Wall clock time and date at job start Tue Mar 31 2020 14:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86794 * 120.00184 * 2 1 4 4 H 1.48503 * 109.47540 * 270.00589 * 3 2 1 5 5 H 1.48502 * 109.47382 * 30.00147 * 3 2 1 6 6 H 1.48502 * 109.47113 * 150.00303 * 3 2 1 7 7 C 1.38651 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00211 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00088 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99935 * 185.05715 * 9 7 2 11 11 C 1.38882 * 120.06744 * 174.18760 * 10 9 7 12 12 C 1.38104 * 119.92852 * 179.74739 * 11 10 9 13 13 C 1.38296 * 120.06823 * 0.52646 * 12 11 10 14 14 C 1.50706 * 119.92847 * 179.76409 * 13 12 11 15 15 C 1.50699 * 109.47338 * 269.97998 * 14 13 12 16 16 N 1.30926 * 126.39627 * 89.71444 * 15 14 13 17 17 C 1.35396 * 105.57128 * 179.86122 * 16 15 14 18 18 C 1.47738 * 126.44681 * 180.15066 * 17 16 15 19 19 C 1.34851 * 125.27091 * 180.02562 * 18 17 16 20 20 C 1.37818 * 114.72392 * 179.79060 * 19 18 17 21 21 C 1.33716 * 115.07324 * 0.50069 * 20 19 18 22 22 S 1.75869 * 109.74343 * 359.72793 * 21 20 19 23 23 N 1.31036 * 107.10297 * 0.40751 * 17 16 15 24 24 O 1.21284 * 110.04098 * 359.74386 * 23 17 16 25 25 C 1.38303 * 120.14118 * 359.75085 * 13 12 11 26 26 C 1.38099 * 120.06407 * 359.97094 * 25 13 12 27 27 H 0.97003 * 119.99701 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.03719 * 0.02562 * 11 10 9 29 29 H 1.08007 * 119.96381 * 180.27376 * 12 11 10 30 30 H 1.08999 * 109.47088 * 29.98763 * 14 13 12 31 31 H 1.09003 * 109.46829 * 149.98373 * 14 13 12 32 32 H 1.08003 * 122.64162 * 359.97438 * 19 18 17 33 33 H 1.08004 * 122.46925 * 180.22800 * 20 19 18 34 34 H 1.08003 * 125.13164 * 179.73228 * 21 20 19 35 35 H 1.07996 * 119.96539 * 179.97438 * 25 13 12 36 36 H 1.08006 * 120.03104 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4472 2.6527 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2009 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1055 11 6 1.4365 -4.7340 0.2336 12 6 2.1873 -5.8885 0.3360 13 6 3.5685 -5.8204 0.3222 14 6 4.3848 -7.0819 0.4396 15 6 4.6647 -7.3657 1.8929 16 7 3.9205 -8.0754 2.7032 17 6 4.5630 -8.0590 3.8949 18 6 4.1226 -8.7237 5.1386 19 6 4.7821 -8.6913 6.3144 20 6 4.1717 -9.3849 7.3370 21 6 3.0269 -9.9914 7.0060 22 16 2.6607 -9.6861 5.3131 23 7 5.6460 -7.3381 3.7389 24 8 5.7162 -6.9351 2.5971 25 6 4.2023 -4.5972 0.2006 26 6 3.4571 -3.4396 0.0920 27 1 -0.4850 0.8401 0.0004 28 1 0.3579 -4.7874 0.2485 29 1 1.6953 -6.8453 0.4312 30 1 3.8307 -7.9148 0.0068 31 1 5.3269 -6.9559 -0.0940 32 1 5.7139 -8.1610 6.4453 33 1 4.5895 -9.4384 8.3316 34 1 2.4188 -10.5800 7.6770 35 1 5.2811 -4.5473 0.1906 36 1 3.9526 -2.4847 -0.0033 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074118487.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:54 Heat of formation + Delta-G solvation = 80.874784 kcal Electronic energy + Delta-G solvation = -23290.220353 eV Core-core repulsion = 19641.553735 eV Total energy + Delta-G solvation = -3648.666617 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.61034 -40.83227 -38.94288 -38.61716 -36.88754 -35.01393 -34.20738 -32.10287 -31.78714 -30.49375 -28.21955 -27.04031 -26.19090 -24.72344 -23.64619 -23.31978 -22.14090 -20.00906 -19.87717 -19.45784 -19.25943 -18.79343 -17.72340 -16.76059 -16.48251 -16.44851 -16.06068 -15.83122 -15.50113 -15.11253 -14.85719 -14.51007 -14.46818 -14.25699 -13.95169 -13.70617 -13.61043 -13.27692 -13.00199 -12.96510 -12.83007 -12.56381 -12.46299 -12.31097 -12.23729 -12.14120 -11.79624 -11.28733 -11.19605 -10.81876 -9.81031 -9.67109 -9.56804 -9.00891 -8.49568 -6.17904 -0.61535 0.17588 0.38164 0.58191 0.59855 0.93528 1.18130 1.34484 1.43173 1.51892 1.82999 1.84679 2.16198 2.40549 2.80301 3.02675 3.16897 3.48612 3.87474 3.92851 4.03020 4.11031 4.17886 4.34061 4.41598 4.45382 4.56478 4.57620 4.75288 4.76927 4.87602 4.99517 5.06017 5.13127 5.19950 5.27050 5.35115 5.52897 5.68904 5.70659 6.00542 6.17072 6.95187 7.02582 7.74910 8.73537 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.002484 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.251731 B =11268.689842 C =11653.488619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.414 4.414 8 H 0.104 0.896 9 O -0.230 6.230 10 C 0.120 3.880 11 C -0.209 4.209 12 C -0.046 4.046 13 C -0.175 4.175 14 C 0.035 3.965 15 C 0.212 3.788 16 N -0.497 5.497 17 C 0.227 3.773 18 C -0.171 4.171 19 C -0.089 4.089 20 C -0.147 4.147 21 C -0.188 4.188 22 S 0.168 5.832 23 N -0.394 5.394 24 O 0.079 5.921 25 C -0.050 4.050 26 C -0.246 4.246 27 H 0.273 0.727 28 H 0.112 0.888 29 H 0.148 0.852 30 H 0.141 0.859 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.178 0.822 34 H 0.206 0.794 35 H 0.152 0.848 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.175 -20.784 9.272 25.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.137 6.137 10 C 0.069 3.931 11 C -0.229 4.229 12 C -0.064 4.064 13 C -0.177 4.177 14 C -0.003 4.003 15 C -0.008 4.008 16 N -0.230 5.230 17 C -0.043 4.043 18 C -0.290 4.290 19 C -0.125 4.125 20 C -0.176 4.176 21 C -0.325 4.325 22 S 0.433 5.567 23 N -0.103 5.103 24 O 0.020 5.980 25 C -0.068 4.068 26 C -0.266 4.266 27 H 0.082 0.918 28 H 0.130 0.870 29 H 0.166 0.834 30 H 0.159 0.841 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.195 0.805 34 H 0.223 0.777 35 H 0.170 0.830 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.797 -21.132 9.003 24.972 hybrid contribution 0.975 1.731 0.726 2.116 sum 10.772 -19.401 9.730 24.230 Atomic orbital electron populations 1.70188 1.08071 1.28869 1.48692 1.26607 0.96843 1.02808 0.95783 0.84591 0.77785 0.74507 0.79378 1.18543 1.19723 1.17672 1.21850 0.92598 0.81357 1.53200 0.87880 1.83947 1.36111 1.12684 1.80930 1.20023 0.91823 0.87913 0.93369 1.20456 1.00027 0.90647 1.11749 1.20936 0.93441 0.97023 0.95012 1.19269 0.93238 0.94001 1.11181 1.19289 1.03623 0.96959 0.80452 1.29424 0.82349 0.89506 0.99530 1.72060 1.28319 1.22438 1.00186 1.23103 0.89698 0.97929 0.93566 1.21525 1.03950 1.10308 0.93227 1.20630 1.01237 0.99780 0.90807 1.20318 0.96154 0.99667 1.01430 1.26499 1.01830 1.05915 0.98285 1.84505 1.19563 1.45272 1.07394 1.74954 1.21197 1.16046 0.98130 1.85236 1.41855 1.55821 1.15113 1.21096 1.00451 0.90525 0.94699 1.21279 0.92926 1.00327 1.12020 0.91793 0.87022 0.83441 0.84108 0.83653 0.83554 0.80505 0.77706 0.82989 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.56 13.67 21.61 0.30 -56.26 16 2 C -0.02 -1.29 5.49 84.83 0.47 -0.83 16 3 Si 1.02 42.69 29.55 68.60 2.03 44.72 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 6 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16 7 C -0.41 -23.98 9.49 67.92 0.64 -23.34 16 8 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 9 O -0.23 -13.82 9.76 -22.78 -0.22 -14.04 16 10 C 0.12 5.86 6.65 22.58 0.15 6.01 16 11 C -0.21 -8.78 9.99 22.39 0.22 -8.56 16 12 C -0.05 -1.47 9.69 22.25 0.22 -1.26 16 13 C -0.18 -4.84 5.12 -19.83 -0.10 -4.94 16 14 C 0.03 0.63 5.97 29.10 0.17 0.81 16 15 C 0.21 5.26 7.73 88.35 0.68 5.94 16 16 N -0.50 -14.26 11.58 -302.32 -3.50 -17.76 16 17 C 0.23 6.71 8.02 136.96 1.10 7.81 16 18 C -0.17 -4.32 6.44 24.01 0.15 -4.16 16 19 C -0.09 -1.82 10.05 21.39 0.22 -1.61 16 20 C -0.15 -2.09 10.16 21.14 0.21 -1.87 16 21 C -0.19 -2.48 11.23 66.79 0.75 -1.73 16 22 S 0.17 3.35 23.32 -56.49 -1.32 2.03 16 23 N -0.39 -11.83 12.16 -58.82 -0.72 -12.54 16 24 O 0.08 2.14 11.29 74.54 0.84 2.99 16 25 C -0.05 -1.55 9.69 22.25 0.22 -1.34 16 26 C -0.25 -10.29 9.17 22.39 0.21 -10.09 16 27 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 29 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 30 H 0.14 1.90 8.08 -2.39 -0.02 1.88 16 31 H 0.15 1.59 8.08 -2.39 -0.02 1.57 16 32 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.18 1.40 8.06 -2.91 -0.02 1.37 16 34 H 0.21 1.21 8.06 -2.91 -0.02 1.18 16 35 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 36 H 0.12 5.16 5.64 -2.91 -0.02 5.14 16 Total: -1.00 -76.99 341.21 3.86 -73.14 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 1.14 Total: 16.88 kcal Atomic # 6 Polarization: -44.45 SS G_CDS: 5.31 Total: -39.15 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -3.92 Total: -86.56 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.62 Total: -11.06 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.32 Total: 2.03 kcal Total: -76.99 3.86 -73.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074118487.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.012 kcal (2) G-P(sol) polarization free energy of solvation -76.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds