Wall clock time and date at job start Tue Mar 31 2020 15:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00049 * 2 1 4 4 H 1.48507 * 109.47096 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47466 * 299.99924 * 3 2 1 6 6 H 1.48501 * 109.47151 * 60.00433 * 3 2 1 7 7 C 1.38813 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99800 * 163.05957 * 7 2 1 9 9 N 1.36929 * 120.00185 * 343.06472 * 7 2 1 10 10 C 1.46930 * 120.62831 * 331.83717 * 9 7 2 11 11 C 1.53193 * 108.77851 * 233.63085 * 10 9 7 12 12 C 1.53037 * 109.31246 * 305.36789 * 11 10 9 13 13 C 1.52997 * 109.46260 * 181.38453 * 12 11 10 14 14 N 1.46493 * 109.47570 * 174.96905 * 13 12 11 15 15 C 1.34782 * 120.00292 * 179.97438 * 14 13 12 16 16 O 1.21719 * 119.99716 * 0.02562 * 15 14 13 17 17 C 1.46467 * 119.99891 * 180.02562 * 15 14 13 18 18 C 1.36692 * 125.44375 * 179.97438 * 17 15 14 19 19 C 1.37400 * 113.31437 * 179.97438 * 18 17 15 20 20 C 1.34015 * 115.07430 * 0.02562 * 19 18 17 21 21 Cl 1.73601 * 124.53413 * 180.02562 * 20 19 18 22 22 S 1.70615 * 110.93426 * 0.02562 * 20 19 18 23 23 C 1.53036 * 109.52998 * 61.36783 * 12 11 10 24 24 C 1.46931 * 120.63460 * 151.86254 * 9 7 2 25 25 H 0.97000 * 120.00015 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.58601 * 113.84404 * 10 9 7 27 27 H 1.08996 * 109.70513 * 353.49052 * 10 9 7 28 28 H 1.08997 * 109.49840 * 185.41152 * 11 10 9 29 29 H 1.09001 * 109.51916 * 65.33206 * 11 10 9 30 30 H 1.09003 * 109.46293 * 301.35504 * 12 11 10 31 31 H 1.08997 * 109.47265 * 54.96787 * 13 12 11 32 32 H 1.09005 * 109.46828 * 294.97179 * 13 12 11 33 33 H 0.97003 * 119.99910 * 0.02562 * 14 13 12 34 34 H 1.08002 * 123.34418 * 0.25734 * 18 17 15 35 35 H 1.08005 * 122.46343 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.49638 * 58.58156 * 23 12 11 37 37 H 1.08998 * 109.50232 * 178.67754 * 23 12 11 38 38 H 1.09004 * 109.58226 * 246.15409 * 24 9 7 39 39 H 1.08996 * 109.58310 * 6.43900 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2731 9 7 1.3702 -2.3625 0.3444 10 6 0.2264 -2.3408 1.2664 11 6 0.4984 -3.3200 2.4127 12 6 0.8134 -4.7014 1.8343 13 6 1.0518 -5.6903 2.9771 14 7 1.2346 -7.0362 2.4283 15 6 1.4606 -8.0763 3.2552 16 8 1.5124 -7.8973 4.4580 17 6 1.6438 -9.4218 2.7063 18 6 1.8786 -10.5516 3.4390 19 6 2.0110 -11.6816 2.6687 20 6 1.8895 -11.4864 1.3484 21 17 2.0123 -12.7391 0.1529 22 16 1.5979 -9.8419 0.9996 23 6 2.0686 -4.6171 0.9629 24 6 1.8143 -3.6529 -0.2001 25 1 -0.4850 0.8400 0.0004 26 1 -0.6768 -2.6417 0.7354 27 1 0.0966 -1.3357 1.6675 28 1 -0.3819 -3.3853 3.0520 29 1 1.3480 -2.9684 2.9982 30 1 -0.0266 -5.0419 1.2289 31 1 0.1924 -5.6849 3.6475 32 1 1.9452 -5.3987 3.5294 33 1 1.1936 -7.1787 1.4696 34 1 1.9484 -10.5564 4.5167 35 1 2.1999 -12.6555 3.0957 36 1 2.9035 -4.2529 1.5617 37 1 2.3061 -5.6057 0.5701 38 1 1.0406 -4.0607 -0.8506 39 1 2.7335 -3.5125 -0.7689 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081733866.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:44 Heat of formation + Delta-G solvation = 2.150576 kcal Electronic energy + Delta-G solvation = -22620.396897 eV Core-core repulsion = 19101.716787 eV Total energy + Delta-G solvation = -3518.680110 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.00721 -38.37290 -37.75337 -36.91957 -35.04770 -32.96963 -31.00861 -30.11104 -29.62637 -27.05141 -25.25072 -23.94202 -22.38635 -21.68588 -21.01882 -19.89720 -19.32161 -18.77133 -16.79539 -16.65061 -16.18705 -15.52526 -15.45469 -14.84227 -14.33868 -14.15616 -13.92553 -13.72262 -13.59375 -13.49861 -13.18855 -13.06698 -12.42257 -12.37213 -12.04441 -11.83421 -11.79818 -11.37396 -11.27828 -11.01498 -10.75112 -10.54331 -10.35780 -10.25539 -10.20065 -9.92909 -9.59689 -9.48061 -9.29454 -9.12552 -9.01985 -8.48842 -6.68823 -5.80608 -3.23054 -0.06927 0.55113 1.23976 1.67182 1.86712 2.95172 2.97678 3.36178 3.44392 3.46378 4.48362 4.52083 4.67133 4.87442 5.03720 5.16868 5.32619 5.34801 5.38840 5.54684 5.57921 5.74166 5.80420 5.87036 5.99174 6.07470 6.27960 6.29094 6.40772 6.56781 6.64710 6.72340 6.77901 6.94579 7.27418 7.35702 7.63965 7.78592 7.95743 8.43718 9.20017 9.83419 10.39959 11.27961 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.025259 B = 0.002302 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.236010 B =12161.601927 C =12873.817796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.171 3.829 11 C -0.132 4.132 12 C -0.091 4.091 13 C 0.123 3.877 14 N -0.718 5.718 15 C 0.587 3.413 16 O -0.527 6.527 17 C -0.255 4.255 18 C -0.052 4.052 19 C -0.134 4.134 20 C -0.170 4.170 21 Cl -0.008 7.008 22 S 0.256 5.744 23 C -0.128 4.128 24 C 0.145 3.855 25 H 0.253 0.747 26 H 0.018 0.982 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.398 0.602 34 H 0.162 0.838 35 H 0.155 0.845 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.016 0.984 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.126 -24.165 3.069 24.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.046 3.954 11 C -0.172 4.172 12 C -0.110 4.110 13 C 0.001 3.999 14 N -0.369 5.369 15 C 0.372 3.628 16 O -0.406 6.406 17 C -0.376 4.376 18 C -0.085 4.085 19 C -0.167 4.167 20 C -0.316 4.316 21 Cl 0.021 6.979 22 S 0.522 5.478 23 C -0.168 4.168 24 C 0.019 3.981 25 H 0.063 0.937 26 H 0.036 0.964 27 H 0.106 0.894 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.232 0.768 34 H 0.180 0.820 35 H 0.173 0.827 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.846 -23.144 2.443 23.346 hybrid contribution 0.618 -0.363 0.666 0.978 sum 2.463 -23.507 3.109 23.839 Atomic orbital electron populations 1.70035 1.05262 1.25402 1.54049 1.25043 0.95287 0.98424 1.00927 0.86243 0.79389 0.83986 0.77281 1.20267 1.21746 1.21539 1.19219 0.92556 0.84811 1.41521 0.91704 1.44054 1.35907 1.01523 1.50031 1.20764 0.88623 0.98171 0.87887 1.22178 1.00440 0.94471 1.00131 1.21336 0.98876 0.95452 0.95366 1.21681 1.01950 0.79400 0.96909 1.46008 1.72546 1.08401 1.09955 1.16844 0.77122 0.82509 0.86334 1.90852 1.51123 1.84486 1.14119 1.24859 1.16699 0.98839 0.97225 1.20645 0.96693 0.89217 1.01923 1.20084 1.04449 1.01330 0.90835 1.25031 1.14050 0.97313 0.95229 1.98394 1.96551 1.49189 1.53781 1.83317 1.64919 0.95752 1.03764 1.22093 0.97028 0.98712 0.98939 1.20886 0.97585 0.87011 0.92634 0.93680 0.96416 0.89360 0.92976 0.92303 0.91197 0.91304 0.91127 0.76766 0.82008 0.82749 0.92012 0.93602 0.96569 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.85 11.19 55.49 0.62 -25.23 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.47 29.59 -169.99 -5.03 16.44 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.25 -6.78 9.58 -15.06 -0.14 -6.92 16 8 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -14.37 2.99 -172.31 -0.52 -14.89 16 10 C 0.17 3.93 5.30 -3.71 -0.02 3.91 16 11 C -0.13 -2.37 5.36 -26.61 -0.14 -2.51 16 12 C -0.09 -1.38 2.19 -90.58 -0.20 -1.58 16 13 C 0.12 1.67 5.06 -4.05 -0.02 1.65 16 14 N -0.72 -8.66 5.27 -61.69 -0.32 -8.98 16 15 C 0.59 7.65 7.78 -12.94 -0.10 7.55 16 16 O -0.53 -8.62 16.84 5.17 0.09 -8.53 16 17 C -0.25 -2.65 6.45 -36.83 -0.24 -2.88 16 18 C -0.05 -0.47 10.01 -40.45 -0.40 -0.88 16 19 C -0.13 -1.03 10.08 -41.37 -0.42 -1.45 16 20 C -0.17 -1.39 6.82 29.25 0.20 -1.19 16 21 Cl -0.01 -0.06 29.27 -51.86 -1.52 -1.58 16 22 S 0.26 2.11 22.15 -107.50 -2.38 -0.27 16 23 C -0.13 -2.04 5.25 -26.61 -0.14 -2.18 16 24 C 0.15 2.88 6.52 -3.71 -0.02 2.86 16 25 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.09 2.30 6.06 -51.93 -0.31 1.98 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.40 4.07 6.76 -40.82 -0.28 3.79 16 34 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.60 7.15 -51.93 -0.37 0.23 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.05 1.06 7.93 -51.93 -0.41 0.64 16 LS Contribution 349.27 15.07 5.26 5.26 Total: -1.00 -30.56 349.27 -10.68 -41.24 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.15 Total: 0.19 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.74 Total: -3.66 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.22 Total: -49.10 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.53 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.38 Total: -0.27 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.52 Total: -1.58 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.56 -10.68 -41.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081733866.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.393 kcal (2) G-P(sol) polarization free energy of solvation -30.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds