Wall clock time and date at job start Tue Mar 31 2020 14:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31591 * 122.23739 * 2 1 4 4 C 1.29941 * 117.14243 * 180.29415 * 3 2 1 5 5 N 1.38890 * 125.36521 * 179.73230 * 4 3 2 6 6 C 1.34781 * 119.99886 * 179.97438 * 5 4 3 7 7 O 1.21287 * 119.99777 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99938 * 180.02562 * 6 5 4 9 9 H 1.09007 * 109.47886 * 305.00276 * 8 6 5 10 10 C 1.53085 * 109.48172 * 65.02521 * 8 6 5 11 11 C 1.53180 * 109.16258 * 177.59587 * 10 8 6 12 12 C 1.53174 * 109.03186 * 303.01478 * 11 10 8 13 13 C 1.53093 * 109.16340 * 56.98392 * 12 11 10 14 14 O 1.42892 * 109.42642 * 302.39573 * 13 12 11 15 15 S 1.76144 * 109.26768 * 359.75198 * 4 3 2 16 16 C 1.34656 * 122.22814 * 179.82986 * 2 1 3 17 17 S 1.76206 * 125.93075 * 0.02562 * 16 2 1 18 18 C 1.76199 * 99.99945 * 179.71911 * 17 16 2 19 19 H 1.07998 * 120.00077 * 359.97438 * 18 17 16 20 20 C 1.38432 * 119.99815 * 179.97438 * 18 17 16 21 21 N 1.31810 * 120.00042 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99798 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99774 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99954 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99947 * 22 20 18 26 26 H 1.09004 * 109.47269 * 270.17776 * 1 2 3 27 27 H 1.08997 * 109.47104 * 30.17317 * 1 2 3 28 28 H 1.08999 * 109.47722 * 150.17668 * 1 2 3 29 29 H 0.96995 * 120.00007 * 0.02562 * 5 4 3 30 30 H 1.09005 * 109.52443 * 297.49831 * 10 8 6 31 31 H 1.09000 * 109.52557 * 57.68461 * 10 8 6 32 32 H 1.09000 * 109.54588 * 62.88544 * 11 10 8 33 33 H 1.09001 * 109.54289 * 183.15622 * 11 10 8 34 34 H 1.09004 * 109.52469 * 176.88733 * 12 11 10 35 35 H 1.09000 * 109.52968 * 297.01474 * 12 11 10 36 36 H 1.09000 * 109.47920 * 62.37185 * 13 12 11 37 37 H 1.09001 * 109.48341 * 182.40096 * 13 12 11 38 38 H 0.96996 * 119.99962 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2089 1.1131 0.0000 4 6 3.5031 0.9977 -0.0059 5 7 4.4044 2.0544 -0.0122 6 6 5.7298 1.8097 -0.0176 7 8 6.1354 0.6667 -0.0173 8 6 6.7077 2.9563 -0.0238 9 1 6.4914 3.6140 -0.8659 10 6 6.5810 3.7425 1.2836 11 6 7.6188 4.8692 1.2954 12 6 9.0144 4.2647 1.1135 13 6 9.0471 3.4583 -0.1875 14 8 8.0376 2.4478 -0.1457 15 16 3.9344 -0.7101 -0.0053 16 6 2.2250 -1.1391 0.0034 17 16 1.5695 -2.7747 0.0076 18 6 3.0663 -3.7042 0.0022 19 1 4.0185 -3.1946 -0.0027 20 6 3.0218 -5.0878 0.0042 21 7 1.8597 -5.7098 0.0096 22 14 4.6087 -6.0733 -0.0023 23 1 5.0224 -6.3363 -1.4041 24 1 4.3930 -7.3636 0.7005 25 1 5.6723 -5.3036 0.6916 26 1 -0.3634 0.0032 1.0277 27 1 -0.3633 0.8884 -0.5165 28 1 -0.3634 -0.8915 -0.5111 29 1 4.0800 2.9685 -0.0121 30 1 5.5803 4.1683 1.3572 31 1 6.7572 3.0761 2.1280 32 1 7.4129 5.5632 0.4805 33 1 7.5719 5.3982 2.2473 34 1 9.7541 5.0639 1.0652 35 1 9.2403 3.6096 1.9549 36 1 8.8617 4.1225 -1.0316 37 1 10.0251 2.9906 -0.3008 38 1 1.0357 -5.1981 0.0126 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120732739.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:08 Heat of formation + Delta-G solvation = -55.776472 kcal Electronic energy + Delta-G solvation = -22826.470778 eV Core-core repulsion = 19307.322469 eV Total energy + Delta-G solvation = -3519.148309 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.70648 -39.14619 -38.39408 -34.95115 -33.97886 -32.93115 -32.03032 -30.43968 -27.22062 -26.40685 -25.16937 -24.38571 -23.36469 -21.26879 -20.74364 -19.83024 -18.62262 -17.82137 -17.30242 -16.61826 -16.14586 -15.86575 -15.63314 -15.00660 -14.90418 -14.43236 -14.27162 -13.95886 -13.83165 -13.21055 -13.15939 -13.09292 -12.64320 -12.38502 -12.19264 -11.94658 -11.92122 -11.69076 -11.50381 -11.12002 -10.94460 -10.72293 -10.64970 -10.30036 -10.21656 -9.93906 -9.71159 -9.52736 -9.09862 -8.77438 -8.59301 -7.89346 -6.96235 -6.62637 -4.33682 1.28717 1.76661 2.35182 2.36756 2.55146 3.06036 3.28110 3.30964 3.49526 3.50994 3.66257 4.03168 4.20091 4.30616 4.37436 4.50860 4.61276 4.69621 4.89806 4.93370 4.97962 5.10597 5.12561 5.24542 5.33490 5.46360 5.58004 5.60218 5.82541 5.87087 6.03432 6.13367 6.33781 6.38438 6.69177 6.85960 7.11132 7.70445 7.89724 8.16643 8.40452 8.85472 10.45362 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015233 B = 0.003483 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.624598 B = 8037.406624 C = 9684.210089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.025 3.975 3 N -0.477 5.477 4 C 0.192 3.808 5 N -0.613 5.613 6 C 0.510 3.490 7 O -0.480 6.480 8 C 0.087 3.913 9 H 0.090 0.910 10 C -0.150 4.150 11 C -0.120 4.120 12 C -0.160 4.160 13 C 0.060 3.940 14 O -0.351 6.351 15 S 0.216 5.784 16 C -0.239 4.239 17 S 0.086 5.914 18 C -0.622 4.622 19 H 0.084 0.916 20 C 0.046 3.954 21 N -0.871 5.871 22 Si 1.083 2.917 23 H -0.278 1.278 24 H -0.276 1.276 25 H -0.279 1.279 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.414 0.586 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.101 0.899 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.472 21.428 0.930 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.117 4.117 3 N -0.198 5.198 4 C -0.179 4.179 5 N -0.264 5.264 6 C 0.294 3.706 7 O -0.351 6.351 8 C 0.026 3.974 9 H 0.107 0.893 10 C -0.188 4.188 11 C -0.157 4.157 12 C -0.198 4.198 13 C -0.017 4.017 14 O -0.269 6.269 15 S 0.460 5.540 16 C -0.476 4.476 17 S 0.335 5.665 18 C -0.770 4.770 19 H 0.102 0.898 20 C -0.165 4.165 21 N -0.503 5.503 22 Si 0.907 3.093 23 H -0.204 1.204 24 H -0.201 1.201 25 H -0.205 1.205 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.252 0.748 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.012 18.244 0.924 20.831 hybrid contribution -0.288 2.971 0.016 2.985 sum 9.724 21.215 0.940 23.356 Atomic orbital electron populations 1.20129 0.87954 1.02190 1.01874 1.19080 0.96769 0.84573 1.11253 1.65831 1.02764 1.32250 1.18976 1.23810 0.89893 0.93056 1.11093 1.42238 1.04059 1.08152 1.71958 1.20386 0.81719 0.91068 0.77467 1.90739 1.76718 1.22103 1.45570 1.21676 0.84295 0.92336 0.99118 0.89280 1.22207 1.00838 0.98232 0.97500 1.21583 0.94167 0.97084 1.02894 1.22240 0.97623 1.00457 0.99470 1.22692 0.91878 0.90767 0.96355 1.88092 1.12737 1.31845 1.94246 1.86017 1.01163 0.94945 1.71843 1.28332 1.01502 1.05198 1.12603 1.82492 1.12987 0.87621 1.83369 1.24177 0.92985 0.96365 1.63511 0.89834 1.26199 1.04558 0.94133 0.91639 1.70947 0.98199 1.39075 1.42096 0.83329 0.72583 0.75602 0.77745 1.20412 1.20068 1.20471 0.91770 0.91741 0.91109 0.74825 0.89944 0.89917 0.91369 0.90738 0.90521 0.90636 0.92844 0.88089 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.02 36.00 0.36 -0.71 16 2 C 0.03 0.53 6.73 -83.97 -0.57 -0.03 16 3 N -0.48 -9.46 10.55 -9.79 -0.10 -9.56 16 4 C 0.19 3.68 8.40 -87.20 -0.73 2.95 16 5 N -0.61 -8.79 5.36 -11.78 -0.06 -8.85 16 6 C 0.51 7.54 7.14 -10.98 -0.08 7.46 16 7 O -0.48 -9.41 14.03 -14.30 -0.20 -9.61 16 8 C 0.09 0.90 3.05 -27.84 -0.09 0.82 16 9 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 10 C -0.15 -1.17 5.37 -26.59 -0.14 -1.31 16 11 C -0.12 -0.69 6.03 -26.55 -0.16 -0.85 16 12 C -0.16 -0.99 6.14 -26.59 -0.16 -1.16 16 13 C 0.06 0.46 6.84 37.21 0.25 0.71 16 14 O -0.35 -4.28 9.94 -55.08 -0.55 -4.83 16 15 S 0.22 4.86 18.35 -107.50 -1.97 2.89 16 16 C -0.24 -5.59 6.67 29.46 0.20 -5.39 16 17 S 0.09 2.18 19.76 -107.50 -2.12 0.06 16 18 C -0.62 -17.34 9.26 30.80 0.29 -17.06 16 19 H 0.08 2.34 5.97 -52.49 -0.31 2.02 16 20 C 0.05 1.28 5.49 -17.49 -0.10 1.18 16 21 N -0.87 -25.18 13.68 55.47 0.76 -24.42 16 22 Si 1.08 24.51 29.91 -169.99 -5.08 19.42 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.23 7.37 -51.93 -0.38 0.84 16 29 H 0.41 4.28 8.67 -40.82 -0.35 3.93 16 30 H 0.08 0.50 7.99 -51.93 -0.41 0.08 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.28 7.90 7.12 -40.82 -0.29 7.61 16 LS Contribution 342.59 15.07 5.16 5.16 Total: -1.00 -33.97 342.59 -9.88 -43.85 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.78 Total: -0.71 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -0.93 Total: -13.39 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.59 Total: -42.83 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.75 Total: -14.44 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.08 Total: 19.42 kcal Atomic # 16 Polarization: 7.04 SS G_CDS: -4.10 Total: 2.94 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.97 -9.88 -43.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120732739.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.929 kcal (2) G-P(sol) polarization free energy of solvation -33.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds