Wall clock time and date at job start Tue Mar 31 2020 14:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47297 * 2 1 4 4 C 1.53004 * 109.47229 * 239.99927 * 2 1 3 5 5 C 1.50703 * 109.47072 * 120.00284 * 2 1 3 6 6 C 1.33388 * 125.20675 * 59.99767 * 5 2 1 7 7 C 1.38417 * 114.92216 * 180.02562 * 6 5 2 8 8 C 1.33395 * 114.92349 * 359.97438 * 7 6 5 9 9 S 1.76197 * 125.20542 * 179.97438 * 8 7 6 10 10 O 1.42097 * 106.40207 * 203.54571 * 9 8 7 11 11 O 1.42100 * 106.40175 * 336.46419 * 9 8 7 12 12 N 1.65598 * 107.21870 * 90.00190 * 9 8 7 13 13 C 1.36939 * 119.99885 * 90.00024 * 12 9 8 14 14 H 1.08004 * 119.99611 * 7.24250 * 13 12 9 15 15 C 1.38808 * 120.00185 * 187.24346 * 13 12 9 16 16 N 1.31618 * 120.00143 * 25.59874 * 15 13 12 17 17 Si 1.86794 * 120.00049 * 205.59809 * 15 13 12 18 18 H 1.48496 * 109.47424 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47341 * 120.00086 * 17 15 13 20 20 H 1.48499 * 109.47456 * 239.99709 * 17 15 13 21 21 C 1.46502 * 120.00178 * 270.00162 * 12 9 8 22 22 C 1.47202 * 109.47136 * 93.32669 * 21 12 9 23 23 N 6.20502 * 129.33817 * 156.79708 * 2 1 3 24 24 S 1.75879 * 109.58979 * 0.02562 * 8 7 6 25 25 H 1.09001 * 109.46959 * 300.00216 * 1 2 3 26 26 H 1.08994 * 109.47259 * 60.00054 * 1 2 3 27 27 H 1.09001 * 109.47326 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47291 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46899 * 300.00057 * 3 2 1 30 30 H 1.08997 * 109.46842 * 59.99842 * 3 2 1 31 31 H 1.09001 * 109.47019 * 300.00252 * 4 2 1 32 32 H 1.09004 * 109.47074 * 59.99877 * 4 2 1 33 33 H 1.08989 * 109.47547 * 180.02562 * 4 2 1 34 34 H 1.08004 * 122.53892 * 0.02562 * 6 5 2 35 35 H 1.07998 * 122.53927 * 179.73339 * 7 6 5 36 36 H 0.96992 * 120.00668 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.46675 * 213.32561 * 21 12 9 38 38 H 1.09000 * 109.46690 * 333.32272 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.7748 -1.9812 1.5437 7 6 2.3449 -2.4172 2.7273 8 6 3.0658 -1.5007 3.3751 9 16 3.9064 -1.7623 4.9014 10 8 4.0590 -0.4825 5.4998 11 8 3.2474 -2.8462 5.5418 12 7 5.4320 -2.2927 4.5361 13 6 6.4479 -1.3905 4.3651 14 1 6.2841 -0.3452 4.5822 15 6 7.6882 -1.8193 3.9129 16 7 7.7820 -2.9140 3.1881 17 14 9.2242 -0.8428 4.3328 18 1 8.8516 0.3377 5.1530 19 1 10.1625 -1.7013 5.0995 20 1 9.8800 -0.3887 3.0802 21 6 5.6949 -3.7271 4.3957 22 6 5.5638 -4.1139 2.9815 23 7 5.4633 -4.4109 1.8908 24 16 3.0475 0.0093 2.4734 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1393 33 1 3.1299 -0.7217 -1.2491 34 1 1.1676 -2.6215 0.9209 35 1 2.2126 -3.4221 3.1001 36 1 8.6486 -3.2135 2.8718 37 1 6.7054 -3.9466 4.7403 38 1 4.9770 -4.2881 4.9940 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121778947.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:52 Heat of formation + Delta-G solvation = -12.686803 kcal Electronic energy + Delta-G solvation = -24168.363519 eV Core-core repulsion = 20651.083718 eV Total energy + Delta-G solvation = -3517.279801 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -38.42775 -36.78457 -36.06970 -35.65194 -34.62212 -34.50115 -31.82606 -28.57808 -27.57439 -27.43693 -27.31135 -24.21293 -23.88337 -20.29201 -19.39083 -18.62604 -17.83534 -17.12390 -16.65166 -16.16288 -15.45268 -14.85798 -14.62965 -14.41258 -14.35936 -13.96103 -13.67811 -13.10416 -13.03067 -12.74313 -12.52776 -12.42070 -12.07529 -11.87866 -11.74952 -11.72459 -11.54912 -11.46760 -11.29516 -11.13312 -11.03414 -10.94628 -10.92912 -10.88234 -10.62356 -10.41528 -10.29767 -10.16111 -10.08600 -9.75733 -8.60915 -8.40067 -7.96963 -6.85027 -4.16482 1.10206 1.53081 2.09474 2.43942 2.99773 3.03850 3.09466 3.17818 3.66966 3.90930 4.11220 4.45474 4.52532 4.55990 4.81347 4.88495 4.89829 5.25018 5.29526 5.49352 5.53734 5.57685 5.68931 5.76005 5.76992 5.78623 5.89982 5.94242 6.03984 6.05975 6.19756 6.25201 6.42403 6.48602 6.53188 6.80158 6.89443 7.09664 7.97751 8.36711 8.79243 8.84017 10.14123 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014136 B = 0.005112 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.333997 B = 5475.512090 C = 5768.145118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.001 3.999 3 C -0.152 4.152 4 C -0.136 4.136 5 C -0.160 4.160 6 C -0.157 4.157 7 C -0.028 4.028 8 C -0.752 4.752 9 S 2.551 3.449 10 O -0.974 6.974 11 O -0.990 6.990 12 N -0.794 5.794 13 C -0.243 4.243 14 H 0.129 0.871 15 C 0.032 3.968 16 N -0.832 5.832 17 Si 0.935 3.065 18 H -0.258 1.258 19 H -0.272 1.272 20 H -0.278 1.278 21 C 0.224 3.776 22 C 0.241 3.759 23 N -0.473 5.473 24 S 0.194 5.806 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.282 0.718 37 H 0.133 0.867 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.178 3.505 -4.080 8.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.001 4.001 3 C -0.210 4.210 4 C -0.194 4.194 5 C -0.279 4.279 6 C -0.188 4.188 7 C -0.061 4.061 8 C -0.945 4.945 9 S 2.647 3.353 10 O -0.963 6.963 11 O -0.979 6.979 12 N -0.617 5.617 13 C -0.391 4.391 14 H 0.146 0.854 15 C -0.181 4.181 16 N -0.472 5.472 17 Si 0.760 3.240 18 H -0.182 1.182 19 H -0.198 1.198 20 H -0.204 1.204 21 C 0.094 3.906 22 C -0.078 4.078 23 N -0.154 5.154 24 S 0.462 5.538 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.093 0.907 37 H 0.150 0.850 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.227 4.533 -4.677 9.011 hybrid contribution 0.078 -1.026 -0.811 1.310 sum -6.149 3.507 -5.488 8.956 Atomic orbital electron populations 1.21875 0.93283 1.02240 1.01873 1.19118 0.95599 0.94576 0.90801 1.21998 1.01847 0.94770 1.02373 1.21881 1.01712 1.00229 0.95557 1.24950 1.03544 0.98640 1.00783 1.20098 1.04726 0.95375 0.98605 1.19715 0.93958 0.99283 0.93191 1.37323 1.21155 1.03755 1.32279 1.10957 0.73155 0.73438 0.77722 1.93384 1.85506 1.41224 1.76220 1.93363 1.75235 1.54276 1.75046 1.55488 1.19709 1.09411 1.77065 1.20287 0.86742 0.93916 1.38110 0.85390 1.25613 1.00698 0.97382 0.94382 1.69949 1.26965 1.22790 1.27465 0.85698 0.79608 0.79888 0.78850 1.18200 1.19766 1.20415 1.19012 1.05254 0.81891 0.84403 1.29415 0.90321 0.92271 0.95770 1.80814 1.12348 1.09835 1.12364 1.83847 1.46799 1.10911 1.12266 0.92343 0.92169 0.92299 0.91856 0.91678 0.91984 0.92300 0.92206 0.92184 0.85016 0.84383 0.90674 0.84972 0.87997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 8.34 37.16 0.31 -1.15 16 2 C 0.00 0.02 0.91 -155.66 -0.14 -0.13 16 3 C -0.15 -1.79 7.56 37.16 0.28 -1.51 16 4 C -0.14 -1.64 8.34 37.16 0.31 -1.33 16 5 C -0.16 -2.63 5.13 -36.00 -0.18 -2.82 16 6 C -0.16 -2.70 9.31 -41.21 -0.38 -3.08 16 7 C -0.03 -0.55 9.84 -41.21 -0.41 -0.96 16 8 C -0.75 -15.81 6.57 29.04 0.19 -15.61 16 9 S 2.55 57.30 5.80 -107.50 -0.62 56.68 16 10 O -0.97 -23.75 16.68 -57.17 -0.95 -24.70 16 11 O -0.99 -22.87 16.37 -57.17 -0.94 -23.81 16 12 N -0.79 -17.51 2.88 -62.77 -0.18 -17.69 16 13 C -0.24 -5.51 9.47 -15.06 -0.14 -5.65 16 14 H 0.13 2.91 7.22 -52.48 -0.38 2.53 16 15 C 0.03 0.69 4.90 -17.43 -0.09 0.60 16 16 N -0.83 -18.77 8.99 55.49 0.50 -18.27 16 17 Si 0.94 17.33 29.62 -169.99 -5.04 12.29 16 18 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 19 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 20 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 21 C 0.22 4.51 5.45 -6.83 -0.04 4.47 16 22 C 0.24 5.33 13.28 -20.79 -0.28 5.05 16 23 N -0.47 -11.15 18.53 42.11 0.78 -10.37 16 24 S 0.19 3.66 21.71 -107.50 -2.33 1.33 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.63 7.94 -51.93 -0.41 0.22 16 28 H 0.06 0.80 7.96 -51.93 -0.41 0.38 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.73 7.96 -51.93 -0.41 0.32 16 31 H 0.06 0.71 7.94 -51.93 -0.41 0.30 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.80 8.14 -51.94 -0.42 0.38 16 34 H 0.13 1.95 8.01 -52.48 -0.42 1.53 16 35 H 0.14 2.58 8.05 -52.49 -0.42 2.15 16 36 H 0.28 6.07 8.31 -40.82 -0.34 5.73 16 37 H 0.13 2.55 6.47 -51.93 -0.34 2.22 16 38 H 0.10 1.81 6.95 -51.93 -0.36 1.45 16 LS Contribution 348.53 15.07 5.25 5.25 Total: -1.00 -28.38 348.53 -8.92 -37.30 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.82 Total: 4.11 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: -0.57 Total: -22.11 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: 1.10 Total: -46.33 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -1.89 Total: -48.51 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.04 Total: 12.29 kcal Atomic # 16 Polarization: 60.96 SS G_CDS: -2.96 Total: 58.01 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.38 -8.92 -37.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121778947.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.610 kcal (2) G-P(sol) polarization free energy of solvation -28.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds