Wall clock time and date at job start Tue Mar 31 2020 14:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31591 * 122.23114 * 2 1 4 4 C 1.29941 * 117.13909 * 180.02562 * 3 2 1 5 5 N 1.38897 * 125.36650 * 179.97438 * 4 3 2 6 6 C 1.34775 * 120.00235 * 179.97438 * 5 4 3 7 7 O 1.21289 * 119.99622 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99842 * 179.72667 * 6 5 4 9 9 H 1.08999 * 110.45693 * 26.02018 * 8 6 5 10 10 C 1.54516 * 110.50749 * 148.76873 * 8 6 5 11 11 C 1.54482 * 104.06318 * 118.64647 * 10 8 6 12 12 O 1.44421 * 104.80167 * 336.02012 * 11 10 8 13 13 C 1.44429 * 105.27592 * 40.51134 * 12 11 10 14 14 H 1.09001 * 110.46252 * 78.37190 * 13 12 11 15 15 C 1.53002 * 110.36982 * 200.65340 * 13 12 11 16 16 S 1.76143 * 109.26993 * 0.24347 * 4 3 2 17 17 C 1.34652 * 122.23134 * 180.02562 * 2 1 3 18 18 S 1.76203 * 125.93089 * 359.97438 * 17 2 1 19 19 C 1.76198 * 99.99956 * 179.97438 * 18 17 2 20 20 H 1.07992 * 120.00123 * 359.97438 * 19 18 17 21 21 C 1.38430 * 119.99689 * 179.97438 * 19 18 17 22 22 N 1.31815 * 120.00092 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00385 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47383 * 89.99461 * 23 21 19 25 25 H 1.48503 * 109.47047 * 210.00094 * 23 21 19 26 26 H 1.48502 * 109.46646 * 329.99718 * 23 21 19 27 27 H 1.08998 * 109.47313 * 89.97677 * 1 2 3 28 28 H 1.08999 * 109.47299 * 209.97783 * 1 2 3 29 29 H 1.09003 * 109.47396 * 329.98240 * 1 2 3 30 30 H 0.97004 * 119.99849 * 0.02562 * 5 4 3 31 31 H 1.09007 * 110.50740 * 237.28828 * 10 8 6 32 32 H 1.08998 * 110.51159 * 359.97438 * 10 8 6 33 33 H 1.09000 * 110.36841 * 217.18845 * 11 10 8 34 34 H 1.08998 * 110.37045 * 94.85408 * 11 10 8 35 35 H 1.08997 * 109.46810 * 169.19619 * 15 13 12 36 36 H 1.08995 * 109.47599 * 289.20148 * 15 13 12 37 37 H 1.09004 * 109.47048 * 49.20605 * 15 13 12 38 38 H 0.96996 * 120.00217 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5031 0.9978 -0.0005 5 7 4.4044 2.0546 -0.0011 6 6 5.7297 1.8100 -0.0011 7 8 6.1354 0.6670 -0.0010 8 6 6.7075 2.9567 -0.0080 9 1 6.2568 3.8444 0.4359 10 6 8.0011 2.5696 0.7432 11 6 9.1059 2.6782 -0.3311 12 8 8.4153 2.5122 -1.5886 13 6 7.1838 3.2534 -1.4472 14 1 7.3646 4.3207 -1.5747 15 6 6.1485 2.7647 -2.4622 16 16 3.9345 -0.7100 -0.0082 17 6 2.2251 -1.1390 -0.0005 18 16 1.5697 -2.7746 -0.0006 19 6 3.0665 -3.7041 -0.0021 20 1 4.0186 -3.1944 -0.0031 21 6 3.0221 -5.0877 -0.0021 22 7 4.1419 -5.7831 -0.0037 23 14 1.3752 -5.9693 -0.0011 24 1 0.9379 -6.2029 -1.4008 25 1 1.5115 -7.2719 0.6989 26 1 0.3671 -5.1339 0.6996 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3634 0.8898 0.5141 30 1 4.0799 2.9688 -0.0008 31 1 8.1920 3.2666 1.5592 32 1 7.9331 1.5490 1.1199 33 1 9.8447 1.8882 -0.1967 34 1 9.5833 3.6570 -0.2867 35 1 5.1746 3.1912 -2.2218 36 1 6.4451 3.0777 -3.4632 37 1 6.0880 1.6770 -2.4246 38 1 4.1107 -6.7525 -0.0033 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092334539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:42 Heat of formation + Delta-G solvation = -43.683533 kcal Electronic energy + Delta-G solvation = -23212.402809 eV Core-core repulsion = 19693.778890 eV Total energy + Delta-G solvation = -3518.623920 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.99031 -39.08431 -38.31433 -34.83868 -32.81992 -32.75248 -31.77601 -30.54025 -27.24497 -26.80630 -25.89779 -24.29073 -22.38750 -21.99994 -20.84132 -19.44893 -18.04414 -17.87548 -17.11869 -16.49284 -15.96639 -15.77832 -15.54780 -15.32115 -15.22373 -14.45773 -14.13322 -13.89704 -13.23647 -13.20042 -12.78703 -12.65254 -12.50932 -12.33137 -12.17365 -11.99698 -11.58363 -11.54213 -11.36527 -11.34993 -11.27750 -11.22281 -10.78202 -10.61497 -10.14456 -10.09678 -9.81985 -9.46406 -9.17313 -8.85985 -8.77600 -7.89546 -6.73325 -6.55277 -4.28789 1.29865 1.78985 2.37214 2.44864 2.74847 2.87628 3.10527 3.19840 3.37414 3.48894 3.60593 4.03073 4.10293 4.29595 4.48263 4.49973 4.74763 4.81878 4.84574 4.96725 5.02822 5.10844 5.13473 5.29490 5.51263 5.55160 5.65480 5.83821 5.85294 5.97592 6.05765 6.11477 6.33335 6.39298 6.57164 6.86212 7.10543 7.67546 7.93552 8.24326 8.41481 8.84317 10.52610 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.017235 B = 0.003666 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.238391 B = 7635.223985 C = 8805.447889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.030 3.970 3 N -0.481 5.481 4 C 0.192 3.808 5 N -0.616 5.616 6 C 0.517 3.483 7 O -0.491 6.491 8 C -0.134 4.134 9 H 0.108 0.892 10 C -0.144 4.144 11 C 0.048 3.952 12 O -0.361 6.361 13 C 0.089 3.911 14 H 0.083 0.917 15 C -0.162 4.162 16 S 0.232 5.768 17 C -0.239 4.239 18 S 0.054 5.946 19 C -0.545 4.545 20 H 0.105 0.895 21 C 0.102 3.898 22 N -0.857 5.857 23 Si 0.852 3.148 24 H -0.261 1.261 25 H -0.265 1.265 26 H -0.236 1.236 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.413 0.587 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.512 19.362 0.238 19.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.112 4.112 3 N -0.203 5.203 4 C -0.178 4.178 5 N -0.266 5.266 6 C 0.302 3.698 7 O -0.364 6.364 8 C -0.156 4.156 9 H 0.126 0.874 10 C -0.182 4.182 11 C -0.029 4.029 12 O -0.280 6.280 13 C 0.031 3.969 14 H 0.101 0.899 15 C -0.220 4.220 16 S 0.478 5.522 17 C -0.475 4.475 18 S 0.302 5.698 19 C -0.694 4.694 20 H 0.122 0.878 21 C -0.109 4.109 22 N -0.490 5.490 23 Si 0.676 3.324 24 H -0.185 1.185 25 H -0.190 1.190 26 H -0.160 1.160 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.251 0.749 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.620 17.621 0.041 17.990 hybrid contribution -0.352 0.576 0.246 0.719 sum 3.268 18.198 0.288 18.491 Atomic orbital electron populations 1.20143 0.88012 1.02193 1.01904 1.19103 0.96775 0.84614 1.10659 1.65864 1.02876 1.32169 1.19380 1.23991 0.90014 0.93483 1.10327 1.42543 1.04400 1.07970 1.71667 1.20472 0.81615 0.91323 0.76381 1.90737 1.76754 1.22186 1.46717 1.22735 0.96203 0.97267 0.99403 0.87387 1.23003 0.91888 1.04732 0.98545 1.23400 0.95120 1.01644 0.82702 1.89226 1.31773 1.72600 1.34415 1.22873 0.85878 0.96274 0.91864 0.89876 1.22005 0.97235 1.03518 0.99195 1.86221 1.00532 0.94375 1.71109 1.28172 1.01746 1.04491 1.13135 1.82454 1.13481 0.89178 1.84732 1.22664 0.92395 0.94503 1.59803 0.87760 1.24742 0.97367 0.96222 0.92610 1.70012 1.26464 1.07675 1.44867 0.86815 0.83876 0.81369 0.80383 1.18544 1.18976 1.16002 0.91714 0.91103 0.91739 0.74910 0.89635 0.88519 0.88540 0.92102 0.90879 0.91018 0.90828 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.04 10.02 36.00 0.36 -0.68 16 2 C 0.03 0.62 6.73 -83.97 -0.57 0.05 16 3 N -0.48 -9.25 10.55 -9.79 -0.10 -9.35 16 4 C 0.19 3.57 8.40 -87.19 -0.73 2.84 16 5 N -0.62 -8.51 4.95 -11.78 -0.06 -8.57 16 6 C 0.52 7.19 4.80 -10.99 -0.05 7.14 16 7 O -0.49 -9.06 13.29 5.55 0.07 -8.99 16 8 C -0.13 -1.25 3.42 -90.20 -0.31 -1.56 16 9 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 10 C -0.14 -1.30 6.59 -25.16 -0.17 -1.47 16 11 C 0.05 0.44 7.63 37.94 0.29 0.72 16 12 O -0.36 -4.44 11.34 -35.23 -0.40 -4.84 16 13 C 0.09 0.86 3.83 -25.96 -0.10 0.76 16 14 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 15 C -0.16 -1.73 8.53 37.16 0.32 -1.41 16 16 S 0.23 5.15 18.35 -107.50 -1.97 3.18 16 17 C -0.24 -5.41 6.67 29.46 0.20 -5.21 16 18 S 0.05 1.30 18.70 -107.50 -2.01 -0.71 16 19 C -0.55 -15.25 9.80 30.80 0.30 -14.95 16 20 H 0.10 3.13 6.21 -52.49 -0.33 2.81 16 21 C 0.10 2.83 5.49 -17.49 -0.10 2.74 16 22 N -0.86 -24.85 13.98 55.47 0.78 -24.07 16 23 Si 0.85 19.72 27.73 -169.99 -4.71 15.00 16 24 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.24 -5.21 6.73 56.52 0.38 -4.83 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.15 7.37 -51.93 -0.38 0.77 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.41 4.16 8.82 -40.82 -0.36 3.80 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 1.13 6.97 -51.93 -0.36 0.77 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.67 7.64 -51.93 -0.40 0.27 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.05 7.30 -51.93 -0.38 0.67 16 38 H 0.28 7.36 8.32 -40.82 -0.34 7.02 16 LS Contribution 339.54 15.07 5.12 5.12 Total: -1.00 -33.31 339.54 -8.59 -41.90 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.74 Total: 2.38 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -0.55 Total: -11.04 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.61 Total: -42.00 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.33 Total: -13.83 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.71 Total: 15.00 kcal Atomic # 16 Polarization: 6.45 SS G_CDS: -3.98 Total: 2.46 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.31 -8.59 -41.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092334539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.786 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds