Wall clock time and date at job start Tue Mar 31 2020 15:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39752 * 120.07921 * 236.51844 * 3 2 1 5 5 C 1.37726 * 119.91041 * 179.70326 * 4 3 2 6 6 C 1.39054 * 120.08749 * 0.27759 * 5 4 3 7 7 N 1.39844 * 119.91818 * 179.97438 * 6 5 4 8 8 N 1.40080 * 126.11823 * 325.03498 * 7 6 5 9 9 C 1.30863 * 108.41968 * 179.97438 * 8 7 6 10 10 C 1.39797 * 108.49684 * 359.97438 * 9 8 7 11 11 C 1.36100 * 107.88202 * 359.73952 * 10 9 8 12 12 N 1.39414 * 126.28435 * 180.30029 * 11 10 9 13 13 C 1.34776 * 119.99776 * 0.14249 * 12 11 10 14 14 O 1.21292 * 119.99988 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99684 * 179.97438 * 13 12 11 16 16 S 1.80998 * 109.47021 * 179.97438 * 15 13 12 17 17 C 1.76201 * 100.00181 * 180.02562 * 16 15 13 18 18 H 1.07996 * 119.99765 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00114 * 180.02562 * 17 16 15 20 20 N 1.31626 * 119.99792 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99906 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47126 * 60.00532 * 21 19 17 23 23 H 1.48505 * 109.46911 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47446 * 299.99948 * 21 19 17 25 25 C 1.39051 * 120.16497 * 0.02897 * 6 5 4 26 26 C 1.37722 * 120.08504 * 359.97206 * 25 6 5 27 27 H 1.08002 * 120.04795 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.95650 * 180.30823 * 5 4 3 29 29 H 1.07999 * 125.74841 * 180.02562 * 9 8 7 30 30 H 1.07999 * 126.05674 * 180.02562 * 10 9 8 31 31 H 0.96996 * 119.99801 * 180.14588 * 12 11 10 32 32 H 1.08998 * 109.47637 * 300.00135 * 15 13 12 33 33 H 1.09005 * 109.46703 * 60.00540 * 15 13 12 34 34 H 0.97004 * 119.99791 * 179.97438 * 20 19 17 35 35 H 1.07997 * 119.95712 * 179.97438 * 25 6 5 36 36 H 1.08000 * 120.04461 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 0.6681 1.0086 5 6 4.6454 0.6613 1.0087 6 6 5.3393 -0.0036 0.0037 7 7 6.7377 -0.0077 0.0069 8 7 7.5656 1.0414 0.4266 9 6 8.8115 0.6678 0.2830 10 6 8.8283 -0.6317 -0.2322 11 6 7.5382 -1.0351 -0.3906 12 7 7.1140 -2.2720 -0.8741 13 6 8.0208 -3.2019 -1.2338 14 8 9.2059 -2.9628 -1.1364 15 6 7.5623 -4.5391 -1.7559 16 16 9.0043 -5.5596 -2.1502 17 6 8.1993 -7.0191 -2.7216 18 1 7.1206 -7.0674 -2.7438 19 6 8.9515 -8.1067 -3.1433 20 7 10.2662 -8.0479 -3.1159 21 14 8.0981 -9.6537 -3.7498 22 1 7.2532 -9.3243 -4.9258 23 1 9.1174 -10.6608 -4.1398 24 1 7.2453 -10.2057 -2.6666 25 6 4.6461 -0.6634 -1.0051 26 6 3.2689 -0.6611 -1.0119 27 1 2.7300 1.1849 1.7895 28 1 5.1872 1.1727 1.7906 29 1 9.6803 1.2627 0.5230 30 1 9.7090 -1.2141 -0.4594 31 1 6.1662 -2.4633 -0.9517 32 1 6.9599 -5.0385 -0.9971 33 1 6.9646 -4.3923 -2.6556 34 1 10.7919 -8.8082 -3.4103 35 1 5.1884 -1.1784 -1.7842 36 1 2.7312 -1.1741 -1.7955 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112831122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:24 Heat of formation + Delta-G solvation = 117.118676 kcal Electronic energy + Delta-G solvation = -23220.717136 eV Core-core repulsion = 19605.914923 eV Total energy + Delta-G solvation = -3614.802213 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.01224 -39.87828 -39.33665 -36.92246 -35.06254 -33.76693 -32.53740 -31.83154 -30.56131 -29.78620 -28.27091 -25.60119 -24.66469 -23.83001 -22.09875 -21.39564 -20.13033 -19.58883 -19.02465 -17.78748 -16.64262 -16.38960 -16.07117 -15.57490 -15.23162 -14.89809 -14.85990 -14.57745 -14.40582 -14.26339 -14.16364 -13.81584 -13.69025 -13.33235 -13.11945 -12.86310 -12.72806 -12.61970 -12.45795 -11.81029 -11.17701 -11.12167 -11.07789 -10.96980 -10.86435 -10.35763 -9.96016 -9.79375 -9.71057 -9.16100 -8.69126 -8.42555 -8.26985 -6.65175 -6.32405 -4.05213 -0.04153 0.64050 1.51477 1.75150 2.21496 2.39616 2.56770 2.71230 2.95860 3.16978 3.17239 3.22886 3.28264 3.36759 3.39111 4.07848 4.08657 4.17452 4.48492 4.49598 4.62990 4.81362 4.90768 5.03411 5.18127 5.26356 5.31971 5.40297 5.48413 5.60817 5.62727 5.67548 5.80612 5.88611 5.97737 6.04286 6.59610 6.78944 7.02584 7.09797 7.48181 7.49206 8.07823 8.24007 9.13145 10.74865 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012455 B = 0.002828 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.637297 B = 9897.881952 C =12033.834288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.255 3.745 3 C -0.041 4.041 4 C -0.043 4.043 5 C -0.116 4.116 6 C 0.199 3.801 7 N -0.355 5.355 8 N -0.291 5.291 9 C 0.080 3.920 10 C -0.271 4.271 11 C 0.321 3.679 12 N -0.657 5.657 13 C 0.538 3.462 14 O -0.475 6.475 15 C -0.152 4.152 16 S -0.050 6.050 17 C -0.540 4.540 18 H 0.074 0.926 19 C 0.075 3.925 20 N -0.866 5.866 21 Si 0.920 3.080 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.273 1.273 25 C -0.154 4.154 26 C -0.037 4.037 27 H 0.143 0.857 28 H 0.147 0.853 29 H 0.194 0.806 30 H 0.183 0.817 31 H 0.410 0.590 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.271 0.729 35 H 0.140 0.860 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.752 17.321 6.849 21.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.060 4.060 3 C -0.045 4.045 4 C -0.065 4.065 5 C -0.136 4.136 6 C 0.105 3.895 7 N -0.137 5.137 8 N -0.110 5.110 9 C -0.108 4.108 10 C -0.302 4.302 11 C 0.105 3.895 12 N -0.308 5.308 13 C 0.325 3.675 14 O -0.345 6.345 15 C -0.303 4.303 16 S 0.177 5.823 17 C -0.688 4.688 18 H 0.092 0.908 19 C -0.134 4.134 20 N -0.501 5.501 21 Si 0.746 3.254 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.175 4.175 26 C -0.058 4.058 27 H 0.161 0.839 28 H 0.165 0.835 29 H 0.211 0.789 30 H 0.200 0.800 31 H 0.248 0.752 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.158 0.842 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.150 18.442 7.296 22.752 hybrid contribution -1.410 -1.989 -0.816 2.571 sum -12.561 16.453 6.480 21.690 Atomic orbital electron populations 1.81296 1.11980 1.08144 1.07429 1.25569 0.92475 0.93934 0.94031 1.16025 0.84603 1.04696 0.99186 1.21101 0.93199 0.95572 0.96581 1.20931 0.93494 1.01018 0.98136 1.17710 0.79299 0.97847 0.94663 1.45973 1.03178 1.11060 1.53525 1.77582 1.01668 1.07418 1.24358 1.24018 0.95079 0.95396 0.96269 1.21872 0.96041 0.97832 1.14440 1.18338 0.90548 0.82844 0.97798 1.43523 1.11617 1.11233 1.64436 1.20605 0.85671 0.84782 0.76446 1.90661 1.16265 1.78039 1.49505 1.23549 1.08072 0.94639 1.04004 1.85457 1.02707 1.10487 1.83677 1.22799 0.95075 1.00286 1.50636 0.90771 1.24991 0.94887 0.98597 0.94967 1.69990 1.04448 1.31535 1.44118 0.86205 0.79001 0.81005 0.79197 1.19870 1.20752 1.19867 1.20978 0.94380 1.03870 0.98275 1.21013 0.92779 0.95463 0.96568 0.83885 0.83533 0.78932 0.79976 0.75213 0.88408 0.88424 0.91959 0.84205 0.83615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.48 18.54 41.84 0.78 -3.71 16 2 C 0.26 2.10 15.33 -22.47 -0.34 1.75 16 3 C -0.04 -0.26 5.74 -106.84 -0.61 -0.87 16 4 C -0.04 -0.24 9.75 -39.20 -0.38 -0.63 16 5 C -0.12 -0.84 9.74 -39.47 -0.38 -1.22 16 6 C 0.20 1.79 6.39 -83.60 -0.53 1.25 16 7 N -0.36 -4.10 3.75 -9.70 -0.04 -4.13 16 8 N -0.29 -3.49 12.32 30.61 0.38 -3.11 16 9 C 0.08 0.89 12.00 -17.38 -0.21 0.68 16 10 C -0.27 -3.67 9.65 -39.77 -0.38 -4.05 16 11 C 0.32 4.17 7.40 -152.40 -1.13 3.04 16 12 N -0.66 -8.07 5.01 -11.27 -0.06 -8.13 16 13 C 0.54 8.70 7.81 -10.99 -0.09 8.61 16 14 O -0.48 -9.23 13.00 5.55 0.07 -9.16 16 15 C -0.15 -2.65 6.16 36.01 0.22 -2.43 16 16 S -0.05 -1.23 20.57 -107.50 -2.21 -3.44 16 17 C -0.54 -14.37 9.50 30.94 0.29 -14.08 16 18 H 0.07 1.85 7.80 -52.49 -0.41 1.44 16 19 C 0.08 2.04 5.49 -17.43 -0.10 1.95 16 20 N -0.87 -24.92 13.22 55.49 0.73 -24.18 16 21 Si 0.92 20.41 29.55 -169.99 -5.02 15.38 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 25 C -0.15 -1.10 8.41 -39.47 -0.33 -1.43 16 26 C -0.04 -0.21 9.75 -39.20 -0.38 -0.59 16 27 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 28 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.19 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.18 2.78 5.83 -52.49 -0.31 2.47 16 31 H 0.41 3.73 6.12 -40.82 -0.25 3.48 16 32 H 0.10 1.54 8.14 -51.92 -0.42 1.12 16 33 H 0.10 1.51 8.14 -51.91 -0.42 1.09 16 34 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.14 0.93 6.32 -52.49 -0.33 0.60 16 36 H 0.15 0.56 8.06 -52.49 -0.42 0.13 16 LS Contribution 343.28 15.07 5.17 5.17 Total: -1.00 -33.71 343.28 -7.52 -41.23 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -2.97 Total: 2.09 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -4.36 Total: -8.02 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 1.79 Total: -43.26 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.07 Total: -9.16 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: -1.23 SS G_CDS: -2.21 Total: -3.44 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.71 -7.52 -41.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112831122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.353 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds