Wall clock time and date at job start Tue Mar 31 2020 15:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39752 * 120.07921 * 236.51844 * 3 2 1 5 5 C 1.37726 * 119.91041 * 179.70326 * 4 3 2 6 6 C 1.39054 * 120.08749 * 0.27759 * 5 4 3 7 7 N 1.39844 * 119.91818 * 179.97438 * 6 5 4 8 8 N 1.40080 * 126.11823 * 325.03498 * 7 6 5 9 9 C 1.30863 * 108.41968 * 179.97438 * 8 7 6 10 10 C 1.39797 * 108.49684 * 359.97438 * 9 8 7 11 11 C 1.36100 * 107.88202 * 359.73952 * 10 9 8 12 12 N 1.39414 * 126.28435 * 180.30029 * 11 10 9 13 13 C 1.34776 * 119.99776 * 0.14249 * 12 11 10 14 14 O 1.21292 * 119.99988 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99684 * 179.97438 * 13 12 11 16 16 S 1.80998 * 109.47021 * 179.97438 * 15 13 12 17 17 C 1.76201 * 100.00181 * 180.02562 * 16 15 13 18 18 H 1.07996 * 119.99765 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00114 * 180.02562 * 17 16 15 20 20 N 1.31626 * 119.99792 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99906 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47126 * 60.00532 * 21 19 17 23 23 H 1.48505 * 109.46911 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47446 * 299.99948 * 21 19 17 25 25 C 1.39051 * 120.16497 * 0.02897 * 6 5 4 26 26 C 1.37722 * 120.08504 * 359.97206 * 25 6 5 27 27 H 1.08002 * 120.04795 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.95650 * 180.30823 * 5 4 3 29 29 H 1.07999 * 125.74841 * 180.02562 * 9 8 7 30 30 H 1.07999 * 126.05674 * 180.02562 * 10 9 8 31 31 H 0.96996 * 119.99801 * 180.14588 * 12 11 10 32 32 H 1.08998 * 109.47637 * 300.00135 * 15 13 12 33 33 H 1.09005 * 109.46703 * 60.00540 * 15 13 12 34 34 H 0.97004 * 119.99791 * 179.97438 * 20 19 17 35 35 H 1.07997 * 119.95712 * 179.97438 * 25 6 5 36 36 H 1.08000 * 120.04461 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 0.6681 1.0086 5 6 4.6454 0.6613 1.0087 6 6 5.3393 -0.0036 0.0037 7 7 6.7377 -0.0077 0.0069 8 7 7.5656 1.0414 0.4266 9 6 8.8115 0.6678 0.2830 10 6 8.8283 -0.6317 -0.2322 11 6 7.5382 -1.0351 -0.3906 12 7 7.1140 -2.2720 -0.8741 13 6 8.0208 -3.2019 -1.2338 14 8 9.2059 -2.9628 -1.1364 15 6 7.5623 -4.5391 -1.7559 16 16 9.0043 -5.5596 -2.1502 17 6 8.1993 -7.0191 -2.7216 18 1 7.1206 -7.0674 -2.7438 19 6 8.9515 -8.1067 -3.1433 20 7 10.2662 -8.0479 -3.1159 21 14 8.0981 -9.6537 -3.7498 22 1 7.2532 -9.3243 -4.9258 23 1 9.1174 -10.6608 -4.1398 24 1 7.2453 -10.2057 -2.6666 25 6 4.6461 -0.6634 -1.0051 26 6 3.2689 -0.6611 -1.0119 27 1 2.7300 1.1849 1.7895 28 1 5.1872 1.1727 1.7906 29 1 9.6803 1.2627 0.5230 30 1 9.7090 -1.2141 -0.4594 31 1 6.1662 -2.4633 -0.9517 32 1 6.9599 -5.0385 -0.9971 33 1 6.9646 -4.3923 -2.6556 34 1 10.7919 -8.8082 -3.4103 35 1 5.1884 -1.1784 -1.7842 36 1 2.7312 -1.1741 -1.7955 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112831122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:23 Heat of formation + Delta-G solvation = 97.213649 kcal Electronic energy + Delta-G solvation = -23221.580283 eV Core-core repulsion = 19605.914923 eV Total energy + Delta-G solvation = -3615.665360 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.92338 -40.76774 -40.27939 -37.64206 -36.19219 -34.57035 -34.52434 -32.38139 -31.77027 -30.53757 -29.41187 -27.63038 -25.37311 -24.48688 -23.11133 -22.21836 -21.21840 -20.37139 -19.88782 -19.50982 -17.88128 -17.23427 -17.01153 -16.85055 -16.55688 -16.07440 -15.85239 -15.70349 -15.33824 -15.12675 -15.02955 -14.64398 -14.58797 -14.51011 -14.17070 -13.94260 -13.80414 -13.47340 -13.26993 -13.14633 -12.85223 -12.64527 -12.39031 -12.19910 -11.91734 -11.72717 -11.10882 -11.10292 -11.05802 -10.28271 -10.25710 -9.45864 -9.26491 -8.64465 -8.32861 -6.10286 -0.67192 0.14699 0.57375 0.77579 1.31896 1.43540 1.46343 1.49440 1.56625 1.57549 1.78856 1.89846 2.04843 2.27977 2.70643 2.75163 3.02295 3.22202 3.45463 3.63966 3.68275 3.84597 3.97047 4.18076 4.25871 4.33176 4.34340 4.47592 4.53468 4.72219 4.85037 4.88047 5.02421 5.10907 5.18583 5.44039 5.45360 5.65021 5.87114 6.13462 6.22106 6.39462 6.56024 6.88024 7.09564 8.75675 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012455 B = 0.002828 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.637297 B = 9897.881952 C =12033.834288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.282 3.718 3 C -0.040 4.040 4 C -0.029 4.029 5 C -0.116 4.116 6 C 0.170 3.830 7 N -0.350 5.350 8 N -0.299 5.299 9 C 0.084 3.916 10 C -0.293 4.293 11 C 0.309 3.691 12 N -0.635 5.635 13 C 0.544 3.456 14 O -0.514 6.514 15 C -0.128 4.128 16 S -0.137 6.137 17 C -0.546 4.546 18 H 0.087 0.913 19 C 0.015 3.985 20 N -0.910 5.910 21 Si 0.994 3.006 22 H -0.262 1.262 23 H -0.283 1.283 24 H -0.263 1.263 25 C -0.154 4.154 26 C -0.025 4.025 27 H 0.167 0.833 28 H 0.148 0.852 29 H 0.226 0.774 30 H 0.161 0.839 31 H 0.427 0.573 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.271 0.729 35 H 0.145 0.855 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.393 17.789 6.993 23.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.033 4.033 3 C -0.044 4.044 4 C -0.050 4.050 5 C -0.136 4.136 6 C 0.077 3.923 7 N -0.132 5.132 8 N -0.118 5.118 9 C -0.103 4.103 10 C -0.324 4.324 11 C 0.092 3.908 12 N -0.287 5.287 13 C 0.331 3.669 14 O -0.387 6.387 15 C -0.279 4.279 16 S 0.090 5.910 17 C -0.694 4.694 18 H 0.105 0.895 19 C -0.190 4.190 20 N -0.547 5.547 21 Si 0.816 3.184 22 H -0.186 1.186 23 H -0.208 1.208 24 H -0.187 1.187 25 C -0.174 4.174 26 C -0.046 4.046 27 H 0.185 0.815 28 H 0.166 0.834 29 H 0.242 0.758 30 H 0.179 0.821 31 H 0.268 0.732 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.080 0.920 35 H 0.162 0.838 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -13.862 18.945 7.454 24.630 hybrid contribution -0.677 -1.968 -0.797 2.228 sum -14.539 16.977 6.657 23.322 Atomic orbital electron populations 1.81336 1.13399 1.09814 1.09016 1.25677 0.92478 0.92519 0.92614 1.16073 0.83590 1.05026 0.99681 1.21291 0.92502 0.94604 0.96617 1.20981 0.94008 1.00794 0.97824 1.18102 0.78220 0.99695 0.96267 1.46058 1.04044 1.10205 1.52873 1.77538 1.01978 1.07829 1.24481 1.24456 0.95856 0.94646 0.95334 1.21835 0.95891 0.99020 1.15657 1.18303 0.90919 0.83176 0.98387 1.43036 1.11844 1.10458 1.63365 1.20299 0.85452 0.84909 0.76281 1.90675 1.17982 1.78701 1.51299 1.23350 1.04608 0.93981 1.05929 1.85624 1.08636 1.12532 1.84238 1.23180 0.95693 1.00566 1.49959 0.89483 1.26063 0.95502 1.02281 0.95129 1.70158 1.06274 1.32581 1.45656 0.85056 0.77838 0.76431 0.79026 1.18645 1.20793 1.18716 1.21033 0.94809 1.03657 0.97946 1.21210 0.92164 0.94577 0.96606 0.81532 0.83405 0.75807 0.82127 0.73230 0.86101 0.85797 0.92032 0.83763 0.81361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.23 18.54 19.00 0.35 -8.87 16 2 C 0.28 3.94 15.33 88.33 1.35 5.29 16 3 C -0.04 -0.38 5.74 -21.30 -0.12 -0.50 16 4 C -0.03 -0.24 9.75 22.51 0.22 -0.02 16 5 C -0.12 -1.40 9.74 22.34 0.22 -1.18 16 6 C 0.17 2.69 6.39 38.25 0.24 2.94 16 7 N -0.35 -7.58 3.75 -184.59 -0.69 -8.27 16 8 N -0.30 -6.79 12.32 -57.06 -0.70 -7.49 16 9 C 0.08 1.80 12.00 85.21 1.02 2.82 16 10 C -0.29 -7.99 9.65 22.15 0.21 -7.78 16 11 C 0.31 7.79 7.40 131.05 0.97 8.76 16 12 N -0.64 -14.74 5.01 -307.96 -1.54 -16.28 16 13 C 0.54 17.31 7.81 87.66 0.68 17.99 16 14 O -0.51 -20.55 13.00 -3.07 -0.04 -20.59 16 15 C -0.13 -4.28 6.16 71.24 0.44 -3.84 16 16 S -0.14 -6.94 20.57 -56.49 -1.16 -8.10 16 17 C -0.55 -28.96 9.50 67.95 0.65 -28.31 16 18 H 0.09 4.21 7.80 -2.91 -0.02 4.19 16 19 C 0.02 0.83 5.49 84.86 0.47 1.30 16 20 N -0.91 -53.53 13.22 21.65 0.29 -53.25 16 21 Si 0.99 41.44 29.55 68.60 2.03 43.46 16 22 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 23 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 25 C -0.15 -1.77 8.41 22.34 0.19 -1.58 16 26 C -0.02 -0.20 9.75 22.51 0.22 0.02 16 27 H 0.17 0.58 8.06 -2.91 -0.02 0.55 16 28 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 29 H 0.23 2.96 8.06 -2.91 -0.02 2.94 16 30 H 0.16 5.16 5.83 -2.91 -0.02 5.14 16 31 H 0.43 6.73 6.12 -92.71 -0.57 6.17 16 32 H 0.12 3.53 8.14 -2.40 -0.02 3.51 16 33 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 34 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 35 H 0.14 1.52 6.32 -2.91 -0.02 1.50 16 36 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 Total: -1.00 -75.62 343.28 5.88 -69.74 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.59 Total: 13.74 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 6.76 Total: -4.09 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -2.30 Total: -94.17 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.04 Total: -20.59 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Atomic # 16 Polarization: -6.94 SS G_CDS: -1.16 Total: -8.10 kcal Total: -75.62 5.88 -69.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112831122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.957 kcal (2) G-P(sol) polarization free energy of solvation -75.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds