Wall clock time and date at job start Tue Mar 31 2020 14:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31592 * 122.23444 * 2 1 4 4 C 1.29948 * 117.13760 * 180.26642 * 3 2 1 5 5 N 1.38892 * 125.36268 * 179.74594 * 4 3 2 6 6 C 1.34777 * 119.99878 * 180.02562 * 5 4 3 7 7 O 1.21290 * 119.99727 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.99901 * 180.02562 * 6 5 4 9 9 H 1.09006 * 110.45989 * 300.70266 * 8 6 5 10 10 C 1.54510 * 110.51237 * 63.30690 * 8 6 5 11 11 C 1.54485 * 104.06333 * 118.64375 * 10 8 6 12 12 O 1.44430 * 104.80349 * 23.97804 * 11 10 8 13 13 C 1.44646 * 105.36906 * 319.56912 * 12 11 10 14 14 H 1.08995 * 110.33607 * 281.59011 * 13 12 11 15 15 C 1.53000 * 110.50994 * 159.18170 * 13 12 11 16 16 S 1.76137 * 109.27137 * 359.74538 * 4 3 2 17 17 C 1.34658 * 122.22710 * 179.78709 * 2 1 3 18 18 S 1.76203 * 125.93175 * 0.04185 * 17 2 1 19 19 C 1.76201 * 99.99911 * 179.71197 * 18 17 2 20 20 H 1.07997 * 119.99868 * 359.97438 * 19 18 17 21 21 C 1.38435 * 119.99560 * 179.97438 * 19 18 17 22 22 N 1.31808 * 120.00264 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99456 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46989 * 180.02562 * 23 21 19 25 25 H 1.48500 * 109.47563 * 300.00149 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00184 * 23 21 19 27 27 H 1.08996 * 109.47199 * 270.21302 * 1 2 3 28 28 H 1.09003 * 109.47074 * 30.20790 * 1 2 3 29 29 H 1.08998 * 109.47431 * 150.20959 * 1 2 3 30 30 H 0.97000 * 119.99743 * 0.02932 * 5 4 3 31 31 H 1.09004 * 110.51255 * 237.28840 * 10 8 6 32 32 H 1.09003 * 110.51159 * 0.02562 * 10 8 6 33 33 H 1.08997 * 110.37400 * 142.80854 * 11 10 8 34 34 H 1.08999 * 110.37252 * 265.15024 * 11 10 8 35 35 H 1.09000 * 109.47301 * 304.66889 * 15 13 12 36 36 H 1.09000 * 109.46955 * 64.66922 * 15 13 12 37 37 H 1.09001 * 109.47377 * 184.66981 * 15 13 12 38 38 H 0.97001 * 119.99687 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2089 1.1131 0.0000 4 6 3.5032 0.9977 -0.0054 5 7 4.4045 2.0544 -0.0113 6 6 5.7298 1.8097 -0.0171 7 8 6.1354 0.6667 -0.0176 8 6 6.7077 2.9563 -0.0230 9 1 6.5542 3.5836 -0.9012 10 6 6.5703 3.7917 1.2696 11 6 7.9553 3.6711 1.9434 12 8 8.8656 3.3677 0.8640 13 6 8.1594 2.4299 0.0190 14 1 8.1884 1.4312 0.4548 15 6 8.7620 2.4164 -1.3873 16 16 3.9346 -0.7101 -0.0039 17 6 2.2251 -1.1391 0.0042 18 16 1.5696 -2.7747 0.0093 19 6 3.0664 -3.7042 0.0046 20 1 4.0185 -3.1945 -0.0005 21 6 3.0218 -5.0879 0.0073 22 7 1.8598 -5.7099 0.0129 23 14 4.6087 -6.0733 0.0016 24 1 4.2906 -7.5239 0.0051 25 1 5.3929 -5.7420 -1.2152 26 1 5.4043 -5.7376 1.2097 27 1 -0.3633 0.0038 1.0276 28 1 -0.3633 0.8881 -0.5171 29 1 -0.3634 -0.8918 -0.5106 30 1 4.0800 2.9686 -0.0113 31 1 6.3513 4.8323 1.0303 32 1 5.7954 3.3750 1.9131 33 1 8.2298 4.6133 2.4177 34 1 7.9521 2.8635 2.6754 35 1 8.7628 3.4285 -1.7920 36 1 9.7849 2.0429 -1.3407 37 1 8.1675 1.7681 -2.0311 38 1 1.8286 -6.6794 0.0144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092334537.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:36 Heat of formation + Delta-G solvation = -71.323027 kcal Electronic energy + Delta-G solvation = -22932.417865 eV Core-core repulsion = 19412.595407 eV Total energy + Delta-G solvation = -3519.822458 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.97410 -40.42579 -39.58880 -36.23284 -34.82646 -33.73035 -32.53667 -31.86422 -28.81542 -27.85029 -27.68543 -25.29813 -23.36586 -22.94618 -22.12538 -21.00051 -19.84875 -19.15678 -18.39020 -17.49046 -17.26529 -17.07977 -16.92287 -16.41402 -16.37477 -15.83489 -15.44374 -15.01292 -14.92916 -14.58084 -14.39055 -13.67992 -13.51760 -13.41707 -13.30557 -13.28781 -13.08001 -12.89306 -12.84466 -12.47572 -12.22486 -12.15092 -12.12322 -12.04945 -11.82427 -11.35309 -11.31737 -10.87843 -10.73142 -10.49857 -10.48246 -9.54255 -8.58554 -8.38357 -6.31036 -0.25468 0.20241 0.81122 1.12391 1.25776 1.34853 1.38583 1.46025 1.62105 1.99501 2.13676 2.75390 2.80854 3.08364 3.37200 3.44254 3.52681 3.77194 3.97851 4.13829 4.23694 4.35060 4.42806 4.56211 4.64721 4.67939 4.81543 4.84612 4.89831 4.95444 4.99190 5.01198 5.06881 5.21033 5.28223 5.46257 5.76019 5.90064 6.00794 6.70858 6.84936 6.86169 8.49000 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013850 B = 0.003746 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.170960 B = 7472.351998 C = 9102.247370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.037 3.963 3 N -0.480 5.480 4 C 0.226 3.774 5 N -0.599 5.599 6 C 0.516 3.484 7 O -0.537 6.537 8 C -0.122 4.122 9 H 0.151 0.849 10 C -0.142 4.142 11 C 0.038 3.962 12 O -0.382 6.382 13 C 0.081 3.919 14 H 0.063 0.937 15 C -0.143 4.143 16 S 0.156 5.844 17 C -0.281 4.281 18 S 0.101 5.899 19 C -0.578 4.578 20 H 0.080 0.920 21 C 0.037 3.963 22 N -0.895 5.895 23 Si 0.983 3.017 24 H -0.263 1.263 25 H -0.265 1.265 26 H -0.265 1.265 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.437 0.563 31 H 0.125 0.875 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.549 20.923 0.541 22.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 N -0.202 5.202 4 C -0.147 4.147 5 N -0.251 5.251 6 C 0.303 3.697 7 O -0.412 6.412 8 C -0.143 4.143 9 H 0.169 0.831 10 C -0.180 4.180 11 C -0.039 4.039 12 O -0.302 6.302 13 C 0.023 3.977 14 H 0.081 0.919 15 C -0.201 4.201 16 S 0.400 5.600 17 C -0.516 4.516 18 S 0.349 5.651 19 C -0.726 4.726 20 H 0.098 0.902 21 C -0.170 4.170 22 N -0.530 5.530 23 Si 0.805 3.195 24 H -0.188 1.188 25 H -0.190 1.190 26 H -0.190 1.190 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.279 0.721 31 H 0.144 0.856 32 H 0.101 0.899 33 H 0.140 0.860 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.553 19.437 0.514 21.242 hybrid contribution 0.656 -0.300 0.103 0.729 sum 9.210 19.137 0.617 21.247 Atomic orbital electron populations 1.20245 0.85667 1.03152 1.03102 1.19704 0.98425 0.84163 1.08198 1.66025 1.02664 1.31295 1.20230 1.24119 0.90226 0.92966 1.07425 1.42537 1.03858 1.07972 1.70719 1.21454 0.81851 0.91709 0.74661 1.90722 1.77326 1.24498 1.48693 1.22787 0.92987 0.94195 1.04319 0.83099 1.23086 0.98801 1.02521 0.93608 1.23610 0.87924 1.02489 0.89858 1.89174 1.39706 1.63255 1.38047 1.22930 0.88259 0.92997 0.93518 0.91948 1.21788 1.01606 1.03718 0.92940 1.86040 1.02289 0.98227 1.73399 1.28591 1.01658 1.06034 1.15360 1.82888 1.11131 0.86218 1.84892 1.23419 0.93897 0.94863 1.60402 0.90176 1.25860 1.01326 0.97404 0.92451 1.70081 1.26150 1.10794 1.45965 0.85210 0.77375 0.77355 0.79608 1.18757 1.18954 1.19015 0.90325 0.89430 0.91409 0.72139 0.85642 0.89915 0.86029 0.92927 0.89861 0.91616 0.91267 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.06 10.02 71.24 0.71 -1.34 16 2 C 0.04 1.48 6.73 41.77 0.28 1.77 16 3 N -0.48 -17.82 10.55 -184.87 -1.95 -19.77 16 4 C 0.23 8.03 8.40 179.15 1.50 9.53 16 5 N -0.60 -14.77 5.35 -309.58 -1.66 -16.43 16 6 C 0.52 12.73 6.92 87.66 0.61 13.33 16 7 O -0.54 -18.41 12.98 -3.06 -0.04 -18.45 16 8 C -0.12 -1.87 3.05 -10.52 -0.03 -1.90 16 9 H 0.15 1.40 7.87 -2.38 -0.02 1.38 16 10 C -0.14 -1.52 6.70 31.61 0.21 -1.31 16 11 C 0.04 0.51 7.64 72.49 0.55 1.07 16 12 O -0.38 -7.44 11.35 -148.98 -1.69 -9.13 16 13 C 0.08 1.60 3.27 31.10 0.10 1.70 16 14 H 0.06 1.61 6.93 -2.39 -0.02 1.59 16 15 C -0.14 -2.41 9.52 71.98 0.69 -1.73 16 16 S 0.16 6.85 18.35 -56.49 -1.04 5.81 16 17 C -0.28 -13.06 6.67 67.00 0.45 -12.62 16 18 S 0.10 5.26 20.74 -56.49 -1.17 4.09 16 19 C -0.58 -32.62 9.26 67.87 0.63 -31.99 16 20 H 0.08 4.51 5.97 -2.91 -0.02 4.49 16 21 C 0.04 2.02 5.49 84.74 0.47 2.49 16 22 N -0.90 -50.71 13.22 21.59 0.29 -50.42 16 23 Si 0.98 43.15 29.55 68.60 2.03 45.18 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 25 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 27 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.07 2.32 7.37 -2.39 -0.02 2.30 16 30 H 0.44 7.12 8.82 -92.71 -0.82 6.30 16 31 H 0.13 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.08 0.97 7.72 -2.39 -0.02 0.95 16 33 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.28 14.75 8.32 -92.71 -0.77 13.98 16 Total: -1.00 -71.34 345.23 1.22 -70.12 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.29 Total: 10.01 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 6.17 Total: -21.00 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -3.32 Total: -86.62 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -1.73 Total: -27.58 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 12.11 SS G_CDS: -2.21 Total: 9.90 kcal Total: -71.34 1.22 -70.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092334537.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.207 kcal (2) G-P(sol) polarization free energy of solvation -71.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds