Wall clock time and date at job start Tue Mar 31 2020 15:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00049 * 2 1 4 4 H 1.48507 * 109.47096 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47466 * 299.99924 * 3 2 1 6 6 H 1.48501 * 109.47151 * 60.00433 * 3 2 1 7 7 C 1.38813 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99800 * 163.05957 * 7 2 1 9 9 N 1.36929 * 120.00185 * 343.06472 * 7 2 1 10 10 C 1.46930 * 120.62831 * 331.83717 * 9 7 2 11 11 C 1.53193 * 108.77851 * 233.63085 * 10 9 7 12 12 C 1.53037 * 109.31246 * 305.36789 * 11 10 9 13 13 C 1.52997 * 109.46260 * 181.38453 * 12 11 10 14 14 N 1.46493 * 109.47570 * 174.96905 * 13 12 11 15 15 C 1.34782 * 120.00292 * 179.97438 * 14 13 12 16 16 O 1.21719 * 119.99716 * 0.02562 * 15 14 13 17 17 C 1.46467 * 119.99891 * 180.02562 * 15 14 13 18 18 C 1.36692 * 125.44375 * 179.97438 * 17 15 14 19 19 C 1.37400 * 113.31437 * 179.97438 * 18 17 15 20 20 C 1.34015 * 115.07430 * 0.02562 * 19 18 17 21 21 Cl 1.73601 * 124.53413 * 180.02562 * 20 19 18 22 22 S 1.70615 * 110.93426 * 0.02562 * 20 19 18 23 23 C 1.53036 * 109.52998 * 61.36783 * 12 11 10 24 24 C 1.46931 * 120.63460 * 151.86254 * 9 7 2 25 25 H 0.97000 * 120.00015 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.58601 * 113.84404 * 10 9 7 27 27 H 1.08996 * 109.70513 * 353.49052 * 10 9 7 28 28 H 1.08997 * 109.49840 * 185.41152 * 11 10 9 29 29 H 1.09001 * 109.51916 * 65.33206 * 11 10 9 30 30 H 1.09003 * 109.46293 * 301.35504 * 12 11 10 31 31 H 1.08997 * 109.47265 * 54.96787 * 13 12 11 32 32 H 1.09005 * 109.46828 * 294.97179 * 13 12 11 33 33 H 0.97003 * 119.99910 * 0.02562 * 14 13 12 34 34 H 1.08002 * 123.34418 * 0.25734 * 18 17 15 35 35 H 1.08005 * 122.46343 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.49638 * 58.58156 * 23 12 11 37 37 H 1.08998 * 109.50232 * 178.67754 * 23 12 11 38 38 H 1.09004 * 109.58226 * 246.15409 * 24 9 7 39 39 H 1.08996 * 109.58310 * 6.43900 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2731 9 7 1.3702 -2.3625 0.3444 10 6 0.2264 -2.3408 1.2664 11 6 0.4984 -3.3200 2.4127 12 6 0.8134 -4.7014 1.8343 13 6 1.0518 -5.6903 2.9771 14 7 1.2346 -7.0362 2.4283 15 6 1.4606 -8.0763 3.2552 16 8 1.5124 -7.8973 4.4580 17 6 1.6438 -9.4218 2.7063 18 6 1.8786 -10.5516 3.4390 19 6 2.0110 -11.6816 2.6687 20 6 1.8895 -11.4864 1.3484 21 17 2.0123 -12.7391 0.1529 22 16 1.5979 -9.8419 0.9996 23 6 2.0686 -4.6171 0.9629 24 6 1.8143 -3.6529 -0.2001 25 1 -0.4850 0.8400 0.0004 26 1 -0.6768 -2.6417 0.7354 27 1 0.0966 -1.3357 1.6675 28 1 -0.3819 -3.3853 3.0520 29 1 1.3480 -2.9684 2.9982 30 1 -0.0266 -5.0419 1.2289 31 1 0.1924 -5.6849 3.6475 32 1 1.9452 -5.3987 3.5294 33 1 1.1936 -7.1787 1.4696 34 1 1.9484 -10.5564 4.5167 35 1 2.1999 -12.6555 3.0957 36 1 2.9035 -4.2529 1.5617 37 1 2.3061 -5.6057 0.5701 38 1 1.0406 -4.0607 -0.8506 39 1 2.7335 -3.5125 -0.7689 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081733866.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:43 Heat of formation + Delta-G solvation = -15.576119 kcal Electronic energy + Delta-G solvation = -22621.165585 eV Core-core repulsion = 19101.716787 eV Total energy + Delta-G solvation = -3519.448797 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.01579 -39.48028 -38.79463 -37.58361 -36.43600 -34.55437 -32.64611 -31.47615 -30.77887 -28.45185 -26.36122 -25.33919 -23.86150 -22.96314 -22.23659 -20.91115 -20.50038 -19.75044 -18.64357 -17.43943 -17.13769 -16.84592 -16.54880 -16.23547 -15.70892 -15.29884 -15.23834 -14.99365 -14.84478 -14.59881 -14.39775 -14.06293 -13.87395 -13.63144 -13.45268 -13.01026 -12.82993 -12.59172 -12.58069 -12.47068 -12.24127 -11.98745 -11.89289 -11.83549 -11.63199 -11.39926 -11.13382 -11.08278 -10.53210 -10.28682 -9.78564 -9.74168 -8.65636 -7.86464 -5.31134 -0.78180 -0.10363 0.57432 1.04089 1.17258 1.45867 1.48397 1.58223 2.01003 2.04954 2.51982 3.28171 3.65696 3.71801 3.84011 3.93597 4.03034 4.07614 4.26328 4.50760 4.54736 4.68394 4.72314 4.74314 4.79071 4.92885 4.94596 5.02258 5.11249 5.12822 5.25270 5.29183 5.31816 5.43622 5.56561 5.67468 5.80494 6.33756 6.41324 6.99724 7.17154 7.89490 8.39904 9.19786 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.025259 B = 0.002302 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.236010 B =12161.601927 C =12873.817796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.259 4.259 8 H 0.064 0.936 9 N -0.612 5.612 10 C 0.177 3.823 11 C -0.121 4.121 12 C -0.080 4.080 13 C 0.136 3.864 14 N -0.712 5.712 15 C 0.589 3.411 16 O -0.567 6.567 17 C -0.283 4.283 18 C -0.046 4.046 19 C -0.132 4.132 20 C -0.174 4.174 21 Cl 0.000 7.000 22 S 0.284 5.716 23 C -0.116 4.116 24 C 0.140 3.860 25 H 0.249 0.751 26 H -0.001 1.001 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.408 0.592 34 H 0.166 0.834 35 H 0.177 0.823 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.019 0.981 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.963 -26.357 2.919 26.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.390 4.390 8 H 0.082 0.918 9 N -0.336 5.336 10 C 0.051 3.949 11 C -0.161 4.161 12 C -0.099 4.099 13 C 0.012 3.988 14 N -0.363 5.363 15 C 0.376 3.624 16 O -0.449 6.449 17 C -0.404 4.404 18 C -0.080 4.080 19 C -0.165 4.165 20 C -0.320 4.320 21 Cl 0.028 6.972 22 S 0.551 5.449 23 C -0.155 4.155 24 C 0.014 3.986 25 H 0.058 0.942 26 H 0.017 0.983 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.245 0.755 34 H 0.183 0.817 35 H 0.194 0.806 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.037 0.963 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.699 -25.368 2.258 25.611 hybrid contribution 0.360 0.214 0.633 0.759 sum 3.059 -25.154 2.891 25.503 Atomic orbital electron populations 1.70178 1.06583 1.25698 1.55637 1.25762 0.96034 1.01390 1.01491 0.85267 0.78653 0.80143 0.76751 1.19205 1.21950 1.21753 1.19524 0.92758 0.86157 1.40545 0.91787 1.44338 1.35986 1.02424 1.50835 1.20573 0.87823 0.97533 0.88981 1.21971 1.01045 0.94820 0.98269 1.21173 0.98836 0.94151 0.95738 1.21389 1.01729 0.79721 0.95936 1.45869 1.72246 1.07674 1.10484 1.17119 0.76111 0.83383 0.85815 1.90828 1.53021 1.85254 1.15767 1.24655 1.19034 0.97835 0.98861 1.20823 0.95550 0.89277 1.02325 1.20249 1.03852 1.01855 0.90524 1.25212 1.13515 0.97586 0.95710 1.98403 1.96465 1.48810 1.53475 1.83163 1.64333 0.95619 1.01754 1.21949 0.96950 0.99311 0.97318 1.21071 0.97331 0.85952 0.94196 0.94162 0.98295 0.93064 0.91095 0.92976 0.90363 0.91172 0.91836 0.75545 0.81705 0.80580 0.92866 0.89971 0.96314 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.01 11.19 21.65 0.24 -54.77 16 2 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 3 Si 0.96 44.80 29.59 68.60 2.03 46.83 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 7 C -0.26 -14.15 9.58 84.03 0.81 -13.34 16 8 H 0.06 3.42 7.89 -2.91 -0.02 3.40 16 9 N -0.61 -29.95 2.99 -699.07 -2.09 -32.04 16 10 C 0.18 8.26 5.30 86.36 0.46 8.72 16 11 C -0.12 -4.27 5.36 30.67 0.16 -4.11 16 12 C -0.08 -2.27 2.19 -10.77 -0.02 -2.30 16 13 C 0.14 3.42 5.06 86.38 0.44 3.86 16 14 N -0.71 -15.62 5.27 -467.29 -2.46 -18.09 16 15 C 0.59 14.47 7.78 86.39 0.67 15.14 16 16 O -0.57 -18.12 16.84 -4.41 -0.07 -18.19 16 17 C -0.28 -5.35 6.45 24.05 0.16 -5.19 16 18 C -0.05 -0.75 10.01 21.71 0.22 -0.53 16 19 C -0.13 -1.70 10.08 21.11 0.21 -1.48 16 20 C -0.17 -2.39 6.82 66.86 0.46 -1.94 16 21 Cl 0.00 0.00 29.27 -2.72 -0.08 -0.08 16 22 S 0.28 4.00 22.15 -56.49 -1.25 2.74 16 23 C -0.12 -3.44 5.25 30.67 0.16 -3.28 16 24 C 0.14 5.41 6.52 86.36 0.56 5.97 16 25 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 26 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 27 H 0.05 2.76 6.06 -2.39 -0.01 2.75 16 28 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.41 7.19 6.76 -92.71 -0.63 6.56 16 34 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 35 H 0.18 1.43 8.06 -2.91 -0.02 1.40 16 36 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.08 1.86 7.15 -2.39 -0.02 1.84 16 38 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 Total: -1.00 -66.93 349.27 1.46 -65.47 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 0.45 Total: 9.05 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 4.70 Total: -0.93 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -4.31 Total: -104.90 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.07 Total: -18.19 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -1.25 Total: 2.74 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -0.08 Total: -0.08 kcal Total: -66.93 1.46 -65.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081733866.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.894 kcal (2) G-P(sol) polarization free energy of solvation -66.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds