Wall clock time and date at job start Tue Mar 31 2020 14:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.44596 * 123.57786 * 75.39662 * 3 2 1 5 5 C 1.32617 * 113.14725 * 180.26024 * 4 3 2 6 6 S 1.75468 * 110.78071 * 359.78251 * 5 4 3 7 7 C 1.36989 * 123.57941 * 255.23789 * 3 2 1 8 8 N 1.38792 * 124.64407 * 0.02562 * 7 3 2 9 9 C 1.34778 * 119.99886 * 179.71847 * 8 7 3 10 10 O 1.21288 * 120.00251 * 0.02562 * 9 8 7 11 11 C 1.50705 * 120.00154 * 180.02562 * 9 8 7 12 12 C 1.50698 * 109.47120 * 180.02562 * 11 9 8 13 13 C 1.38318 * 119.96497 * 269.72325 * 12 11 9 14 14 C 1.38289 * 120.13668 * 179.76819 * 13 12 11 15 15 C 1.38121 * 120.06635 * 0.50721 * 14 13 12 16 16 C 1.38848 * 119.93347 * 359.74964 * 15 14 13 17 17 O 1.35757 * 120.07053 * 179.97438 * 16 15 14 18 18 C 1.34826 * 116.99900 * 354.48468 * 17 16 15 19 19 H 1.08007 * 119.99883 * 5.05637 * 18 17 16 20 20 C 1.38655 * 119.99933 * 185.05845 * 18 17 16 21 21 N 1.31553 * 120.00201 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99686 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47608 * 59.99847 * 22 20 18 24 24 H 1.48502 * 109.46804 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47176 * 299.99619 * 22 20 18 26 26 C 1.38080 * 119.96529 * 89.99798 * 12 11 9 27 27 H 1.07995 * 123.42614 * 0.02562 * 4 3 2 28 28 H 1.08000 * 124.61322 * 179.77570 * 5 4 3 29 29 H 0.96999 * 120.00636 * 359.71946 * 8 7 3 30 30 H 1.08996 * 109.47230 * 59.99909 * 11 9 8 31 31 H 1.09002 * 109.46596 * 300.00023 * 11 9 8 32 32 H 1.07999 * 119.93165 * 0.02562 * 13 12 11 33 33 H 1.08004 * 119.96320 * 180.25570 * 14 13 12 34 34 H 1.08000 * 120.03207 * 179.76859 * 15 14 13 35 35 H 0.96993 * 120.00169 * 180.02562 * 21 20 18 36 36 H 1.07997 * 120.03524 * 359.95606 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3678 -0.3027 -1.1658 5 6 4.6720 -0.2470 -0.9320 6 16 4.9871 0.1890 0.7382 7 6 3.3255 0.2918 1.1036 8 7 2.8104 0.6195 2.3501 9 6 3.6442 0.8841 3.3754 10 8 4.8447 0.8364 3.2087 11 6 3.0850 1.2394 4.7290 12 6 4.2180 1.4872 5.6913 13 6 4.7300 0.4425 6.4394 14 6 5.7728 0.6650 7.3200 15 6 6.2994 1.9339 7.4626 16 6 5.7841 2.9857 6.7169 17 8 6.2992 4.2341 6.8552 18 6 7.2307 4.4091 7.8141 19 1 7.5943 3.5607 8.3750 20 6 7.7218 5.6782 8.0802 21 7 7.2793 6.7114 7.3967 22 14 9.0130 5.9204 9.4082 23 1 10.2243 5.1304 9.0711 24 1 9.3686 7.3596 9.4961 25 1 8.4720 5.4642 10.7138 26 6 4.7401 2.7580 5.8293 27 1 2.9460 -0.5532 -2.1279 28 1 5.4363 -0.4433 -1.6693 29 1 1.8504 0.6580 2.4834 30 1 2.4701 0.4174 5.0952 31 1 2.4761 2.1396 4.6456 32 1 4.3173 -0.5497 6.3326 33 1 6.1732 -0.1536 7.8997 34 1 7.1113 2.1077 8.1532 35 1 7.6231 7.5991 7.5826 36 1 4.3375 3.5740 5.2476 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089720866.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:07 Heat of formation + Delta-G solvation = 5.513758 kcal Electronic energy + Delta-G solvation = -23265.392006 eV Core-core repulsion = 19613.457489 eV Total energy + Delta-G solvation = -3651.934517 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.67654 -40.62949 -39.22494 -38.20869 -37.00062 -35.77164 -34.33967 -33.58886 -30.97390 -30.25975 -28.46738 -27.25689 -25.74453 -23.41954 -23.10702 -22.34416 -21.63015 -20.09009 -19.40179 -18.89109 -18.68754 -17.12979 -17.04744 -16.69691 -16.36721 -16.16693 -16.07058 -15.56839 -15.33956 -15.21896 -15.08765 -14.90197 -14.35790 -14.26259 -14.01926 -13.72397 -13.71880 -13.53799 -12.98722 -12.91812 -12.89666 -12.49451 -12.41291 -12.21779 -12.13196 -12.06860 -11.97941 -11.19295 -10.91669 -10.77888 -9.65597 -9.42487 -9.17259 -8.96844 -8.45560 -6.13897 -0.32721 0.27217 0.48466 0.77251 1.06056 1.07479 1.35441 1.37802 1.46006 1.51606 1.63167 1.75418 2.18859 2.45020 2.84223 3.04834 3.17023 3.42307 3.64684 3.93161 3.99300 4.11143 4.29543 4.31423 4.39286 4.57799 4.58338 4.75924 4.78378 4.93251 5.05927 5.14138 5.20941 5.29575 5.31542 5.65528 5.73182 5.76357 5.90334 6.04185 6.25138 6.45665 6.71833 6.99276 7.80759 8.77634 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020017 B = 0.002486 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.466470 B =11261.486382 C =11608.821598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.297 3.703 3 C -0.133 4.133 4 C -0.076 4.076 5 C -0.268 4.268 6 S 0.288 5.712 7 C 0.056 3.944 8 N -0.627 5.627 9 C 0.511 3.489 10 O -0.516 6.516 11 C -0.085 4.085 12 C -0.030 4.030 13 C -0.175 4.175 14 C -0.073 4.073 15 C -0.244 4.244 16 C 0.111 3.889 17 O -0.234 6.234 18 C -0.413 4.413 19 H 0.101 0.899 20 C -0.023 4.023 21 N -0.922 5.922 22 Si 1.017 2.983 23 H -0.258 1.258 24 H -0.272 1.272 25 H -0.257 1.257 26 C -0.188 4.188 27 H 0.173 0.827 28 H 0.199 0.801 29 H 0.430 0.570 30 H 0.153 0.847 31 H 0.130 0.870 32 H 0.150 0.850 33 H 0.144 0.856 34 H 0.116 0.884 35 H 0.272 0.728 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.297 -17.166 -12.277 22.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.017 4.017 3 C -0.155 4.155 4 C -0.105 4.105 5 C -0.403 4.403 6 S 0.550 5.450 7 C -0.166 4.166 8 N -0.272 5.272 9 C 0.300 3.700 10 O -0.390 6.390 11 C -0.123 4.123 12 C -0.031 4.031 13 C -0.194 4.194 14 C -0.091 4.091 15 C -0.263 4.263 16 C 0.061 3.939 17 O -0.141 6.141 18 C -0.489 4.489 19 H 0.118 0.882 20 C -0.220 4.220 21 N -0.560 5.560 22 Si 0.836 3.164 23 H -0.182 1.182 24 H -0.197 1.197 25 H -0.181 1.181 26 C -0.207 4.207 27 H 0.190 0.810 28 H 0.216 0.784 29 H 0.270 0.730 30 H 0.171 0.829 31 H 0.148 0.852 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.134 0.866 35 H 0.081 0.919 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.908 -16.540 -11.619 21.361 hybrid contribution -0.745 0.546 -0.214 0.948 sum -7.653 -15.994 -11.834 21.317 Atomic orbital electron populations 1.81314 1.12574 1.12123 1.08166 1.25023 0.91693 0.92003 0.93029 1.16165 0.84859 1.20054 0.94465 1.20879 0.91668 1.00373 0.97534 1.26217 1.00753 1.10719 1.02654 1.84930 0.95014 1.63111 1.01961 1.22273 1.02123 1.03270 0.88913 1.42967 1.11985 1.66266 1.06004 1.21495 0.86437 0.75375 0.86729 1.90714 1.16246 1.49510 1.82572 1.20675 0.96921 1.07283 0.87467 1.19041 0.96283 0.91567 0.96193 1.20981 0.99620 0.99102 0.99674 1.21130 0.95410 0.95204 0.97385 1.21317 1.05221 0.94181 1.05584 1.19876 0.93171 0.85655 0.95150 1.83936 1.52228 1.25696 1.52227 1.21767 1.17370 0.95581 1.14217 0.88211 1.26569 1.00968 0.93517 1.00979 1.70174 1.44118 0.99977 1.41753 0.84670 0.76831 0.78102 0.76757 1.18240 1.19657 1.18092 1.20220 0.99182 0.98293 1.03036 0.80957 0.78423 0.72993 0.82931 0.85204 0.83258 0.83781 0.86579 0.91887 0.87369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.79 18.54 19.00 0.35 -10.44 16 2 C 0.30 5.72 14.98 88.33 1.32 7.05 16 3 C -0.13 -2.22 5.88 -20.71 -0.12 -2.35 16 4 C -0.08 -0.94 10.35 22.73 0.24 -0.71 16 5 C -0.27 -3.24 11.10 66.66 0.74 -2.50 16 6 S 0.29 5.42 19.96 -56.49 -1.13 4.29 16 7 C 0.06 1.04 6.98 83.30 0.58 1.62 16 8 N -0.63 -10.65 5.37 -309.03 -1.66 -12.31 16 9 C 0.51 11.18 7.78 87.66 0.68 11.86 16 10 O -0.52 -15.50 13.46 -3.05 -0.04 -15.54 16 11 C -0.08 -1.59 5.83 29.10 0.17 -1.42 16 12 C -0.03 -0.92 4.37 -19.88 -0.09 -1.01 16 13 C -0.18 -5.07 9.70 22.30 0.22 -4.85 16 14 C -0.07 -2.45 10.04 22.25 0.22 -2.22 16 15 C -0.24 -10.60 9.17 22.39 0.21 -10.39 16 16 C 0.11 5.55 6.65 22.58 0.15 5.70 16 17 O -0.23 -14.19 9.76 -22.78 -0.22 -14.41 16 18 C -0.41 -24.25 9.49 67.92 0.64 -23.60 16 19 H 0.10 5.37 5.20 -2.91 -0.02 5.35 16 20 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 21 N -0.92 -56.94 13.67 21.61 0.30 -56.64 16 22 Si 1.02 43.00 29.55 68.60 2.03 45.03 16 23 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 26 C -0.19 -7.79 9.65 22.39 0.22 -7.58 16 27 H 0.17 1.31 8.06 -2.91 -0.02 1.28 16 28 H 0.20 1.26 8.06 -2.91 -0.02 1.24 16 29 H 0.43 5.10 8.15 -92.71 -0.76 4.34 16 30 H 0.15 1.57 8.08 -2.39 -0.02 1.55 16 31 H 0.13 1.99 8.08 -2.39 -0.02 1.97 16 32 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 33 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 34 H 0.12 5.16 5.64 -2.91 -0.02 5.14 16 35 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 36 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -79.57 342.84 5.68 -73.90 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.41 Total: 17.40 kcal Atomic # 6 Polarization: -36.91 SS G_CDS: 5.64 Total: -31.27 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -1.01 Total: -79.40 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.26 Total: -29.95 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 5.42 SS G_CDS: -1.13 Total: 4.29 kcal Total: -79.57 5.68 -73.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089720866.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.412 kcal (2) G-P(sol) polarization free energy of solvation -79.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds