Wall clock time and date at job start Tue Mar 31 2020 14:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.31594 * 122.23296 * 2 1 4 4 C 1.29946 * 117.14040 * 179.97438 * 3 2 1 5 5 N 1.38891 * 125.36504 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99994 * 179.97438 * 5 4 3 7 7 O 1.21286 * 120.00059 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00043 * 179.97438 * 6 5 4 9 9 H 1.09000 * 110.45869 * 61.14384 * 8 6 5 10 10 C 1.54507 * 110.50850 * 298.54323 * 8 6 5 11 11 C 1.54483 * 104.06211 * 241.35520 * 10 8 6 12 12 O 1.44428 * 104.89902 * 335.96812 * 11 10 8 13 13 C 1.44688 * 105.13885 * 40.49479 * 12 11 10 14 14 H 1.08999 * 110.44929 * 78.41250 * 13 12 11 15 15 C 1.52997 * 110.35139 * 200.67550 * 13 12 11 16 16 S 1.76137 * 109.26917 * 0.25898 * 4 3 2 17 17 C 1.34660 * 122.23244 * 179.97438 * 2 1 3 18 18 S 1.76199 * 125.92655 * 0.02662 * 17 2 1 19 19 C 1.76204 * 99.99846 * 179.97438 * 18 17 2 20 20 H 1.08000 * 119.99902 * 359.97438 * 19 18 17 21 21 C 1.38430 * 119.99841 * 179.97438 * 19 18 17 22 22 N 1.31805 * 120.00318 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99591 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47613 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47407 * 120.00091 * 23 21 19 26 26 H 1.48506 * 109.46990 * 239.99524 * 23 21 19 27 27 H 1.09006 * 109.47306 * 90.02369 * 1 2 3 28 28 H 1.08996 * 109.47443 * 210.02312 * 1 2 3 29 29 H 1.08996 * 109.47397 * 330.02313 * 1 2 3 30 30 H 0.97002 * 120.00086 * 359.97438 * 5 4 3 31 31 H 1.09005 * 110.51421 * 122.71091 * 10 8 6 32 32 H 1.09001 * 110.51335 * 0.02562 * 10 8 6 33 33 H 1.09002 * 110.37322 * 94.85326 * 11 10 8 34 34 H 1.08999 * 110.37312 * 217.08002 * 11 10 8 35 35 H 1.09008 * 109.47018 * 175.40975 * 15 13 12 36 36 H 1.08994 * 109.47454 * 295.41064 * 15 13 12 37 37 H 1.09000 * 109.47283 * 55.41637 * 15 13 12 38 38 H 0.97000 * 120.00299 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5031 0.9978 0.0005 5 7 4.4043 2.0546 0.0011 6 6 5.7297 1.8100 0.0021 7 8 6.1355 0.6670 0.0030 8 6 6.7076 2.9566 0.0022 9 1 6.5792 3.5668 0.8962 10 6 6.5336 3.8165 -1.2696 11 6 7.8987 3.7095 -1.9848 12 8 8.8415 3.3870 -0.9392 13 6 8.1572 2.4317 -0.0950 14 1 8.1726 1.4415 -0.5503 15 6 8.8024 2.3892 1.2917 16 16 3.9345 -0.7099 -0.0064 17 6 2.2251 -1.1391 0.0005 18 16 1.5696 -2.7746 0.0006 19 6 3.0665 -3.7041 0.0006 20 1 4.0187 -3.1944 0.0001 21 6 3.0220 -5.0877 0.0012 22 7 1.8600 -5.7098 0.0022 23 14 4.6090 -6.0731 0.0004 24 1 5.7681 -5.1449 -0.0014 25 1 4.6612 -6.9285 1.2132 26 1 4.6593 -6.9295 -1.2118 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3634 0.8901 0.5134 30 1 4.0799 2.9687 0.0008 31 1 6.3216 4.8523 -1.0044 32 1 5.7400 3.4125 -1.8982 33 1 7.8746 2.9160 -2.7318 34 1 8.1588 4.6601 -2.4503 35 1 8.2276 1.7274 1.9397 36 1 9.8233 2.0172 1.2062 37 1 8.8157 3.3926 1.7172 38 1 1.8289 -6.6793 0.0023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092334538.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:39 Heat of formation + Delta-G solvation = -71.348558 kcal Electronic energy + Delta-G solvation = -22935.001537 eV Core-core repulsion = 19415.177971 eV Total energy + Delta-G solvation = -3519.823565 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.97684 -40.42620 -39.59282 -36.23766 -34.82770 -33.73671 -32.53411 -31.86058 -28.81638 -27.84871 -27.68654 -25.29430 -23.37281 -22.94541 -22.12646 -21.00221 -19.85328 -19.15421 -18.38738 -17.49130 -17.27408 -17.08698 -16.92111 -16.41364 -16.37473 -15.83188 -15.44800 -15.01216 -14.93086 -14.58002 -14.39835 -13.68151 -13.51679 -13.40537 -13.30238 -13.28550 -13.08348 -12.90590 -12.84630 -12.47353 -12.22622 -12.15468 -12.12327 -12.04475 -11.82555 -11.36189 -11.31058 -10.87764 -10.73723 -10.49809 -10.47857 -9.54354 -8.58908 -8.38279 -6.31157 -0.25522 0.20245 0.81252 1.12347 1.26012 1.31866 1.39245 1.47628 1.62734 1.99454 2.13302 2.76069 2.80468 3.08373 3.36357 3.44185 3.52981 3.77156 3.97514 4.13446 4.23705 4.35024 4.42774 4.56120 4.64752 4.67903 4.81553 4.84628 4.89956 4.95439 4.99157 5.01124 5.06692 5.20944 5.28880 5.46266 5.75171 5.89957 6.01288 6.70787 6.84865 6.86253 8.49109 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013876 B = 0.003746 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.447374 B = 7472.300089 C = 9109.202184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.037 3.963 3 N -0.480 5.480 4 C 0.226 3.774 5 N -0.599 5.599 6 C 0.516 3.484 7 O -0.537 6.537 8 C -0.121 4.121 9 H 0.152 0.848 10 C -0.143 4.143 11 C 0.037 3.963 12 O -0.382 6.382 13 C 0.081 3.919 14 H 0.062 0.938 15 C -0.144 4.144 16 S 0.155 5.845 17 C -0.281 4.281 18 S 0.100 5.900 19 C -0.576 4.576 20 H 0.080 0.920 21 C 0.036 3.964 22 N -0.895 5.895 23 Si 0.985 3.015 24 H -0.269 1.269 25 H -0.263 1.263 26 H -0.263 1.263 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.437 0.563 31 H 0.125 0.875 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.122 0.878 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.499 20.926 -0.634 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 N -0.202 5.202 4 C -0.147 4.147 5 N -0.251 5.251 6 C 0.303 3.697 7 O -0.412 6.412 8 C -0.142 4.142 9 H 0.169 0.831 10 C -0.181 4.181 11 C -0.039 4.039 12 O -0.301 6.301 13 C 0.023 3.977 14 H 0.080 0.920 15 C -0.201 4.201 16 S 0.400 5.600 17 C -0.516 4.516 18 S 0.348 5.652 19 C -0.724 4.724 20 H 0.098 0.902 21 C -0.171 4.171 22 N -0.530 5.530 23 Si 0.806 3.194 24 H -0.193 1.193 25 H -0.188 1.188 26 H -0.188 1.188 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.279 0.721 31 H 0.144 0.856 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.139 0.861 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.509 19.446 -0.613 21.235 hybrid contribution 0.652 -0.309 -0.093 0.728 sum 9.161 19.137 -0.706 21.229 Atomic orbital electron populations 1.20244 0.85659 1.03158 1.03105 1.19705 0.98426 0.84158 1.08180 1.66026 1.02661 1.31296 1.20234 1.24119 0.90226 0.92965 1.07408 1.42537 1.03856 1.07972 1.70728 1.21457 0.81855 0.91702 0.74664 1.90724 1.77329 1.24510 1.48678 1.22777 0.92900 0.94062 1.04501 0.83063 1.23092 0.98900 1.02304 0.93766 1.23603 0.87474 1.02454 0.90411 1.89205 1.38810 1.61869 1.40213 1.22922 0.88604 0.92685 0.93496 0.91972 1.21789 1.01350 1.03661 0.93272 1.86065 1.02301 0.98228 1.73401 1.28588 1.01638 1.06036 1.15366 1.82891 1.11173 0.86235 1.84907 1.23483 0.93875 0.94852 1.60210 0.90180 1.25863 1.01330 0.97422 0.92478 1.70091 1.26070 1.10728 1.46108 0.85098 0.77216 0.77996 0.79080 1.19346 1.18766 1.18803 0.90311 0.91411 0.89429 0.72135 0.85641 0.89847 0.92915 0.86052 0.91300 0.91633 0.89873 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.06 10.02 71.23 0.71 -1.34 16 2 C 0.04 1.49 6.73 41.77 0.28 1.77 16 3 N -0.48 -17.83 10.55 -184.88 -1.95 -19.78 16 4 C 0.23 8.04 8.40 179.15 1.50 9.55 16 5 N -0.60 -14.79 5.29 -309.57 -1.64 -16.43 16 6 C 0.52 12.76 6.94 87.66 0.61 13.37 16 7 O -0.54 -18.47 13.00 -3.05 -0.04 -18.51 16 8 C -0.12 -1.87 3.05 -10.53 -0.03 -1.90 16 9 H 0.15 1.42 7.88 -2.39 -0.02 1.40 16 10 C -0.14 -1.52 6.67 31.61 0.21 -1.31 16 11 C 0.04 0.50 7.62 72.49 0.55 1.06 16 12 O -0.38 -7.42 11.37 -148.98 -1.69 -9.12 16 13 C 0.08 1.61 3.25 31.10 0.10 1.71 16 14 H 0.06 1.61 6.96 -2.39 -0.02 1.59 16 15 C -0.14 -2.44 9.52 71.98 0.69 -1.75 16 16 S 0.16 6.85 18.35 -56.49 -1.04 5.81 16 17 C -0.28 -13.06 6.67 67.00 0.45 -12.62 16 18 S 0.10 5.22 20.74 -56.49 -1.17 4.05 16 19 C -0.58 -32.54 9.26 67.87 0.63 -31.91 16 20 H 0.08 4.53 5.97 -2.91 -0.02 4.51 16 21 C 0.04 1.99 5.49 84.74 0.47 2.46 16 22 N -0.90 -50.63 13.22 21.59 0.29 -50.35 16 23 Si 0.98 43.21 29.55 68.60 2.03 45.24 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 27 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 28 H 0.07 2.32 7.37 -2.39 -0.02 2.30 16 29 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.44 7.12 8.80 -92.71 -0.82 6.31 16 31 H 0.13 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.08 0.96 7.68 -2.39 -0.02 0.94 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.28 14.64 8.32 -92.71 -0.77 13.87 16 Total: -1.00 -71.47 345.14 1.24 -70.23 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.29 Total: 9.78 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 6.17 Total: -20.92 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -3.30 Total: -86.55 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -1.73 Total: -27.63 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 12.07 SS G_CDS: -2.21 Total: 9.86 kcal Total: -71.47 1.24 -70.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092334538.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.118 kcal (2) G-P(sol) polarization free energy of solvation -71.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds