Wall clock time and date at job start Tue Mar 31 2020 14:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31592 * 122.22881 * 2 1 4 4 C 1.29947 * 117.13752 * 180.27814 * 3 2 1 5 5 N 1.38893 * 125.36636 * 179.77303 * 4 3 2 6 6 C 1.34782 * 120.00075 * 179.71678 * 5 4 3 7 7 O 1.21281 * 119.99795 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99823 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.48342 * 54.99932 * 8 6 5 10 10 C 1.53095 * 109.48746 * 294.96824 * 8 6 5 11 11 C 1.53186 * 109.16108 * 182.40603 * 10 8 6 12 12 C 1.53176 * 109.03702 * 56.98084 * 11 10 8 13 13 C 1.53098 * 109.16241 * 303.01937 * 12 11 10 14 14 O 1.42900 * 109.41322 * 57.61138 * 13 12 11 15 15 S 1.76140 * 109.27092 * 359.50419 * 4 3 2 16 16 C 1.34660 * 122.23073 * 179.73769 * 2 1 3 17 17 S 1.76194 * 125.93086 * 359.97438 * 16 2 1 18 18 C 1.76205 * 99.99849 * 180.02562 * 17 16 2 19 19 H 1.08000 * 120.00041 * 359.97438 * 18 17 16 20 20 C 1.38424 * 119.99981 * 180.02562 * 18 17 16 21 21 N 1.31813 * 119.99987 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00235 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46715 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47153 * 119.99804 * 22 20 18 25 25 H 1.48504 * 109.46880 * 240.00251 * 22 20 18 26 26 H 1.08996 * 109.47034 * 270.26446 * 1 2 3 27 27 H 1.08997 * 109.47175 * 30.26834 * 1 2 3 28 28 H 1.09007 * 109.46887 * 150.27003 * 1 2 3 29 29 H 0.97002 * 120.00285 * 359.71996 * 5 4 3 30 30 H 1.08997 * 109.52552 * 302.30993 * 10 8 6 31 31 H 1.09002 * 109.52029 * 62.50093 * 10 8 6 32 32 H 1.08997 * 109.54303 * 297.11242 * 11 10 8 33 33 H 1.09000 * 109.61386 * 176.89469 * 11 10 8 34 34 H 1.08997 * 109.52465 * 183.11239 * 12 11 10 35 35 H 1.08996 * 109.52208 * 62.92558 * 12 11 10 36 36 H 1.08997 * 109.47875 * 297.62336 * 13 12 11 37 37 H 1.08994 * 109.47542 * 177.59064 * 13 12 11 38 38 H 0.96999 * 120.00183 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9979 -0.0056 5 7 4.4043 2.0547 -0.0111 6 6 5.7298 1.8101 -0.0109 7 8 6.1354 0.6672 -0.0055 8 6 6.7076 2.9568 -0.0162 9 1 6.4955 3.6193 0.8230 10 6 6.5746 3.7353 -1.3277 11 6 7.6122 4.8619 -1.3511 12 6 9.0088 4.2586 -1.1722 13 6 9.0477 3.4599 0.1333 14 8 8.0381 2.4490 0.1019 15 16 3.9346 -0.7098 0.0026 16 6 2.2252 -1.1391 0.0052 17 16 1.5697 -2.7746 0.0133 18 6 3.0667 -3.7040 0.0180 19 1 4.0188 -3.1943 0.0151 20 6 3.0223 -5.0876 0.0244 21 7 1.8602 -5.7097 0.0274 22 14 4.6093 -6.0730 0.0286 23 1 5.7684 -5.1446 0.0248 24 1 4.6607 -6.9232 1.2450 25 1 4.6603 -6.9344 -1.1800 26 1 -0.3633 0.0047 1.0276 27 1 -0.3633 0.8875 -0.5180 28 1 -0.3633 -0.8925 -0.5097 29 1 4.0799 2.9688 -0.0150 30 1 6.7468 3.0639 -2.1689 31 1 5.5734 4.1606 -1.3989 32 1 7.4102 5.5606 -0.5394 33 1 7.5611 5.3867 -2.3051 34 1 9.7486 5.0581 -1.1323 35 1 9.2302 3.5978 -2.0103 36 1 8.8663 4.1290 0.9743 37 1 10.0263 2.9929 0.2446 38 1 1.8291 -6.6792 0.0315 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120732575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:05 Heat of formation + Delta-G solvation = -73.501905 kcal Electronic energy + Delta-G solvation = -22798.238323 eV Core-core repulsion = 19278.321382 eV Total energy + Delta-G solvation = -3519.916941 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.79499 -40.38517 -39.57029 -36.26125 -34.82731 -34.62863 -32.89120 -31.69845 -28.80398 -27.73884 -27.27530 -25.04438 -24.56762 -22.55126 -21.49479 -21.15533 -19.92310 -19.22408 -18.35139 -17.68632 -17.10303 -17.08892 -16.83227 -16.76135 -16.06714 -15.72064 -15.50490 -15.32252 -14.95628 -14.77121 -14.40112 -13.94150 -13.65893 -13.49911 -13.41562 -13.27950 -13.08060 -12.90967 -12.68492 -12.34161 -12.15681 -12.13582 -12.04613 -11.93073 -11.44625 -11.36093 -11.14123 -10.78771 -10.55344 -10.49222 -10.47566 -9.55184 -8.58928 -8.38030 -6.30942 -0.25876 0.19816 0.81424 1.11757 1.25130 1.29178 1.31627 1.41705 1.59649 1.98856 2.13349 2.80210 2.85211 3.08284 3.30056 3.65392 3.73500 3.86794 3.98089 4.01714 4.15903 4.43134 4.46059 4.63029 4.66897 4.77685 4.84176 4.85979 4.96455 5.00878 5.03320 5.09134 5.17287 5.29290 5.36933 5.46537 5.82399 6.01595 6.15337 6.72965 6.83772 6.86354 8.49112 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.003475 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.170909 B = 8055.145671 C = 9704.458836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.038 3.962 3 N -0.477 5.477 4 C 0.227 3.773 5 N -0.596 5.596 6 C 0.507 3.493 7 O -0.529 6.529 8 C 0.094 3.906 9 H 0.128 0.872 10 C -0.147 4.147 11 C -0.115 4.115 12 C -0.159 4.159 13 C 0.052 3.948 14 O -0.393 6.393 15 S 0.148 5.852 16 C -0.280 4.280 17 S 0.103 5.897 18 C -0.576 4.576 19 H 0.079 0.921 20 C 0.036 3.964 21 N -0.895 5.895 22 Si 0.984 3.016 23 H -0.271 1.271 24 H -0.262 1.262 25 H -0.262 1.262 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.438 0.562 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.977 24.009 -1.026 26.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 N -0.199 5.199 4 C -0.145 4.145 5 N -0.250 5.250 6 C 0.294 3.706 7 O -0.404 6.404 8 C 0.033 3.967 9 H 0.145 0.855 10 C -0.185 4.185 11 C -0.153 4.153 12 C -0.196 4.196 13 C -0.023 4.023 14 O -0.312 6.312 15 S 0.393 5.607 16 C -0.515 4.515 17 S 0.351 5.649 18 C -0.725 4.725 19 H 0.097 0.903 20 C -0.171 4.171 21 N -0.529 5.529 22 Si 0.806 3.194 23 H -0.196 1.196 24 H -0.187 1.187 25 H -0.187 1.187 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.280 0.720 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.836 22.245 -1.001 24.343 hybrid contribution 0.964 -0.030 -0.059 0.966 sum 10.799 22.215 -1.060 24.724 Atomic orbital electron populations 1.20251 0.85482 1.03215 1.03167 1.19727 0.98463 0.84083 1.08119 1.66028 1.02416 1.31268 1.20168 1.24031 0.90188 0.92770 1.07545 1.42333 1.03472 1.08116 1.71073 1.21518 0.82033 0.91773 0.75307 1.90729 1.77388 1.24679 1.47567 1.21838 0.82591 0.90337 1.01899 0.85524 1.22250 1.03030 0.98294 0.94955 1.21611 0.92725 0.96435 1.04498 1.22238 0.98889 1.00624 0.97883 1.22947 0.90835 0.90536 0.98009 1.88040 1.13933 1.34534 1.94696 1.86205 1.02523 0.98538 1.73424 1.28591 1.01440 1.06126 1.15350 1.82835 1.11060 0.86145 1.84899 1.23483 0.93902 0.94894 1.60193 0.90334 1.25859 1.01350 0.97397 0.92482 1.70091 1.26002 1.10730 1.46118 0.85106 0.77184 0.77982 0.79157 1.19578 1.18660 1.18658 0.90255 0.89318 0.91371 0.71978 0.92241 0.87640 0.89129 0.89542 0.88236 0.92393 0.90667 0.88003 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.07 10.02 71.24 0.71 -1.35 16 2 C 0.04 1.56 6.73 41.77 0.28 1.84 16 3 N -0.48 -18.17 10.55 -184.87 -1.95 -20.12 16 4 C 0.23 8.51 8.40 179.15 1.50 10.01 16 5 N -0.60 -15.91 5.36 -309.57 -1.66 -17.57 16 6 C 0.51 14.47 7.14 87.66 0.63 15.10 16 7 O -0.53 -21.18 14.03 15.95 0.22 -20.96 16 8 C 0.09 1.72 3.05 29.88 0.09 1.81 16 9 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 10 C -0.15 -1.88 5.37 30.69 0.16 -1.72 16 11 C -0.12 -0.90 6.03 30.72 0.19 -0.71 16 12 C -0.16 -1.56 6.14 30.69 0.19 -1.37 16 13 C 0.05 0.70 6.84 72.01 0.49 1.19 16 14 O -0.39 -9.15 9.94 -130.00 -1.29 -10.45 16 15 S 0.15 6.88 18.35 -56.49 -1.04 5.84 16 16 C -0.28 -13.35 6.67 67.00 0.45 -12.90 16 17 S 0.10 5.45 20.74 -56.49 -1.17 4.28 16 18 C -0.58 -33.29 9.26 67.86 0.63 -32.66 16 19 H 0.08 4.58 5.97 -2.91 -0.02 4.56 16 20 C 0.04 2.03 5.49 84.74 0.46 2.50 16 21 N -0.89 -51.26 13.22 21.59 0.29 -50.97 16 22 Si 0.98 44.21 29.55 68.60 2.03 46.24 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 24 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 25 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 26 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.07 2.36 7.38 -2.38 -0.02 2.34 16 29 H 0.44 7.52 8.67 -92.71 -0.80 6.71 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.11 0.85 7.99 -2.39 -0.02 0.83 16 32 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.28 14.83 8.32 -92.71 -0.77 14.06 16 Total: -1.00 -76.20 343.96 1.51 -74.69 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 0.30 Total: 7.29 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 5.79 Total: -18.28 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -3.33 Total: -88.66 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -1.07 Total: -31.40 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 12.33 SS G_CDS: -2.21 Total: 10.12 kcal Total: -76.20 1.51 -74.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120732575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.185 kcal (2) G-P(sol) polarization free energy of solvation -76.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds