Wall clock time and date at job start Tue Mar 31 2020 14:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31591 * 122.23114 * 2 1 4 4 C 1.29941 * 117.13909 * 180.02562 * 3 2 1 5 5 N 1.38897 * 125.36650 * 179.97438 * 4 3 2 6 6 C 1.34775 * 120.00235 * 179.97438 * 5 4 3 7 7 O 1.21289 * 119.99622 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99842 * 179.72667 * 6 5 4 9 9 H 1.08999 * 110.45693 * 26.02018 * 8 6 5 10 10 C 1.54516 * 110.50749 * 148.76873 * 8 6 5 11 11 C 1.54482 * 104.06318 * 118.64647 * 10 8 6 12 12 O 1.44421 * 104.80167 * 336.02012 * 11 10 8 13 13 C 1.44429 * 105.27592 * 40.51134 * 12 11 10 14 14 H 1.09001 * 110.46252 * 78.37190 * 13 12 11 15 15 C 1.53002 * 110.36982 * 200.65340 * 13 12 11 16 16 S 1.76143 * 109.26993 * 0.24347 * 4 3 2 17 17 C 1.34652 * 122.23134 * 180.02562 * 2 1 3 18 18 S 1.76203 * 125.93089 * 359.97438 * 17 2 1 19 19 C 1.76198 * 99.99956 * 179.97438 * 18 17 2 20 20 H 1.07992 * 120.00123 * 359.97438 * 19 18 17 21 21 C 1.38430 * 119.99689 * 179.97438 * 19 18 17 22 22 N 1.31815 * 120.00092 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00385 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47383 * 89.99461 * 23 21 19 25 25 H 1.48503 * 109.47047 * 210.00094 * 23 21 19 26 26 H 1.48502 * 109.46646 * 329.99718 * 23 21 19 27 27 H 1.08998 * 109.47313 * 89.97677 * 1 2 3 28 28 H 1.08999 * 109.47299 * 209.97783 * 1 2 3 29 29 H 1.09003 * 109.47396 * 329.98240 * 1 2 3 30 30 H 0.97004 * 119.99849 * 0.02562 * 5 4 3 31 31 H 1.09007 * 110.50740 * 237.28828 * 10 8 6 32 32 H 1.08998 * 110.51159 * 359.97438 * 10 8 6 33 33 H 1.09000 * 110.36841 * 217.18845 * 11 10 8 34 34 H 1.08998 * 110.37045 * 94.85408 * 11 10 8 35 35 H 1.08997 * 109.46810 * 169.19619 * 15 13 12 36 36 H 1.08995 * 109.47599 * 289.20148 * 15 13 12 37 37 H 1.09004 * 109.47048 * 49.20605 * 15 13 12 38 38 H 0.96996 * 120.00217 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5031 0.9978 -0.0005 5 7 4.4044 2.0546 -0.0011 6 6 5.7297 1.8100 -0.0011 7 8 6.1354 0.6670 -0.0010 8 6 6.7075 2.9567 -0.0080 9 1 6.2568 3.8444 0.4359 10 6 8.0011 2.5696 0.7432 11 6 9.1059 2.6782 -0.3311 12 8 8.4153 2.5122 -1.5886 13 6 7.1838 3.2534 -1.4472 14 1 7.3646 4.3207 -1.5747 15 6 6.1485 2.7647 -2.4622 16 16 3.9345 -0.7100 -0.0082 17 6 2.2251 -1.1390 -0.0005 18 16 1.5697 -2.7746 -0.0006 19 6 3.0665 -3.7041 -0.0021 20 1 4.0186 -3.1944 -0.0031 21 6 3.0221 -5.0877 -0.0021 22 7 4.1419 -5.7831 -0.0037 23 14 1.3752 -5.9693 -0.0011 24 1 0.9379 -6.2029 -1.4008 25 1 1.5115 -7.2719 0.6989 26 1 0.3671 -5.1339 0.6996 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3634 0.8898 0.5141 30 1 4.0799 2.9688 -0.0008 31 1 8.1920 3.2666 1.5592 32 1 7.9331 1.5490 1.1199 33 1 9.8447 1.8882 -0.1967 34 1 9.5833 3.6570 -0.2867 35 1 5.1746 3.1912 -2.2218 36 1 6.4451 3.0777 -3.4632 37 1 6.0880 1.6770 -2.4246 38 1 4.1107 -6.7525 -0.0033 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092334539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:41 Heat of formation + Delta-G solvation = -67.940455 kcal Electronic energy + Delta-G solvation = -23213.454669 eV Core-core repulsion = 19693.778890 eV Total energy + Delta-G solvation = -3519.675779 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.06814 -40.47005 -39.50449 -36.21699 -34.83685 -33.73374 -32.53807 -31.96405 -28.82647 -27.93415 -27.72888 -25.53260 -23.28708 -23.05805 -22.20137 -20.87556 -19.63752 -19.28795 -18.36836 -17.62373 -17.40994 -17.24130 -16.69370 -16.53228 -16.48097 -15.87009 -15.54402 -15.14854 -15.00056 -14.50671 -14.08242 -13.58150 -13.55540 -13.46234 -13.38544 -13.31544 -13.19250 -13.09815 -12.99955 -12.51811 -12.26256 -12.12721 -12.03213 -11.96670 -11.93294 -11.39029 -11.28596 -10.92297 -10.69929 -10.60434 -10.56149 -9.63606 -8.62901 -8.54606 -6.36277 -0.30092 0.14643 0.75250 1.04822 1.14143 1.27975 1.38278 1.49415 1.64403 1.95537 2.12944 2.49334 2.75827 2.86818 3.22184 3.46798 3.63327 3.79519 4.06270 4.16790 4.26390 4.29004 4.36155 4.42492 4.56392 4.65558 4.82968 4.84312 4.87193 4.88496 4.92954 5.02388 5.08847 5.14822 5.43529 5.59321 5.84538 5.95101 6.06323 6.74297 6.75286 6.82372 8.49919 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.017235 B = 0.003666 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.238391 B = 7635.223985 C = 8805.447889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.053 3.947 3 N -0.483 5.483 4 C 0.236 3.764 5 N -0.601 5.601 6 C 0.514 3.486 7 O -0.538 6.538 8 C -0.125 4.125 9 H 0.162 0.838 10 C -0.144 4.144 11 C 0.044 3.956 12 O -0.401 6.401 13 C 0.088 3.912 14 H 0.130 0.870 15 C -0.164 4.164 16 S 0.155 5.845 17 C -0.278 4.278 18 S 0.061 5.939 19 C -0.569 4.569 20 H 0.066 0.934 21 C 0.048 3.952 22 N -0.908 5.908 23 Si 0.915 3.085 24 H -0.252 1.252 25 H -0.253 1.253 26 H -0.218 1.218 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.438 0.562 31 H 0.125 0.875 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.025 0.975 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.948 23.502 0.623 23.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.088 4.088 3 N -0.205 5.205 4 C -0.137 4.137 5 N -0.253 5.253 6 C 0.302 3.698 7 O -0.413 6.413 8 C -0.147 4.147 9 H 0.180 0.820 10 C -0.182 4.182 11 C -0.032 4.032 12 O -0.321 6.321 13 C 0.031 3.969 14 H 0.147 0.853 15 C -0.221 4.221 16 S 0.401 5.599 17 C -0.512 4.512 18 S 0.306 5.694 19 C -0.717 4.717 20 H 0.084 0.916 21 C -0.159 4.159 22 N -0.544 5.544 23 Si 0.734 3.266 24 H -0.176 1.176 25 H -0.177 1.177 26 H -0.142 1.142 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.280 0.720 31 H 0.143 0.857 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.045 0.955 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.069 21.841 0.431 21.943 hybrid contribution 0.324 -0.344 0.096 0.482 sum 2.393 21.497 0.528 21.636 Atomic orbital electron populations 1.20320 0.85025 1.03566 1.03498 1.19860 0.98698 0.83929 1.06357 1.66102 1.02422 1.31075 1.20897 1.24261 0.90374 0.93123 1.05896 1.42721 1.03870 1.07886 1.70854 1.21636 0.81819 0.92116 0.74201 1.90748 1.77354 1.24912 1.48250 1.22964 0.94896 0.96672 1.00132 0.82015 1.23050 0.91821 1.03666 0.99650 1.23595 0.94885 1.03273 0.81479 1.89197 1.33077 1.73756 1.36067 1.23155 0.84578 0.98168 0.91009 0.85286 1.22038 0.98971 1.00424 1.00689 1.86649 1.02276 0.98262 1.72683 1.28100 1.01462 1.04548 1.17116 1.81848 1.10709 0.89458 1.87401 1.22851 0.93272 0.95499 1.60050 0.91629 1.25748 1.01439 0.96833 0.91843 1.70124 1.29158 1.08259 1.46872 0.85881 0.79151 0.80489 0.81066 1.17647 1.17720 1.14158 0.89846 0.90886 0.89177 0.71991 0.85719 0.92219 0.89570 0.88493 0.89105 0.90099 0.95548 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.95 10.02 71.23 0.71 -1.24 16 2 C 0.05 2.06 6.73 41.77 0.28 2.34 16 3 N -0.48 -17.57 10.55 -184.87 -1.95 -19.52 16 4 C 0.24 8.56 8.40 179.15 1.50 10.07 16 5 N -0.60 -15.27 4.95 -309.57 -1.53 -16.80 16 6 C 0.51 13.73 4.80 87.66 0.42 14.15 16 7 O -0.54 -20.70 13.29 -3.06 -0.04 -20.75 16 8 C -0.13 -1.90 3.42 -10.52 -0.04 -1.94 16 9 H 0.16 0.77 8.14 -2.39 -0.02 0.75 16 10 C -0.14 -2.26 6.59 31.61 0.21 -2.05 16 11 C 0.04 0.70 7.63 72.49 0.55 1.26 16 12 O -0.40 -9.36 11.34 -148.98 -1.69 -11.05 16 13 C 0.09 1.41 3.83 31.10 0.12 1.53 16 14 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 15 C -0.16 -3.24 8.53 71.98 0.61 -2.63 16 16 S 0.16 7.25 18.35 -56.49 -1.04 6.22 16 17 C -0.28 -12.78 6.67 67.00 0.45 -12.33 16 18 S 0.06 2.97 18.70 -56.49 -1.06 1.91 16 19 C -0.57 -33.64 9.80 67.87 0.67 -32.98 16 20 H 0.07 4.29 6.21 -2.91 -0.02 4.27 16 21 C 0.05 2.78 5.49 84.74 0.47 3.25 16 22 N -0.91 -55.61 13.98 21.59 0.30 -55.31 16 23 Si 0.92 41.36 27.73 68.60 1.90 43.26 16 24 H -0.25 -10.97 7.11 99.48 0.71 -10.27 16 25 H -0.25 -10.82 7.11 99.48 0.71 -10.12 16 26 H -0.22 -9.16 6.73 99.48 0.67 -8.49 16 27 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.07 2.20 7.37 -2.39 -0.02 2.19 16 29 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.44 6.97 8.82 -92.70 -0.82 6.15 16 31 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.06 1.41 6.97 -2.39 -0.02 1.39 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.09 1.39 7.64 -2.39 -0.02 1.38 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.03 0.76 7.30 -2.38 -0.02 0.74 16 38 H 0.28 15.73 8.32 -92.71 -0.77 14.96 16 Total: -1.00 -80.59 339.54 1.11 -79.48 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.25 Total: 13.12 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 5.96 Total: -20.57 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -3.18 Total: -91.63 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -1.73 Total: -31.79 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 1.90 Total: 43.26 kcal Atomic # 16 Polarization: 10.22 SS G_CDS: -2.09 Total: 8.13 kcal Total: -80.59 1.11 -79.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092334539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.539 kcal (2) G-P(sol) polarization free energy of solvation -80.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds