Wall clock time and date at job start Tue Mar 31 2020 14:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.44596 * 123.57786 * 75.39662 * 3 2 1 5 5 C 1.32617 * 113.14725 * 180.26024 * 4 3 2 6 6 S 1.75468 * 110.78071 * 359.78251 * 5 4 3 7 7 C 1.36989 * 123.57941 * 255.23789 * 3 2 1 8 8 N 1.38792 * 124.64407 * 0.02562 * 7 3 2 9 9 C 1.34778 * 119.99886 * 179.71847 * 8 7 3 10 10 O 1.21288 * 120.00251 * 0.02562 * 9 8 7 11 11 C 1.50705 * 120.00154 * 180.02562 * 9 8 7 12 12 C 1.50698 * 109.47120 * 180.02562 * 11 9 8 13 13 C 1.38318 * 119.96497 * 269.72325 * 12 11 9 14 14 C 1.38289 * 120.13668 * 179.76819 * 13 12 11 15 15 C 1.38121 * 120.06635 * 0.50721 * 14 13 12 16 16 C 1.38848 * 119.93347 * 359.74964 * 15 14 13 17 17 O 1.35757 * 120.07053 * 179.97438 * 16 15 14 18 18 C 1.34826 * 116.99900 * 354.48468 * 17 16 15 19 19 H 1.08007 * 119.99883 * 5.05637 * 18 17 16 20 20 C 1.38655 * 119.99933 * 185.05845 * 18 17 16 21 21 N 1.31553 * 120.00201 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99686 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47608 * 59.99847 * 22 20 18 24 24 H 1.48502 * 109.46804 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47176 * 299.99619 * 22 20 18 26 26 C 1.38080 * 119.96529 * 89.99798 * 12 11 9 27 27 H 1.07995 * 123.42614 * 0.02562 * 4 3 2 28 28 H 1.08000 * 124.61322 * 179.77570 * 5 4 3 29 29 H 0.96999 * 120.00636 * 359.71946 * 8 7 3 30 30 H 1.08996 * 109.47230 * 59.99909 * 11 9 8 31 31 H 1.09002 * 109.46596 * 300.00023 * 11 9 8 32 32 H 1.07999 * 119.93165 * 0.02562 * 13 12 11 33 33 H 1.08004 * 119.96320 * 180.25570 * 14 13 12 34 34 H 1.08000 * 120.03207 * 179.76859 * 15 14 13 35 35 H 0.96993 * 120.00169 * 180.02562 * 21 20 18 36 36 H 1.07997 * 120.03524 * 359.95606 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3678 -0.3027 -1.1658 5 6 4.6720 -0.2470 -0.9320 6 16 4.9871 0.1890 0.7382 7 6 3.3255 0.2918 1.1036 8 7 2.8104 0.6195 2.3501 9 6 3.6442 0.8841 3.3754 10 8 4.8447 0.8364 3.2087 11 6 3.0850 1.2394 4.7290 12 6 4.2180 1.4872 5.6913 13 6 4.7300 0.4425 6.4394 14 6 5.7728 0.6650 7.3200 15 6 6.2994 1.9339 7.4626 16 6 5.7841 2.9857 6.7169 17 8 6.2992 4.2341 6.8552 18 6 7.2307 4.4091 7.8141 19 1 7.5943 3.5607 8.3750 20 6 7.7218 5.6782 8.0802 21 7 7.2793 6.7114 7.3967 22 14 9.0130 5.9204 9.4082 23 1 10.2243 5.1304 9.0711 24 1 9.3686 7.3596 9.4961 25 1 8.4720 5.4642 10.7138 26 6 4.7401 2.7580 5.8293 27 1 2.9460 -0.5532 -2.1279 28 1 5.4363 -0.4433 -1.6693 29 1 1.8504 0.6580 2.4834 30 1 2.4701 0.4174 5.0952 31 1 2.4761 2.1396 4.6456 32 1 4.3173 -0.5497 6.3326 33 1 6.1732 -0.1536 7.8997 34 1 7.1113 2.1077 8.1532 35 1 7.6231 7.5991 7.5826 36 1 4.3375 3.5740 5.2476 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089720866.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:07 Heat of formation + Delta-G solvation = 26.733727 kcal Electronic energy + Delta-G solvation = -23264.471839 eV Core-core repulsion = 19613.457489 eV Total energy + Delta-G solvation = -3651.014350 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.71687 -39.05124 -38.33948 -36.61131 -36.11942 -34.93944 -32.55146 -32.15317 -29.64645 -29.12384 -27.28217 -25.37188 -24.85618 -22.24382 -21.69690 -21.34732 -20.51704 -19.20897 -17.99635 -17.66310 -16.99047 -16.31747 -16.03959 -15.50844 -15.11498 -14.69796 -14.64785 -14.43616 -14.30909 -14.19041 -13.59012 -13.55266 -13.44100 -12.94112 -12.90318 -12.66334 -12.50987 -12.18591 -12.00571 -11.63335 -11.42669 -11.22877 -11.20322 -10.88663 -10.83668 -10.69507 -10.48511 -10.03414 -9.38418 -8.85729 -8.67322 -8.42439 -8.16768 -7.27678 -6.46187 -4.05554 0.45523 1.00714 1.72186 1.72954 1.95460 2.26549 2.32421 2.45826 2.63759 3.12492 3.13349 3.16183 3.25294 3.85552 3.95056 4.34650 4.64147 4.67634 4.85411 4.94013 4.99585 5.09685 5.33809 5.40142 5.52701 5.60039 5.67155 5.85400 5.86950 5.92099 6.11056 6.27100 6.55228 6.69181 6.84897 7.02248 7.16587 7.29182 7.31479 7.39339 7.58070 7.75549 7.98230 8.99302 9.68663 10.71757 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020017 B = 0.002486 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.466470 B =11261.486382 C =11608.821598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.279 3.721 3 C -0.138 4.138 4 C -0.072 4.072 5 C -0.289 4.289 6 S 0.329 5.671 7 C 0.069 3.931 8 N -0.639 5.639 9 C 0.507 3.493 10 O -0.473 6.473 11 C -0.086 4.086 12 C -0.041 4.041 13 C -0.196 4.196 14 C -0.073 4.073 15 C -0.227 4.227 16 C 0.154 3.846 17 O -0.177 6.177 18 C -0.392 4.392 19 H 0.091 0.909 20 C 0.040 3.960 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.172 4.172 27 H 0.148 0.852 28 H 0.171 0.829 29 H 0.419 0.581 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.127 0.873 35 H 0.271 0.729 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.325 -14.004 -11.662 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.110 5.110 2 C -0.036 4.036 3 C -0.159 4.159 4 C -0.102 4.102 5 C -0.425 4.425 6 S 0.591 5.409 7 C -0.153 4.153 8 N -0.283 5.283 9 C 0.295 3.705 10 O -0.345 6.345 11 C -0.126 4.126 12 C -0.042 4.042 13 C -0.215 4.215 14 C -0.092 4.092 15 C -0.247 4.247 16 C 0.101 3.899 17 O -0.081 6.081 18 C -0.469 4.469 19 H 0.109 0.891 20 C -0.164 4.164 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.192 4.192 27 H 0.165 0.835 28 H 0.188 0.812 29 H 0.256 0.744 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.145 0.855 35 H 0.080 0.920 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.881 -13.311 -10.980 18.230 hybrid contribution -0.850 -0.112 -0.199 0.880 sum -6.731 -13.423 -11.179 18.720 Atomic orbital electron populations 1.81287 1.11641 1.10965 1.07064 1.24951 0.91699 0.92929 0.94021 1.15986 0.85447 1.20537 0.93967 1.20589 0.91804 1.00643 0.97142 1.26009 1.00175 1.12259 1.04059 1.84719 0.94283 1.62480 0.99459 1.22224 1.02193 1.02256 0.88645 1.43202 1.11651 1.66970 1.06505 1.21483 0.86903 0.75936 0.86169 1.90699 1.14572 1.47481 1.81773 1.20559 0.98497 1.04418 0.89096 1.18549 0.95971 0.93412 0.96258 1.20344 1.01548 0.97294 1.02268 1.20688 0.95437 0.95934 0.97094 1.21205 1.04909 0.92986 1.05564 1.19258 0.91438 0.86138 0.93086 1.83977 1.50414 1.23126 1.50560 1.21273 1.16991 0.94763 1.13840 0.89118 1.25279 0.98560 0.94197 0.98411 1.70022 1.41432 0.99390 1.38929 0.85790 0.79875 0.77916 0.79906 1.19472 1.20278 1.19508 1.19941 0.99435 0.96355 1.03448 0.83451 0.81156 0.74380 0.87416 0.87280 0.87829 0.87353 0.85523 0.91956 0.86721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.40 18.54 41.84 0.78 -4.62 16 2 C 0.28 2.99 14.98 -22.48 -0.34 2.65 16 3 C -0.14 -1.31 5.88 -105.92 -0.62 -1.93 16 4 C -0.07 -0.56 10.35 -38.98 -0.40 -0.96 16 5 C -0.29 -2.15 11.10 28.83 0.32 -1.83 16 6 S 0.33 3.30 19.96 -107.50 -2.15 1.15 16 7 C 0.07 0.70 6.98 -14.85 -0.10 0.60 16 8 N -0.64 -6.17 5.37 -11.61 -0.06 -6.23 16 9 C 0.51 6.13 7.78 -10.98 -0.09 6.04 16 10 O -0.47 -7.38 13.46 5.55 0.07 -7.30 16 11 C -0.09 -0.96 5.83 -29.03 -0.17 -1.13 16 12 C -0.04 -0.68 4.37 -104.65 -0.46 -1.13 16 13 C -0.20 -3.20 9.70 -39.53 -0.38 -3.58 16 14 C -0.07 -1.31 10.04 -39.61 -0.40 -1.70 16 15 C -0.23 -4.85 9.17 -39.40 -0.36 -5.21 16 16 C 0.15 3.66 6.65 -39.11 -0.26 3.40 16 17 O -0.18 -5.00 9.76 0.04 0.00 -5.00 16 18 C -0.39 -10.84 9.49 30.89 0.29 -10.55 16 19 H 0.09 2.31 5.20 -52.48 -0.27 2.04 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -25.09 13.67 55.48 0.76 -24.33 16 22 Si 0.94 20.29 29.55 -169.99 -5.02 15.27 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 C -0.17 -3.49 9.65 -39.39 -0.38 -3.87 16 27 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 28 H 0.17 0.85 8.06 -52.49 -0.42 0.42 16 29 H 0.42 3.07 8.15 -40.82 -0.33 2.74 16 30 H 0.11 0.87 8.08 -51.93 -0.42 0.45 16 31 H 0.11 1.01 8.08 -51.93 -0.42 0.59 16 32 H 0.10 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 34 H 0.13 2.70 5.64 -52.49 -0.30 2.40 16 35 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.11 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 342.84 15.07 5.17 5.17 Total: -1.00 -33.22 342.84 -6.89 -40.11 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -2.99 Total: 4.02 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -3.44 Total: -18.22 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 1.47 Total: -35.19 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.08 Total: -12.30 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -2.15 Total: 1.15 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.22 -6.89 -40.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089720866.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.841 kcal (2) G-P(sol) polarization free energy of solvation -33.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds