Wall clock time and date at job start Tue Mar 31 2020 14:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86795 * 120.00128 * 2 1 4 4 H 1.48501 * 109.47203 * 269.99894 * 3 2 1 5 5 H 1.48502 * 109.47210 * 29.99967 * 3 2 1 6 6 H 1.48500 * 109.47377 * 150.00015 * 3 2 1 7 7 C 1.38657 * 119.99698 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99704 * 180.02562 * 7 2 1 9 9 O 1.34832 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.35751 * 116.99923 * 185.05792 * 9 7 2 11 11 C 1.38895 * 120.06773 * 354.46946 * 10 9 7 12 12 C 1.38085 * 119.92925 * 180.02562 * 11 10 9 13 13 C 1.38327 * 120.06494 * 359.97438 * 12 11 10 14 14 C 1.38275 * 120.14162 * 0.02562 * 13 12 11 15 15 C 1.50695 * 119.96644 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.47115 * 89.99809 * 15 14 13 17 17 N 1.30926 * 126.39788 * 90.00163 * 16 15 14 18 18 C 1.35390 * 105.57628 * 179.97438 * 17 16 15 19 19 C 1.47735 * 126.44817 * 180.02562 * 18 17 16 20 20 C 1.34855 * 125.27112 * 179.69606 * 19 18 17 21 21 C 1.37825 * 114.72485 * 179.79169 * 20 19 18 22 22 C 1.33716 * 115.07050 * 0.49697 * 21 20 19 23 23 S 1.75864 * 109.74424 * 359.73289 * 22 21 20 24 24 N 1.31030 * 107.10346 * 359.97438 * 18 17 16 25 25 O 1.21292 * 110.04070 * 0.02562 * 24 18 17 26 26 C 1.38124 * 120.06654 * 0.27352 * 14 13 12 27 27 H 0.96999 * 119.99108 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.04156 * 0.02562 * 11 10 9 29 29 H 1.07997 * 119.96628 * 179.97438 * 12 11 10 30 30 H 1.08005 * 119.92355 * 179.97438 * 13 12 11 31 31 H 1.09006 * 109.47232 * 330.00104 * 15 14 13 32 32 H 1.08997 * 109.47471 * 210.00199 * 15 14 13 33 33 H 1.08008 * 122.63696 * 359.97438 * 20 19 18 34 34 H 1.07998 * 122.46331 * 180.21150 * 21 20 19 35 35 H 1.07997 * 125.13217 * 179.75510 * 22 21 20 36 36 H 1.07997 * 120.03228 * 179.70666 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4401 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5047 0.1056 11 6 3.4573 -3.4395 0.0922 12 6 4.2025 -4.5971 0.1998 13 6 3.5685 -5.8206 0.3213 14 6 2.1875 -5.8887 0.3349 15 6 1.5010 -7.2237 0.4669 16 6 1.2794 -7.5326 1.9252 17 7 0.2271 -7.2135 2.6358 18 6 0.4692 -7.6919 3.8790 19 6 -0.4249 -7.5848 5.0501 20 6 -0.1619 -8.0759 6.2782 21 6 -1.1482 -7.8483 7.2136 22 6 -2.2175 -7.1860 6.7597 23 16 -2.0007 -6.8034 5.0569 24 7 1.6453 -8.2687 3.8477 25 8 2.1201 -8.1844 2.7347 26 6 1.4366 -4.7349 0.2215 27 1 -0.4849 0.8401 -0.0004 28 1 3.9529 -2.4846 -0.0022 29 1 5.2812 -4.5472 0.1890 30 1 4.1536 -6.7246 0.4049 31 1 2.1251 -7.9988 0.0221 32 1 0.5406 -7.1908 -0.0476 33 1 0.7513 -8.6035 6.5112 34 1 -1.0656 -8.1843 8.2366 35 1 -3.0835 -6.9251 7.3498 36 1 0.3580 -4.7893 0.2274 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089643602.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:46 Heat of formation + Delta-G solvation = 102.364867 kcal Electronic energy + Delta-G solvation = -23496.827268 eV Core-core repulsion = 19849.092531 eV Total energy + Delta-G solvation = -3647.734737 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.49189 -39.17098 -38.09047 -36.92754 -35.77685 -33.86571 -32.32650 -31.28109 -29.67611 -29.19350 -27.10148 -25.31446 -25.26498 -23.65008 -22.39661 -21.67611 -20.87712 -19.13223 -18.52570 -18.18506 -17.61211 -17.02686 -16.65496 -15.82493 -15.18624 -14.95052 -14.61676 -14.47639 -13.98995 -13.72550 -13.59171 -13.55608 -13.11131 -12.92272 -12.74176 -12.59641 -12.36834 -11.89761 -11.80751 -11.61754 -11.35241 -11.16117 -11.04040 -10.89440 -10.86018 -10.72537 -10.49936 -10.18655 -9.40569 -8.88680 -8.75909 -8.69720 -8.24579 -7.32782 -6.48325 -4.07707 0.31564 1.24282 1.27300 1.76937 1.90514 2.15871 2.26885 2.79401 2.88803 3.10645 3.11943 3.16576 3.42861 3.93107 4.06814 4.46969 4.78992 4.87307 4.88931 5.06325 5.10449 5.20725 5.30788 5.42823 5.45543 5.58396 5.69787 5.80410 5.85062 5.89143 6.04701 6.07283 6.13667 6.25922 6.53495 6.80776 6.99096 7.12506 7.26937 7.36086 7.69854 7.95664 8.12017 8.96849 9.65475 10.69346 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011628 B = 0.003157 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.356587 B = 8868.283615 C =10593.209950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.092 0.908 9 O -0.175 6.175 10 C 0.151 3.849 11 C -0.226 4.226 12 C -0.075 4.075 13 C -0.199 4.199 14 C -0.063 4.063 15 C 0.019 3.981 16 C 0.210 3.790 17 N -0.472 5.472 18 C 0.236 3.764 19 C -0.129 4.129 20 C -0.096 4.096 21 C -0.140 4.140 22 C -0.214 4.214 23 S 0.197 5.803 24 N -0.374 5.374 25 O 0.083 5.917 26 C -0.168 4.168 27 H 0.271 0.729 28 H 0.128 0.872 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.171 0.829 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.392 -15.737 8.074 17.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.078 6.078 10 C 0.097 3.903 11 C -0.245 4.245 12 C -0.093 4.093 13 C -0.218 4.218 14 C -0.065 4.065 15 C -0.020 4.020 16 C -0.010 4.010 17 N -0.205 5.205 18 C -0.034 4.034 19 C -0.248 4.248 20 C -0.131 4.131 21 C -0.171 4.171 22 C -0.352 4.352 23 S 0.462 5.538 24 N -0.082 5.082 25 O 0.022 5.978 26 C -0.187 4.187 27 H 0.080 0.920 28 H 0.146 0.854 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.188 0.812 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.770 -14.955 7.711 16.919 hybrid contribution 1.510 0.252 1.029 1.844 sum -0.261 -14.703 8.740 17.107 Atomic orbital electron populations 1.70044 1.05956 1.27744 1.45669 1.25297 0.95852 0.98842 0.96452 0.85715 0.78942 0.80054 0.78748 1.19813 1.20203 1.19190 1.21328 0.91797 0.80773 1.53073 0.89047 1.83984 1.34247 1.11388 1.78182 1.19294 0.90238 0.88066 0.92665 1.21257 0.93863 0.99146 1.10274 1.20729 0.98614 0.92185 0.97783 1.20478 0.93119 0.97440 1.10776 1.18836 0.93378 0.91779 1.02483 1.19185 1.04123 0.96864 0.81821 1.28735 0.83861 0.90450 0.97982 1.72112 1.24753 1.22286 1.01300 1.22682 0.91252 0.97571 0.91904 1.21325 0.99444 1.10465 0.93584 1.20324 1.01122 1.00857 0.90810 1.20001 0.93539 1.02398 1.01141 1.26083 1.03868 1.06072 0.99162 1.84668 1.10260 1.53252 1.05609 1.74967 1.11191 1.22040 1.00001 1.85265 1.41841 1.56430 1.14262 1.20069 0.99611 0.89741 1.09311 0.91951 0.85427 0.87159 0.87147 0.87134 0.86308 0.83646 0.83658 0.81170 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.05 13.67 55.48 0.76 -24.29 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 20.36 29.55 -169.99 -5.02 15.34 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.39 -10.90 9.49 30.89 0.29 -10.60 16 8 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 9 O -0.17 -4.94 9.76 0.04 0.00 -4.94 16 10 C 0.15 3.58 6.65 -39.11 -0.26 3.32 16 11 C -0.23 -4.79 9.17 -39.39 -0.36 -5.15 16 12 C -0.07 -1.32 10.04 -39.60 -0.40 -1.71 16 13 C -0.20 -3.20 9.70 -39.54 -0.38 -3.58 16 14 C -0.06 -1.05 5.11 -104.65 -0.54 -1.58 16 15 C 0.02 0.23 5.97 -29.04 -0.17 0.06 16 16 C 0.21 3.09 7.73 -12.98 -0.10 2.99 16 17 N -0.47 -7.87 11.58 -9.89 -0.11 -7.98 16 18 C 0.24 3.82 8.02 -156.05 -1.25 2.57 16 19 C -0.13 -1.82 6.44 -36.90 -0.24 -2.06 16 20 C -0.10 -1.13 10.05 -40.93 -0.41 -1.54 16 21 C -0.14 -1.33 10.16 -41.32 -0.42 -1.75 16 22 C -0.21 -2.00 11.23 29.15 0.33 -1.67 16 23 S 0.20 2.41 23.32 -107.50 -2.51 -0.09 16 24 N -0.37 -5.95 12.16 30.98 0.38 -5.57 16 25 O 0.08 1.23 11.29 18.02 0.20 1.43 16 26 C -0.17 -3.43 9.64 -39.39 -0.38 -3.81 16 27 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 29 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 30 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 31 H 0.11 0.97 8.09 -51.93 -0.42 0.55 16 32 H 0.12 1.31 8.08 -51.93 -0.42 0.89 16 33 H 0.15 1.57 8.06 -52.48 -0.42 1.15 16 34 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 35 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 341.21 15.07 5.14 5.14 Total: -1.00 -32.42 341.21 -8.63 -41.05 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -3.08 Total: 3.41 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -4.39 Total: -23.50 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 1.02 Total: -37.85 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: 0.20 Total: -3.50 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -2.51 Total: -0.09 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.42 -8.63 -41.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089643602.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.419 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds