Wall clock time and date at job start Tue Mar 31 2020 14:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31591 * 122.23739 * 2 1 4 4 C 1.29941 * 117.14243 * 180.29415 * 3 2 1 5 5 N 1.38890 * 125.36521 * 179.73230 * 4 3 2 6 6 C 1.34781 * 119.99886 * 179.97438 * 5 4 3 7 7 O 1.21287 * 119.99777 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99938 * 180.02562 * 6 5 4 9 9 H 1.09007 * 109.47886 * 305.00276 * 8 6 5 10 10 C 1.53085 * 109.48172 * 65.02521 * 8 6 5 11 11 C 1.53180 * 109.16258 * 177.59587 * 10 8 6 12 12 C 1.53174 * 109.03186 * 303.01478 * 11 10 8 13 13 C 1.53093 * 109.16340 * 56.98392 * 12 11 10 14 14 O 1.42892 * 109.42642 * 302.39573 * 13 12 11 15 15 S 1.76144 * 109.26768 * 359.75198 * 4 3 2 16 16 C 1.34656 * 122.22814 * 179.82986 * 2 1 3 17 17 S 1.76206 * 125.93075 * 0.02562 * 16 2 1 18 18 C 1.76199 * 99.99945 * 179.71911 * 17 16 2 19 19 H 1.07998 * 120.00077 * 359.97438 * 18 17 16 20 20 C 1.38432 * 119.99815 * 179.97438 * 18 17 16 21 21 N 1.31810 * 120.00042 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99798 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99774 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99954 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99947 * 22 20 18 26 26 H 1.09004 * 109.47269 * 270.17776 * 1 2 3 27 27 H 1.08997 * 109.47104 * 30.17317 * 1 2 3 28 28 H 1.08999 * 109.47722 * 150.17668 * 1 2 3 29 29 H 0.96995 * 120.00007 * 0.02562 * 5 4 3 30 30 H 1.09005 * 109.52443 * 297.49831 * 10 8 6 31 31 H 1.09000 * 109.52557 * 57.68461 * 10 8 6 32 32 H 1.09000 * 109.54588 * 62.88544 * 11 10 8 33 33 H 1.09001 * 109.54289 * 183.15622 * 11 10 8 34 34 H 1.09004 * 109.52469 * 176.88733 * 12 11 10 35 35 H 1.09000 * 109.52968 * 297.01474 * 12 11 10 36 36 H 1.09000 * 109.47920 * 62.37185 * 13 12 11 37 37 H 1.09001 * 109.48341 * 182.40096 * 13 12 11 38 38 H 0.96996 * 119.99962 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2089 1.1131 0.0000 4 6 3.5031 0.9977 -0.0059 5 7 4.4044 2.0544 -0.0122 6 6 5.7298 1.8097 -0.0176 7 8 6.1354 0.6667 -0.0173 8 6 6.7077 2.9563 -0.0238 9 1 6.4914 3.6140 -0.8659 10 6 6.5810 3.7425 1.2836 11 6 7.6188 4.8692 1.2954 12 6 9.0144 4.2647 1.1135 13 6 9.0471 3.4583 -0.1875 14 8 8.0376 2.4478 -0.1457 15 16 3.9344 -0.7101 -0.0053 16 6 2.2250 -1.1391 0.0034 17 16 1.5695 -2.7747 0.0076 18 6 3.0663 -3.7042 0.0022 19 1 4.0185 -3.1946 -0.0027 20 6 3.0218 -5.0878 0.0042 21 7 1.8597 -5.7098 0.0096 22 14 4.6087 -6.0733 -0.0023 23 1 5.0224 -6.3363 -1.4041 24 1 4.3930 -7.3636 0.7005 25 1 5.6723 -5.3036 0.6916 26 1 -0.3634 0.0032 1.0277 27 1 -0.3633 0.8884 -0.5165 28 1 -0.3634 -0.8915 -0.5111 29 1 4.0800 2.9685 -0.0121 30 1 5.5803 4.1683 1.3572 31 1 6.7572 3.0761 2.1280 32 1 7.4129 5.5632 0.4805 33 1 7.5719 5.3982 2.2473 34 1 9.7541 5.0639 1.0652 35 1 9.2403 3.6096 1.9549 36 1 8.8617 4.1225 -1.0316 37 1 10.0251 2.9906 -0.3008 38 1 1.0357 -5.1981 0.0126 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120732739.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:07 Heat of formation + Delta-G solvation = -78.113959 kcal Electronic energy + Delta-G solvation = -22827.439405 eV Core-core repulsion = 19307.322469 eV Total energy + Delta-G solvation = -3520.116935 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.84723 -40.47873 -39.61594 -36.33087 -35.00847 -34.64705 -32.94001 -31.77458 -28.85104 -27.35701 -27.19537 -25.07419 -24.62845 -22.60683 -21.55656 -21.21598 -20.40656 -19.34384 -18.62472 -17.90563 -17.25070 -16.91528 -16.83524 -16.27779 -15.97270 -15.71156 -15.53898 -15.36562 -14.95546 -14.79819 -14.67863 -14.18047 -13.96871 -13.67476 -13.57085 -13.37263 -12.96593 -12.73663 -12.39029 -12.23462 -12.20116 -12.12661 -11.99230 -11.92441 -11.45417 -11.34023 -11.09704 -10.82921 -10.58915 -10.55813 -10.49838 -9.65572 -9.11376 -8.52636 -6.44403 -0.36006 0.08583 0.71190 1.05828 1.17741 1.32861 1.45968 1.51321 1.73698 1.89410 2.16673 2.81855 2.84292 2.90883 3.25909 3.62197 3.65928 3.84603 3.96640 4.00663 4.14463 4.31261 4.44787 4.57637 4.61946 4.76208 4.76687 4.82922 4.86336 4.94878 4.99555 5.08121 5.16324 5.35855 5.36124 5.53197 5.76833 6.00977 6.12738 6.66548 6.74426 6.78204 8.31445 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015233 B = 0.003483 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.624598 B = 8037.406624 C = 9684.210089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.047 3.953 3 N -0.479 5.479 4 C 0.234 3.766 5 N -0.596 5.596 6 C 0.508 3.492 7 O -0.528 6.528 8 C 0.095 3.905 9 H 0.128 0.872 10 C -0.148 4.148 11 C -0.115 4.115 12 C -0.159 4.159 13 C 0.053 3.947 14 O -0.393 6.393 15 S 0.160 5.840 16 C -0.274 4.274 17 S 0.050 5.950 18 C -0.638 4.638 19 H 0.074 0.926 20 C 0.003 3.997 21 N -0.896 5.896 22 Si 1.123 2.877 23 H -0.263 1.263 24 H -0.265 1.265 25 H -0.274 1.274 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.439 0.561 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.404 25.373 0.761 27.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.094 4.094 3 N -0.201 5.201 4 C -0.139 4.139 5 N -0.250 5.250 6 C 0.294 3.706 7 O -0.402 6.402 8 C 0.034 3.966 9 H 0.146 0.854 10 C -0.186 4.186 11 C -0.153 4.153 12 C -0.197 4.197 13 C -0.023 4.023 14 O -0.312 6.312 15 S 0.405 5.595 16 C -0.509 4.509 17 S 0.296 5.704 18 C -0.787 4.787 19 H 0.092 0.908 20 C -0.202 4.202 21 N -0.530 5.530 22 Si 0.941 3.059 23 H -0.188 1.188 24 H -0.190 1.190 25 H -0.199 1.199 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.086 0.914 29 H 0.281 0.719 30 H 0.124 0.876 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.948 22.285 0.755 24.841 hybrid contribution -0.456 2.140 0.068 2.189 sum 10.493 24.425 0.823 26.596 Atomic orbital electron populations 1.20278 0.85350 1.03340 1.03301 1.19790 0.98572 0.84050 1.07023 1.66063 1.02416 1.31042 1.20567 1.24121 0.90253 0.92947 1.06546 1.42371 1.03480 1.08119 1.71018 1.21563 0.81990 0.91822 0.75193 1.90732 1.77352 1.24681 1.47437 1.21839 0.82617 0.90219 1.01964 0.85439 1.22255 1.03066 0.98254 0.94990 1.21613 0.92729 0.96423 1.04501 1.22239 0.98884 1.00602 0.97930 1.22950 0.90837 0.90507 0.98017 1.88038 1.13960 1.34516 1.94667 1.86277 1.02004 0.98259 1.72949 1.28185 1.01707 1.04645 1.16372 1.82286 1.12417 0.89147 1.86572 1.24379 0.93664 0.97064 1.63561 0.90837 1.27535 1.06604 0.95320 0.90782 1.71020 0.98421 1.39052 1.44467 0.82872 0.69500 0.74844 0.78715 1.18813 1.18965 1.19912 0.90084 0.89052 0.91428 0.71857 0.87633 0.92231 0.89096 0.89547 0.88232 0.92382 0.90644 0.87958 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.08 10.02 71.23 0.71 -1.37 16 2 C 0.05 1.92 6.73 41.77 0.28 2.20 16 3 N -0.48 -17.95 10.55 -184.88 -1.95 -19.90 16 4 C 0.23 8.61 8.40 179.15 1.50 10.12 16 5 N -0.60 -15.51 5.36 -309.57 -1.66 -17.17 16 6 C 0.51 14.17 7.14 87.66 0.63 14.80 16 7 O -0.53 -20.79 14.03 15.93 0.22 -20.57 16 8 C 0.09 1.67 3.05 29.88 0.09 1.76 16 9 H 0.13 1.32 8.14 -2.38 -0.02 1.30 16 10 C -0.15 -1.82 5.37 30.68 0.16 -1.65 16 11 C -0.12 -0.85 6.03 30.71 0.19 -0.67 16 12 C -0.16 -1.50 6.14 30.68 0.19 -1.31 16 13 C 0.05 0.68 6.84 72.01 0.49 1.17 16 14 O -0.39 -8.94 9.94 -130.00 -1.29 -10.24 16 15 S 0.16 7.35 18.35 -56.49 -1.04 6.31 16 16 C -0.27 -13.01 6.67 67.00 0.45 -12.56 16 17 S 0.05 2.61 19.76 -56.49 -1.12 1.50 16 18 C -0.64 -37.15 9.26 67.87 0.63 -36.52 16 19 H 0.07 4.32 5.97 -2.91 -0.02 4.30 16 20 C 0.00 0.19 5.49 84.74 0.47 0.65 16 21 N -0.90 -53.56 13.68 21.59 0.30 -53.27 16 22 Si 1.12 50.40 29.91 68.60 2.05 52.45 16 23 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 27 H 0.09 2.51 8.14 -2.39 -0.02 2.50 16 28 H 0.07 2.30 7.37 -2.39 -0.02 2.28 16 29 H 0.44 7.23 8.67 -92.71 -0.80 6.42 16 30 H 0.11 0.79 7.99 -2.38 -0.02 0.78 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.27 15.98 7.12 -92.71 -0.66 15.32 16 Total: -1.00 -78.04 342.59 1.71 -76.33 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 0.41 Total: 7.94 kcal Atomic # 6 Polarization: -29.18 SS G_CDS: 5.79 Total: -23.39 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -3.32 Total: -90.34 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -1.07 Total: -30.81 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 2.05 Total: 52.45 kcal Atomic # 16 Polarization: 9.96 SS G_CDS: -2.15 Total: 7.81 kcal Total: -78.04 1.71 -76.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120732739.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.784 kcal (2) G-P(sol) polarization free energy of solvation -78.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds