Wall clock time and date at job start Tue Mar 31 2020 14:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.31594 * 122.23296 * 2 1 4 4 C 1.29946 * 117.14040 * 179.97438 * 3 2 1 5 5 N 1.38891 * 125.36504 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99994 * 179.97438 * 5 4 3 7 7 O 1.21286 * 120.00059 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00043 * 179.97438 * 6 5 4 9 9 H 1.09000 * 110.45869 * 61.14384 * 8 6 5 10 10 C 1.54507 * 110.50850 * 298.54323 * 8 6 5 11 11 C 1.54483 * 104.06211 * 241.35520 * 10 8 6 12 12 O 1.44428 * 104.89902 * 335.96812 * 11 10 8 13 13 C 1.44688 * 105.13885 * 40.49479 * 12 11 10 14 14 H 1.08999 * 110.44929 * 78.41250 * 13 12 11 15 15 C 1.52997 * 110.35139 * 200.67550 * 13 12 11 16 16 S 1.76137 * 109.26917 * 0.25898 * 4 3 2 17 17 C 1.34660 * 122.23244 * 179.97438 * 2 1 3 18 18 S 1.76199 * 125.92655 * 0.02662 * 17 2 1 19 19 C 1.76204 * 99.99846 * 179.97438 * 18 17 2 20 20 H 1.08000 * 119.99902 * 359.97438 * 19 18 17 21 21 C 1.38430 * 119.99841 * 179.97438 * 19 18 17 22 22 N 1.31805 * 120.00318 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99591 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47613 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47407 * 120.00091 * 23 21 19 26 26 H 1.48506 * 109.46990 * 239.99524 * 23 21 19 27 27 H 1.09006 * 109.47306 * 90.02369 * 1 2 3 28 28 H 1.08996 * 109.47443 * 210.02312 * 1 2 3 29 29 H 1.08996 * 109.47397 * 330.02313 * 1 2 3 30 30 H 0.97002 * 120.00086 * 359.97438 * 5 4 3 31 31 H 1.09005 * 110.51421 * 122.71091 * 10 8 6 32 32 H 1.09001 * 110.51335 * 0.02562 * 10 8 6 33 33 H 1.09002 * 110.37322 * 94.85326 * 11 10 8 34 34 H 1.08999 * 110.37312 * 217.08002 * 11 10 8 35 35 H 1.09008 * 109.47018 * 175.40975 * 15 13 12 36 36 H 1.08994 * 109.47454 * 295.41064 * 15 13 12 37 37 H 1.09000 * 109.47283 * 55.41637 * 15 13 12 38 38 H 0.97000 * 120.00299 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5031 0.9978 0.0005 5 7 4.4043 2.0546 0.0011 6 6 5.7297 1.8100 0.0021 7 8 6.1355 0.6670 0.0030 8 6 6.7076 2.9566 0.0022 9 1 6.5792 3.5668 0.8962 10 6 6.5336 3.8165 -1.2696 11 6 7.8987 3.7095 -1.9848 12 8 8.8415 3.3870 -0.9392 13 6 8.1572 2.4317 -0.0950 14 1 8.1726 1.4415 -0.5503 15 6 8.8024 2.3892 1.2917 16 16 3.9345 -0.7099 -0.0064 17 6 2.2251 -1.1391 0.0005 18 16 1.5696 -2.7746 0.0006 19 6 3.0665 -3.7041 0.0006 20 1 4.0187 -3.1944 0.0001 21 6 3.0220 -5.0877 0.0012 22 7 1.8600 -5.7098 0.0022 23 14 4.6090 -6.0731 0.0004 24 1 5.7681 -5.1449 -0.0014 25 1 4.6612 -6.9285 1.2132 26 1 4.6593 -6.9295 -1.2118 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3634 0.8901 0.5134 30 1 4.0799 2.9687 0.0008 31 1 6.3216 4.8523 -1.0044 32 1 5.7400 3.4125 -1.8982 33 1 7.8746 2.9160 -2.7318 34 1 8.1588 4.6601 -2.4503 35 1 8.2276 1.7274 1.9397 36 1 9.8233 2.0172 1.2062 37 1 8.8157 3.3926 1.7172 38 1 1.8289 -6.6793 0.0023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092334538.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:39 Heat of formation + Delta-G solvation = -50.374276 kcal Electronic energy + Delta-G solvation = -22934.092023 eV Core-core repulsion = 19415.177971 eV Total energy + Delta-G solvation = -3518.914052 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.89745 -39.09698 -38.35409 -34.88322 -32.87077 -32.83814 -31.77765 -30.44704 -27.24326 -26.86885 -25.79132 -24.02143 -22.58211 -21.86476 -20.83281 -19.61924 -18.27156 -17.65355 -17.07904 -16.34696 -16.09053 -15.71421 -15.55698 -15.19934 -15.12842 -14.37639 -14.05353 -13.85776 -13.81500 -13.22432 -12.84271 -12.71581 -12.57323 -12.29212 -12.00665 -11.89805 -11.64700 -11.42886 -11.39604 -11.29767 -11.14999 -11.08941 -10.79844 -10.62706 -10.26724 -10.11003 -9.84157 -9.57058 -9.10334 -8.78613 -8.68385 -7.84144 -6.62514 -6.53399 -4.30416 1.33194 1.84518 2.35518 2.49349 2.78403 3.06438 3.07106 3.16720 3.33728 3.53764 3.57792 3.95839 4.11074 4.27393 4.39922 4.64977 4.80370 4.87059 4.88671 5.01093 5.12143 5.18265 5.24029 5.32057 5.40812 5.52045 5.58728 5.80927 5.93782 5.95193 6.10256 6.20696 6.41659 6.45415 6.50504 6.91975 7.11035 7.31134 7.87991 8.02178 8.47895 8.86288 10.43296 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013876 B = 0.003746 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.447374 B = 7472.300089 C = 9109.202184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.018 3.982 3 N -0.474 5.474 4 C 0.184 3.816 5 N -0.612 5.612 6 C 0.514 3.486 7 O -0.501 6.501 8 C -0.133 4.133 9 H 0.117 0.883 10 C -0.150 4.150 11 C 0.046 3.954 12 O -0.369 6.369 13 C 0.085 3.915 14 H 0.093 0.907 15 C -0.146 4.146 16 S 0.200 5.800 17 C -0.250 4.250 18 S 0.151 5.849 19 C -0.556 4.556 20 H 0.089 0.911 21 C 0.082 3.918 22 N -0.862 5.862 23 Si 0.924 3.076 24 H -0.264 1.264 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.414 0.586 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.667 17.531 -0.718 19.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.124 4.124 3 N -0.195 5.195 4 C -0.187 4.187 5 N -0.261 5.261 6 C 0.299 3.701 7 O -0.375 6.375 8 C -0.155 4.155 9 H 0.135 0.865 10 C -0.188 4.188 11 C -0.031 4.031 12 O -0.288 6.288 13 C 0.028 3.972 14 H 0.111 0.889 15 C -0.203 4.203 16 S 0.444 5.556 17 C -0.487 4.487 18 S 0.401 5.599 19 C -0.705 4.705 20 H 0.107 0.893 21 C -0.129 4.129 22 N -0.496 5.496 23 Si 0.749 3.251 24 H -0.188 1.188 25 H -0.200 1.200 26 H -0.200 1.200 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.252 0.748 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.667 15.979 -0.693 17.737 hybrid contribution 0.782 0.375 -0.029 0.868 sum 8.449 16.355 -0.722 18.422 Atomic orbital electron populations 1.20114 0.88027 1.02128 1.01798 1.19033 0.96709 0.84575 1.12130 1.65806 1.02829 1.32425 1.18440 1.23772 0.89891 0.92900 1.12161 1.42379 1.04344 1.08108 1.71296 1.20525 0.81865 0.91060 0.76687 1.90713 1.76912 1.22305 1.47532 1.22702 0.95527 0.95498 1.01750 0.86460 1.23028 0.99621 1.00859 0.95302 1.23380 0.87242 1.01536 0.90954 1.89208 1.37812 1.62203 1.39614 1.22987 0.87436 0.93776 0.93047 0.88939 1.21802 1.01718 1.02666 0.94084 1.85845 1.01792 0.95367 1.72578 1.28781 1.01263 1.06763 1.11891 1.83084 1.11047 0.84384 1.81343 1.23312 0.93591 0.94054 1.59569 0.89268 1.25028 0.98286 0.96672 0.92881 1.70017 1.24385 1.10293 1.44857 0.85990 0.81317 0.79461 0.78365 1.18769 1.19965 1.19972 0.91873 0.91033 0.91933 0.74835 0.89200 0.89697 0.91827 0.88605 0.90638 0.91380 0.91846 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.06 10.02 36.00 0.36 -0.70 16 2 C 0.02 0.38 6.73 -83.97 -0.57 -0.19 16 3 N -0.47 -9.31 10.55 -9.79 -0.10 -9.41 16 4 C 0.18 3.43 8.40 -87.20 -0.73 2.70 16 5 N -0.61 -8.47 5.29 -11.78 -0.06 -8.53 16 6 C 0.51 6.91 6.94 -10.98 -0.08 6.83 16 7 O -0.50 -8.71 13.00 5.55 0.07 -8.64 16 8 C -0.13 -1.25 3.05 -90.21 -0.28 -1.52 16 9 H 0.12 0.85 7.88 -51.93 -0.41 0.44 16 10 C -0.15 -1.11 6.67 -25.16 -0.17 -1.28 16 11 C 0.05 0.38 7.62 37.94 0.29 0.67 16 12 O -0.37 -4.00 11.37 -35.23 -0.40 -4.40 16 13 C 0.09 0.92 3.25 -25.96 -0.08 0.83 16 14 H 0.09 1.18 6.96 -51.93 -0.36 0.82 16 15 C -0.15 -1.36 9.52 37.16 0.35 -1.01 16 16 S 0.20 4.35 18.35 -107.50 -1.97 2.38 16 17 C -0.25 -5.71 6.67 29.47 0.20 -5.51 16 18 S 0.15 3.76 20.74 -107.50 -2.23 1.53 16 19 C -0.56 -15.07 9.26 30.80 0.29 -14.79 16 20 H 0.09 2.40 5.97 -52.49 -0.31 2.09 16 21 C 0.08 2.19 5.49 -17.49 -0.10 2.09 16 22 N -0.86 -23.64 13.22 55.47 0.73 -22.91 16 23 Si 0.92 20.58 29.55 -169.99 -5.02 15.56 16 24 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.24 7.37 -51.93 -0.38 0.85 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.41 4.29 8.80 -40.82 -0.36 3.93 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.65 7.68 -51.93 -0.40 0.25 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.28 7.02 8.32 -40.82 -0.34 6.68 16 LS Contribution 345.14 15.07 5.20 5.20 Total: -1.00 -31.53 345.14 -9.04 -40.57 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.74 Total: 0.52 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -0.51 Total: -11.87 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.57 Total: -40.85 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.33 Total: -13.04 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 8.11 SS G_CDS: -4.20 Total: 3.91 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.53 -9.04 -40.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092334538.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.803 kcal (2) G-P(sol) polarization free energy of solvation -31.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds