Wall clock time and date at job start Tue Mar 31 2020 14:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86795 * 120.00128 * 2 1 4 4 H 1.48501 * 109.47203 * 269.99894 * 3 2 1 5 5 H 1.48502 * 109.47210 * 29.99967 * 3 2 1 6 6 H 1.48500 * 109.47377 * 150.00015 * 3 2 1 7 7 C 1.38657 * 119.99698 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99704 * 180.02562 * 7 2 1 9 9 O 1.34832 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.35751 * 116.99923 * 185.05792 * 9 7 2 11 11 C 1.38895 * 120.06773 * 354.46946 * 10 9 7 12 12 C 1.38085 * 119.92925 * 180.02562 * 11 10 9 13 13 C 1.38327 * 120.06494 * 359.97438 * 12 11 10 14 14 C 1.38275 * 120.14162 * 0.02562 * 13 12 11 15 15 C 1.50695 * 119.96644 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.47115 * 89.99809 * 15 14 13 17 17 N 1.30926 * 126.39788 * 90.00163 * 16 15 14 18 18 C 1.35390 * 105.57628 * 179.97438 * 17 16 15 19 19 C 1.47735 * 126.44817 * 180.02562 * 18 17 16 20 20 C 1.34855 * 125.27112 * 179.69606 * 19 18 17 21 21 C 1.37825 * 114.72485 * 179.79169 * 20 19 18 22 22 C 1.33716 * 115.07050 * 0.49697 * 21 20 19 23 23 S 1.75864 * 109.74424 * 359.73289 * 22 21 20 24 24 N 1.31030 * 107.10346 * 359.97438 * 18 17 16 25 25 O 1.21292 * 110.04070 * 0.02562 * 24 18 17 26 26 C 1.38124 * 120.06654 * 0.27352 * 14 13 12 27 27 H 0.96999 * 119.99108 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.04156 * 0.02562 * 11 10 9 29 29 H 1.07997 * 119.96628 * 179.97438 * 12 11 10 30 30 H 1.08005 * 119.92355 * 179.97438 * 13 12 11 31 31 H 1.09006 * 109.47232 * 330.00104 * 15 14 13 32 32 H 1.08997 * 109.47471 * 210.00199 * 15 14 13 33 33 H 1.08008 * 122.63696 * 359.97438 * 20 19 18 34 34 H 1.07998 * 122.46331 * 180.21150 * 21 20 19 35 35 H 1.07997 * 125.13217 * 179.75510 * 22 21 20 36 36 H 1.07997 * 120.03228 * 179.70666 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4401 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5047 0.1056 11 6 3.4573 -3.4395 0.0922 12 6 4.2025 -4.5971 0.1998 13 6 3.5685 -5.8206 0.3213 14 6 2.1875 -5.8887 0.3349 15 6 1.5010 -7.2237 0.4669 16 6 1.2794 -7.5326 1.9252 17 7 0.2271 -7.2135 2.6358 18 6 0.4692 -7.6919 3.8790 19 6 -0.4249 -7.5848 5.0501 20 6 -0.1619 -8.0759 6.2782 21 6 -1.1482 -7.8483 7.2136 22 6 -2.2175 -7.1860 6.7597 23 16 -2.0007 -6.8034 5.0569 24 7 1.6453 -8.2687 3.8477 25 8 2.1201 -8.1844 2.7347 26 6 1.4366 -4.7349 0.2215 27 1 -0.4849 0.8401 -0.0004 28 1 3.9529 -2.4846 -0.0022 29 1 5.2812 -4.5472 0.1890 30 1 4.1536 -6.7246 0.4049 31 1 2.1251 -7.9988 0.0221 32 1 0.5406 -7.1908 -0.0476 33 1 0.7513 -8.6035 6.5112 34 1 -1.0656 -8.1843 8.2366 35 1 -3.0835 -6.9251 7.3498 36 1 0.3580 -4.7893 0.2274 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089643602.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:45 Heat of formation + Delta-G solvation = 81.634226 kcal Electronic energy + Delta-G solvation = -23497.726216 eV Core-core repulsion = 19849.092531 eV Total energy + Delta-G solvation = -3648.633685 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.65848 -40.82943 -38.96064 -38.57175 -36.95096 -35.11676 -34.27150 -32.57427 -30.96150 -30.49161 -28.44714 -27.25873 -26.22644 -24.79998 -23.60058 -23.12887 -22.37297 -20.07148 -19.74554 -19.41747 -19.19774 -18.71430 -17.75306 -16.78566 -16.71962 -16.47285 -16.13308 -15.90978 -15.44481 -15.22648 -14.85763 -14.54982 -14.48320 -14.14664 -13.97516 -13.71871 -13.61181 -13.30725 -12.98637 -12.96157 -12.85635 -12.58374 -12.44941 -12.30740 -12.22628 -12.12901 -11.79122 -11.43786 -11.16157 -10.81837 -9.76123 -9.68580 -9.61272 -9.02794 -8.47854 -6.16576 -0.64040 0.09426 0.35860 0.46751 0.71625 0.92906 1.15035 1.33833 1.43023 1.51342 1.74663 1.82521 2.16502 2.38010 2.80416 2.97456 3.16918 3.40978 3.80692 3.88344 4.08241 4.09279 4.26568 4.34244 4.36226 4.41764 4.53255 4.55159 4.69469 4.73897 4.83021 4.97620 5.02612 5.11026 5.16744 5.26644 5.34670 5.61652 5.68201 5.71767 6.01121 6.18331 6.96637 6.97976 7.77607 8.75379 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011628 B = 0.003157 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.356587 B = 8868.283615 C =10593.209950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.414 4.414 8 H 0.102 0.898 9 O -0.233 6.233 10 C 0.109 3.891 11 C -0.239 4.239 12 C -0.073 4.073 13 C -0.172 4.172 14 C -0.052 4.052 15 C 0.023 3.977 16 C 0.212 3.788 17 N -0.503 5.503 18 C 0.227 3.773 19 C -0.171 4.171 20 C -0.084 4.084 21 C -0.144 4.144 22 C -0.187 4.187 23 S 0.149 5.851 24 N -0.387 5.387 25 O 0.089 5.911 26 C -0.183 4.183 27 H 0.272 0.728 28 H 0.118 0.882 29 H 0.149 0.851 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.131 0.869 33 H 0.153 0.847 34 H 0.182 0.818 35 H 0.206 0.794 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.807 -18.085 9.347 20.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.491 4.491 8 H 0.119 0.881 9 O -0.140 6.140 10 C 0.059 3.941 11 C -0.258 4.258 12 C -0.091 4.091 13 C -0.190 4.190 14 C -0.054 4.054 15 C -0.015 4.015 16 C -0.008 4.008 17 N -0.236 5.236 18 C -0.043 4.043 19 C -0.290 4.290 20 C -0.119 4.119 21 C -0.173 4.173 22 C -0.324 4.324 23 S 0.413 5.587 24 N -0.095 5.095 25 O 0.029 5.971 26 C -0.203 4.203 27 H 0.081 0.919 28 H 0.136 0.864 29 H 0.167 0.833 30 H 0.180 0.820 31 H 0.180 0.820 32 H 0.149 0.851 33 H 0.170 0.830 34 H 0.199 0.801 35 H 0.223 0.777 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.469 -17.366 8.981 19.557 hybrid contribution 0.911 0.589 0.743 1.315 sum 1.380 -16.777 9.724 19.440 Atomic orbital electron populations 1.70196 1.08037 1.28761 1.48833 1.26594 0.96846 1.02746 0.95873 0.84600 0.77766 0.74580 0.79352 1.18569 1.19680 1.17726 1.21821 0.92502 0.81450 1.53277 0.88081 1.83947 1.35949 1.12587 1.81532 1.19891 0.91691 0.87942 0.94615 1.21392 0.93061 1.00513 1.10869 1.21200 1.00486 0.91285 0.96142 1.21151 0.93031 0.98726 1.06098 1.19224 0.93931 0.92248 0.99965 1.19420 1.05615 0.95664 0.80759 1.29067 0.83432 0.89842 0.98437 1.72125 1.26141 1.23230 1.02129 1.23078 0.91595 0.97266 0.92372 1.21513 1.00201 1.13192 0.94108 1.20653 1.01687 0.99238 0.90364 1.20354 0.92609 1.02049 1.02277 1.26491 1.04749 1.04213 0.96938 1.84799 1.10452 1.54363 1.09074 1.74920 1.11316 1.22742 1.00496 1.85227 1.41552 1.56344 1.14019 1.20284 0.99575 0.90327 1.10093 0.91867 0.86402 0.83286 0.82037 0.81960 0.85146 0.82952 0.80065 0.77746 0.87379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.15 13.67 21.62 0.30 -56.86 16 2 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 3 Si 1.02 43.19 29.55 68.60 2.03 45.22 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16 7 C -0.41 -24.35 9.49 67.92 0.64 -23.71 16 8 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 9 O -0.23 -14.21 9.76 -22.78 -0.22 -14.43 16 10 C 0.11 5.40 6.65 22.58 0.15 5.55 16 11 C -0.24 -10.20 9.17 22.39 0.21 -10.00 16 12 C -0.07 -2.35 10.04 22.25 0.22 -2.12 16 13 C -0.17 -4.73 9.70 22.30 0.22 -4.51 16 14 C -0.05 -1.60 5.11 -19.88 -0.10 -1.71 16 15 C 0.02 0.50 5.97 29.10 0.17 0.68 16 16 C 0.21 5.87 7.73 88.35 0.68 6.55 16 17 N -0.50 -16.82 11.58 -302.32 -3.50 -20.32 16 18 C 0.23 7.33 8.02 136.96 1.10 8.43 16 19 C -0.17 -4.83 6.44 24.01 0.15 -4.68 16 20 C -0.08 -1.85 10.05 21.39 0.22 -1.63 16 21 C -0.14 -2.31 10.16 21.14 0.21 -2.10 16 22 C -0.19 -3.04 11.23 66.79 0.75 -2.29 16 23 S 0.15 3.68 23.32 -56.49 -1.32 2.36 16 24 N -0.39 -11.91 12.16 -58.82 -0.72 -12.62 16 25 O 0.09 2.46 11.29 74.56 0.84 3.30 16 26 C -0.18 -7.69 9.64 22.39 0.22 -7.47 16 27 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 28 H 0.12 5.15 5.64 -2.91 -0.02 5.13 16 29 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 30 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 31 H 0.16 1.86 8.09 -2.38 -0.02 1.84 16 32 H 0.13 2.58 8.08 -2.39 -0.02 2.56 16 33 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 34 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 35 H 0.21 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -79.19 341.21 3.86 -75.34 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 1.14 Total: 17.88 kcal Atomic # 6 Polarization: -45.18 SS G_CDS: 5.31 Total: -39.87 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -3.92 Total: -89.80 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.62 Total: -11.13 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 3.68 SS G_CDS: -1.32 Total: 2.36 kcal Total: -79.19 3.86 -75.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089643602.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.970 kcal (2) G-P(sol) polarization free energy of solvation -79.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds