Wall clock time and date at job start Tue Mar 31 2020 14:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31592 * 122.23444 * 2 1 4 4 C 1.29948 * 117.13760 * 180.26642 * 3 2 1 5 5 N 1.38892 * 125.36268 * 179.74594 * 4 3 2 6 6 C 1.34777 * 119.99878 * 180.02562 * 5 4 3 7 7 O 1.21290 * 119.99727 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.99901 * 180.02562 * 6 5 4 9 9 H 1.09006 * 110.45989 * 300.70266 * 8 6 5 10 10 C 1.54510 * 110.51237 * 63.30690 * 8 6 5 11 11 C 1.54485 * 104.06333 * 118.64375 * 10 8 6 12 12 O 1.44430 * 104.80349 * 23.97804 * 11 10 8 13 13 C 1.44646 * 105.36906 * 319.56912 * 12 11 10 14 14 H 1.08995 * 110.33607 * 281.59011 * 13 12 11 15 15 C 1.53000 * 110.50994 * 159.18170 * 13 12 11 16 16 S 1.76137 * 109.27137 * 359.74538 * 4 3 2 17 17 C 1.34658 * 122.22710 * 179.78709 * 2 1 3 18 18 S 1.76203 * 125.93175 * 0.04185 * 17 2 1 19 19 C 1.76201 * 99.99911 * 179.71197 * 18 17 2 20 20 H 1.07997 * 119.99868 * 359.97438 * 19 18 17 21 21 C 1.38435 * 119.99560 * 179.97438 * 19 18 17 22 22 N 1.31808 * 120.00264 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99456 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46989 * 180.02562 * 23 21 19 25 25 H 1.48500 * 109.47563 * 300.00149 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00184 * 23 21 19 27 27 H 1.08996 * 109.47199 * 270.21302 * 1 2 3 28 28 H 1.09003 * 109.47074 * 30.20790 * 1 2 3 29 29 H 1.08998 * 109.47431 * 150.20959 * 1 2 3 30 30 H 0.97000 * 119.99743 * 0.02932 * 5 4 3 31 31 H 1.09004 * 110.51255 * 237.28840 * 10 8 6 32 32 H 1.09003 * 110.51159 * 0.02562 * 10 8 6 33 33 H 1.08997 * 110.37400 * 142.80854 * 11 10 8 34 34 H 1.08999 * 110.37252 * 265.15024 * 11 10 8 35 35 H 1.09000 * 109.47301 * 304.66889 * 15 13 12 36 36 H 1.09000 * 109.46955 * 64.66922 * 15 13 12 37 37 H 1.09001 * 109.47377 * 184.66981 * 15 13 12 38 38 H 0.97001 * 119.99687 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2089 1.1131 0.0000 4 6 3.5032 0.9977 -0.0054 5 7 4.4045 2.0544 -0.0113 6 6 5.7298 1.8097 -0.0171 7 8 6.1354 0.6667 -0.0176 8 6 6.7077 2.9563 -0.0230 9 1 6.5542 3.5836 -0.9012 10 6 6.5703 3.7917 1.2696 11 6 7.9553 3.6711 1.9434 12 8 8.8656 3.3677 0.8640 13 6 8.1594 2.4299 0.0190 14 1 8.1884 1.4312 0.4548 15 6 8.7620 2.4164 -1.3873 16 16 3.9346 -0.7101 -0.0039 17 6 2.2251 -1.1391 0.0042 18 16 1.5696 -2.7747 0.0093 19 6 3.0664 -3.7042 0.0046 20 1 4.0185 -3.1945 -0.0005 21 6 3.0218 -5.0879 0.0073 22 7 1.8598 -5.7099 0.0129 23 14 4.6087 -6.0733 0.0016 24 1 4.2906 -7.5239 0.0051 25 1 5.3929 -5.7420 -1.2152 26 1 5.4043 -5.7376 1.2097 27 1 -0.3633 0.0038 1.0276 28 1 -0.3633 0.8881 -0.5171 29 1 -0.3634 -0.8918 -0.5106 30 1 4.0800 2.9686 -0.0113 31 1 6.3513 4.8323 1.0303 32 1 5.7954 3.3750 1.9131 33 1 8.2298 4.6133 2.4177 34 1 7.9521 2.8635 2.6754 35 1 8.7628 3.4285 -1.7920 36 1 9.7849 2.0429 -1.3407 37 1 8.1675 1.7681 -2.0311 38 1 1.8286 -6.6794 0.0144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092334537.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:37 Heat of formation + Delta-G solvation = -50.381249 kcal Electronic energy + Delta-G solvation = -22931.509761 eV Core-core repulsion = 19412.595407 eV Total energy + Delta-G solvation = -3518.914355 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.89519 -39.09576 -38.35161 -34.87889 -32.86605 -32.83589 -31.78387 -30.44880 -27.24416 -26.87154 -25.78873 -24.02722 -22.57429 -21.86354 -20.83389 -19.61775 -18.26828 -17.66030 -17.08005 -16.33959 -16.09101 -15.71569 -15.55407 -15.19927 -15.12303 -14.37474 -14.05059 -13.86550 -13.81349 -13.22658 -12.84328 -12.70822 -12.58026 -12.28978 -12.01074 -11.89789 -11.64691 -11.42708 -11.41884 -11.26441 -11.14824 -11.08529 -10.81014 -10.62195 -10.29853 -10.11031 -9.84041 -9.55097 -9.10721 -8.78233 -8.69240 -7.84179 -6.62123 -6.53450 -4.30265 1.33169 1.84452 2.35429 2.49207 2.78450 3.05970 3.11152 3.14054 3.32179 3.52970 3.57823 3.96160 4.11983 4.27067 4.40039 4.65273 4.80625 4.87110 4.88991 5.01032 5.11925 5.18288 5.24098 5.32036 5.40940 5.52286 5.58420 5.80997 5.93378 5.95188 6.10290 6.20762 6.41667 6.45478 6.51294 6.91998 7.11060 7.30708 7.87979 8.01621 8.47920 8.86256 10.43570 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013850 B = 0.003746 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.170960 B = 7472.351998 C = 9102.247370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.018 3.982 3 N -0.474 5.474 4 C 0.184 3.816 5 N -0.612 5.612 6 C 0.514 3.486 7 O -0.501 6.501 8 C -0.133 4.133 9 H 0.117 0.883 10 C -0.149 4.149 11 C 0.046 3.954 12 O -0.370 6.370 13 C 0.085 3.915 14 H 0.093 0.907 15 C -0.145 4.145 16 S 0.200 5.800 17 C -0.250 4.250 18 S 0.152 5.848 19 C -0.558 4.558 20 H 0.088 0.912 21 C 0.083 3.917 22 N -0.863 5.863 23 Si 0.925 3.075 24 H -0.278 1.278 25 H -0.267 1.267 26 H -0.267 1.267 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.414 0.586 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.678 17.496 0.627 19.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.125 4.125 3 N -0.195 5.195 4 C -0.187 4.187 5 N -0.261 5.261 6 C 0.299 3.701 7 O -0.375 6.375 8 C -0.155 4.155 9 H 0.135 0.865 10 C -0.188 4.188 11 C -0.031 4.031 12 O -0.289 6.289 13 C 0.028 3.972 14 H 0.111 0.889 15 C -0.203 4.203 16 S 0.444 5.556 17 C -0.487 4.487 18 S 0.403 5.597 19 C -0.707 4.707 20 H 0.106 0.894 21 C -0.128 4.128 22 N -0.496 5.496 23 Si 0.749 3.251 24 H -0.203 1.203 25 H -0.192 1.192 26 H -0.192 1.192 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.252 0.748 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.670 15.937 0.595 17.697 hybrid contribution 0.798 0.391 0.042 0.889 sum 8.467 16.328 0.637 18.404 Atomic orbital electron populations 1.20116 0.88026 1.02131 1.01793 1.19033 0.96709 0.84576 1.12150 1.65806 1.02825 1.32423 1.18428 1.23768 0.89889 0.92886 1.12185 1.42377 1.04344 1.08109 1.71284 1.20524 0.81864 0.91066 0.76681 1.90712 1.76913 1.22303 1.47558 1.22710 0.95603 0.95621 1.01584 0.86528 1.23021 0.99539 1.01012 0.95180 1.23389 0.87622 1.01600 0.90448 1.89176 1.38753 1.63585 1.37407 1.22992 0.87110 0.94133 0.93001 0.88911 1.21799 1.01954 1.02684 0.93815 1.85827 1.01820 0.95399 1.72601 1.28783 1.01256 1.06768 1.11891 1.83075 1.10985 0.84354 1.81309 1.23227 0.93563 0.94063 1.59804 0.89384 1.25023 0.98285 0.96648 0.92856 1.70002 1.24449 1.10435 1.44687 0.86084 0.81155 0.78112 0.79733 1.20332 1.19186 1.19194 0.91881 0.91932 0.91030 0.74834 0.89198 0.89712 0.88586 0.91813 0.91834 0.91367 0.90653 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.06 10.02 36.01 0.36 -0.69 16 2 C 0.02 0.37 6.73 -83.96 -0.57 -0.19 16 3 N -0.47 -9.30 10.55 -9.78 -0.10 -9.41 16 4 C 0.18 3.43 8.40 -87.19 -0.73 2.70 16 5 N -0.61 -8.47 5.35 -11.78 -0.06 -8.53 16 6 C 0.51 6.90 6.92 -10.99 -0.08 6.83 16 7 O -0.50 -8.70 12.98 5.55 0.07 -8.63 16 8 C -0.13 -1.25 3.05 -90.20 -0.27 -1.53 16 9 H 0.12 0.84 7.87 -51.93 -0.41 0.44 16 10 C -0.15 -1.11 6.70 -25.16 -0.17 -1.28 16 11 C 0.05 0.38 7.64 37.94 0.29 0.67 16 12 O -0.37 -4.01 11.35 -35.23 -0.40 -4.41 16 13 C 0.09 0.92 3.27 -25.95 -0.08 0.83 16 14 H 0.09 1.18 6.93 -51.93 -0.36 0.82 16 15 C -0.15 -1.35 9.52 37.16 0.35 -1.00 16 16 S 0.20 4.33 18.35 -107.50 -1.97 2.36 16 17 C -0.25 -5.71 6.67 29.46 0.20 -5.51 16 18 S 0.15 3.79 20.74 -107.50 -2.23 1.56 16 19 C -0.56 -15.11 9.26 30.80 0.29 -14.83 16 20 H 0.09 2.36 5.97 -52.49 -0.31 2.05 16 21 C 0.08 2.21 5.49 -17.49 -0.10 2.11 16 22 N -0.86 -23.66 13.22 55.47 0.73 -22.93 16 23 Si 0.92 20.60 29.55 -169.99 -5.02 15.57 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.24 7.37 -51.93 -0.38 0.85 16 30 H 0.41 4.29 8.82 -40.82 -0.36 3.93 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.66 7.72 -51.93 -0.40 0.26 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.28 7.09 8.32 -40.82 -0.34 6.75 16 LS Contribution 345.23 15.07 5.20 5.20 Total: -1.00 -31.48 345.23 -9.04 -40.52 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -4.74 Total: 0.59 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -0.51 Total: -11.90 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.57 Total: -40.87 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.33 Total: -13.04 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 8.12 SS G_CDS: -4.20 Total: 3.92 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.48 -9.04 -40.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092334537.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.862 kcal (2) G-P(sol) polarization free energy of solvation -31.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds