20 20 C 1.37818 * 114.72392 * 179.79060 * 19 18 17 21 21 C 1.33716 * 115.07324 * 0.50069 * 20 19 18 22 22 S 1.75869 * 109.74343 * 359.72793 * 21 20 19 23 23 N 1.31036 * 107.10297 * 0.40751 * 17 16 15 24 24 O 1.21284 * 110.04098 * 359.74386 * 23 17 16 25 25 C 1.38303 * 120.14118 * 359.75085 * 13 12 11 26 26 C 1.38099 * 120.06407 * 359.97094 * 25 13 12 27 27 H 0.97003 * 119.99701 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.03719 * 0.02562 * 11 10 9 29 29 H 1.08007 * 119.96381 * 180.27376 * 12 11 10 30 30 H 1.08999 * 109.47088 * 29.98763 * 14 13 12 31 31 H 1.09003 * 109.46829 * 149.98373 * 14 13 12 32 32 H 1.08003 * 122.64162 * 359.97438 * 19 18 17 33 33 H 1.08004 * 122.46925 * 180.22800 * 20 19 18 34 34 H 1.08003 * 125.13164 * 179.73228 * 21 20 19 35 35 H 1.07996 * 119.96539 * 179.97438 * 25 13 12 36 36 H 1.08006 * 120.03104 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4472 2.6527 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2009 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1055 11 6 1.4365 -4.7340 0.2336 12 6 2.1873 -5.8885 0.3360 13 6 3.5685 -5.8204 0.3222 14 6 4.3848 -7.0819 0.4396 15 6 4.6647 -7.3657 1.8929 16 7 3.9205 -8.0754 2.7032 17 6 4.5630 -8.0590 3.8949 18 6 4.1226 -8.7237 5.1386 19 6 4.7821 -8.6913 6.3144 20 6 4.1717 -9.3849 7.3370 21 6 3.0269 -9.9914 7.0060 22 16 2.6607 -9.6861 5.3131 23 7 5.6460 -7.3381 3.7389 24 8 5.7162 -6.9351 2.5971 25 6 4.2023 -4.5972 0.2006 26 6 3.4571 -3.4396 0.0920 27 1 -0.4850 0.8401 0.0004 28 1 0.3579 -4.7874 0.2485 29 1 1.6953 -6.8453 0.4312 30 1 3.8307 -7.9148 0.0068 31 1 5.3269 -6.9559 -0.0940 32 1 5.7139 -8.1610 6.4453 33 1 4.5895 -9.4384 8.3316 34 1 2.4188 -10.5800 7.6770 35 1 5.2811 -4.5473 0.1906 36 1 3.9526 -2.4847 -0.0033 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074118487.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:55 Heat of formation + Delta-G solvation = 100.964730 kcal Electronic energy + Delta-G solvation = -23289.349187 eV Core-core repulsion = 19641.553735 eV Total energy + Delta-G solvation = -3647.795452 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.50228 -39.17725 -38.15977 -37.00272 -35.78500 -33.76740 -32.35947 -30.83063 -30.26022 -29.55925 -26.74053 -25.36661 -25.18904 -23.64947 -22.29927 -22.04508 -20.71245 -19.17567 -18.52413 -18.13785 -18.03661 -17.03587 -16.70263 -15.90134 -15.10299 -14.73097 -14.68866 -14.47927 -14.00978 -13.75106 -13.62774 -13.53894 -13.09870 -12.92563 -12.82265 -12.73252 -12.40829 -11.94525 -11.86207 -11.61837 -11.36503 -11.22341 -11.18683 -10.97885 -10.86427 -10.71246 -10.49026 -10.16785 -9.42510 -8.91512 -8.81850 -8.77978 -8.28786 -7.33117 -6.53041 -4.11778 0.25339 1.18544 1.24872 1.67756 2.00373 2.13279 2.15488 2.74447 2.89807 3.08838 3.10201 3.14868 3.39786 3.90625 4.05389 4.45910 4.71960 4.86608 5.00714 5.09169 5.14202 5.17632 5.22190 5.26072 5.45565 5.60367 5.62684 5.75581 5.76497 5.85220 5.99857 6.07095 6.12030 6.31406 6.58865 6.79141 6.94921 7.12920 7.23010 7.34546 7.70270 7.91637 8.10632 8.92239 9.60186 10.64457 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.002484 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.251731 B =11268.689842 C =11653.488619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.172 6.172 10 C 0.161 3.839 11 C -0.194 4.194 12 C -0.051 4.051 13 C -0.206 4.206 14 C 0.031 3.969 15 C 0.212 3.788 16 N -0.480 5.480 17 C 0.234 3.766 18 C -0.126 4.126 19 C -0.096 4.096 20 C -0.139 4.139 21 C -0.214 4.214 22 S 0.188 5.812 23 N -0.374 5.374 24 O 0.082 5.918 25 C -0.054 4.054 26 C -0.236 4.236 27 H 0.271 0.729 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.171 0.829 35 H 0.112 0.888 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.723 -18.285 8.175 21.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.106 3.894 11 C -0.214 4.214 12 C -0.069 4.069 13 C -0.208 4.208 14 C -0.008 4.008 15 C -0.009 4.009 16 N -0.213 5.213 17 C -0.037 4.037 18 C -0.245 4.245 19 C -0.131 4.131 20 C -0.169 4.169 21 C -0.351 4.351 22 S 0.453 5.547 23 N -0.082 5.082 24 O 0.021 5.979 25 C -0.072 4.072 26 C -0.255 4.255 27 H 0.081 0.919 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.188 0.812 35 H 0.130 0.870 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.304 -18.573 7.917 21.470 hybrid contribution 1.610 1.419 0.939 2.343 sum 8.914 -17.154 8.857 21.264 Atomic orbital electron populations 1.70041 1.06020 1.27889 1.45370 1.25325 0.95868 0.98954 0.96324 0.85693 0.78968 0.79890 0.78805 1.19751 1.20176 1.19101 1.21367 0.91890 0.80717 1.52970 0.88882 1.83979 1.34514 1.11561 1.77414 1.19452 0.90354 0.88069 0.91529 1.20213 0.99738 0.90213 1.11206 1.20528 0.92610 0.97104 0.96696 1.18788 0.93414 0.92510 1.16134 1.19030 1.01873 0.98512 0.81354 1.29099 0.82705 0.89937 0.99113 1.72058 1.27783 1.21678 0.99779 1.22677 0.89943 0.98258 0.92812 1.21307 1.02101 1.07971 0.93094 1.20348 1.01476 1.00540 0.90750 1.20020 0.96078 1.00112 1.00686 1.26056 1.02169 1.07202 0.99703 1.84502 1.20044 1.45269 1.04896 1.74977 1.20507 1.15084 0.97648 1.85271 1.41568 1.55781 1.15234 1.20647 0.98540 0.91550 0.96460 1.21141 0.93762 0.98934 1.11680 0.91861 0.86289 0.86626 0.86992 0.87796 0.83579 0.83603 0.81173 0.87034 0.85302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.84 13.67 55.48 0.76 -24.08 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.17 29.55 -169.99 -5.02 15.15 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.39 -10.78 9.49 30.88 0.29 -10.48 16 8 H 0.09 2.35 5.20 -52.48 -0.27 2.07 16 9 O -0.17 -4.82 9.76 0.04 0.00 -4.82 16 10 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 11 C -0.19 -3.99 9.99 -39.39 -0.39 -4.38 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 13 C -0.21 -3.22 5.12 -104.57 -0.54 -3.75 16 14 C 0.03 0.36 5.97 -29.03 -0.17 0.19 16 15 C 0.21 2.96 7.73 -12.98 -0.10 2.86 16 16 N -0.48 -7.37 11.58 -9.89 -0.11 -7.48 16 17 C 0.23 3.58 8.02 -156.04 -1.25 2.33 16 18 C -0.13 -1.65 6.44 -36.90 -0.24 -1.89 16 19 C -0.10 -1.07 10.05 -40.94 -0.41 -1.48 16 20 C -0.14 -1.20 10.16 -41.32 -0.42 -1.62 16 21 C -0.21 -1.76 11.23 29.15 0.33 -1.43 16 22 S 0.19 2.02 23.32 -107.50 -2.51 -0.49 16 23 N -0.37 -5.85 12.16 30.98 0.38 -5.47 16 24 O 0.08 1.21 11.29 18.02 0.20 1.41 16 25 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 26 C -0.24 -4.91 9.17 -39.40 -0.36 -5.27 16 27 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 29 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 30 H 0.11 1.08 8.08 -51.93 -0.42 0.66 16 31 H 0.10 0.91 8.08 -51.93 -0.42 0.49 16 32 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 33 H 0.15 0.88 8.06 -52.48 -0.42 0.45 16 34 H 0.17 0.90 8.06 -52.48 -0.42 0.47 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.13 2.69 5.64 -52.48 -0.30 2.39 16 LS Contribution 341.21 15.07 5.14 5.14 Total: -1.00 -31.92 341.21 -8.63 -40.55 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -3.08 Total: 3.06 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -4.39 Total: -22.97 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 1.02 Total: -37.03 kcal Atomic # 8 Polarization: -3.61 SS G_CDS: 0.20 Total: -3.40 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.51 Total: -0.49 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.92 -8.63 -40.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074118487.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.512 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds